Deconvolution of atomic force microscopy data for cellular and molecular imaging

IEEE Signal Processing Magazine

Volumn 23, Issue 3, 2006, Pages 73-83

  Udpa, Lalita ^a   Ayres, Virginia M ^a   Fan, Yuan ^a   Chen, Qian ^b   Kumar, Shiva Arun ^a  

^a Michigan State University   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASPECT RATIO; CELLS; ESTIMATION; MATHEMATICAL MODELS; MATHEMATICAL TRANSFORMATIONS; MICROSCOPES; MOLECULAR BIOLOGY; MORPHOLOGY; PROBES;

IMAGE FEATURES; LEGENDRE TRANSFORMS (LTS); MATHEMATICAL MORPHOLOGY (MM); SCANNING PROBE MICROSCOPY (SPM);

IMAGE RECONSTRUCTION;

EID: 85032751863     PISSN: 10535888     EISSN: None     Source Type: Journal    
DOI: 10.1109/MSP.2006.1628880     Document Type: Article

References (26)

1. G. Binning and H. Rohrer, "Scanning tunnelling microscopy," Helv. Phys. Acta., vol. 55, no. 6, pp. 726-735, 1982.
2. G. Binnig, C.F. Quate, and C. Gerber, "Atomic force microscope," Phys. Rev. Lett., vol. 56, no. 9, pp. 930-933, 1986.
3. A.L. Weisenhorn, P.K. Hansma, T.R. Albrecht, and C.F. Quate, "Forces in atomic force microscopy in air and water," Appl. Phys. Lett., vol. 54, no. 26, pp. 2651-2653, 1989.
4. Z. Shao and J. Yang, "Progress in high resolution atomic force microscopy in biology," Quart. Rev. Biophys., vol. 28, no. 2, pp. 195-251, 1995.
5. C. Gebeshuber, J.H. Kindt, J.B. Thompson, Y. Del Amo, H. Stachelberger, M.A. Brzezinski, G.D. Stucky, D.E. Morse, and P.K. Hansma, "Atomic force microscopy study of living diatoms in ambient conditions," J. Microsc., vol. 212, no. 3, pp. 292-299, 2003.
6. M.M. Rahman, H. Uchida, K. Nishimura, and M. Inoue, "Structural analysis of adenosine molecules on HOPG surface by STM observation and molecular orbital calculations," in Proc. 2nd Int. Conf. Electrical and Computer Engineering, ICECE 2002, Dhaka, Bangladesh, Dec. 26-28, 2002, p. 80.
7. V. Subramaniam, A.K. Kirsch, and T.M. Jovin, "Cell biological applications of scanning near-field optical microscopy (NSOM)," Cell. Mol. Biol., vol. 44, no. 5, pp. 689-700, 1998.
8. H.G. Hansma, "Surface biology of DNA by atomic force microscopy," Ann. Rev. Phys. Chem., vol. 52, pp. 71-92, 2001.
9. S. Kasas, N.H. Thomson, B.L. Smith, H.G. Hansma, X. Zhu, M. Guthold, C. Bustamante, E.T. Kool, M. Kashlev, and P.K. Hansma. "E. coli RNA polymerase activity observed using atomic force microscopy," Biochem., vol. 36, no. 3, pp. 461-468 1997.
10. Z. Shao, "Probing nanometer structures with atomic force microscopy," News Physiol. Sci., vol. 14, no. 4, pp. 142-149, 1999.
11. E.L. Florin, V.T. Moy, and H.E. Gaub, "Adhesion forces between individual ligand-receptor pairs," Science, vol. 264, no. 5157, pp. 415-417, 1994.
12. Pier Carlo Braga and Davide Ricci, Eds., Atomic Force Microscopy: Biomedical Methods and Applications, Series: Methods in Molecular Biology, vol. 242. Totowa, NJ: Humana Press, 2003.
13. A. Touhami, B. Nysten, and Y.F. Dufrene, "Nanoscale mapping of the elasticity of microbial cells by atomic force microscopy," Langmuir, vol. 19, no. 11, pp. 4539-4543, 2003.
14. Y. Jiao and T.E. Schaffer, "Accurate height and volume measurements on soft samples with the atomic force microscope," Langmuir, vol. 20, no. 23, pp. 10038-10045, 2004.
15. A.P. Gunning, A.R. Kirby, A.R. Mackie, P. kroon, G. Williamson, and V.J. Morris, "Watching molecular processes with the atomic force microscope: Dynamics of polymer adsorption and desorption at the single molecule level," J. Microscop., vol. 216, no. 1, pp 52-56, 2004.
16. L. Bozec and M. Horton, "Topography and mechanical properties of single molecules of type I collagen using atomic force microscopy," Biophys. J., vol. 88, no. 6, pp. 4223-4231, 2005.
17. A.E. Pelling, S. Sehati, E.B. Gralla, J.S. Valentine, and J.K. Gimzewski, "Local nanomechanical motion of the cell wall of saccharomyces cerevisiae, science," vol. 305, no. 5687, pp. 1147-1150, 2004.
18. C.Le Grimellec, E. Lesniewska, M.C. Giocondi, E. Finot, V. Vie, and J.-P. Goudonnet, "Imaging of the surface of living cells by low-force contact-mode atomic force microscopy," Biophys. J., vol. 75, no. 2, pp. 695-703, 1998.
19. J.S. Villarubia, "Morphological estimation of tip geometry for scanned probe microscopy," Surf. Sci., vol. 321, no. 3, pp. 287-300, 1994.
20. J.S. Villarubia, "Algorithms for scanned probe microscope image simulation, surface reconstruction and tip estimation," J. Res. Nat. Inst. Stand. Technol., vol. 102, no. 4, pp. 425-454, 1997.
21. D. Keller, "Reconstruction of STM and AFM images distorted by finite size tips," Surf. Sci., vol. 253, no. 1-3, pp. 353-364, 1991.
22. G.S. Pingali and R. Jain, "Restoration of scanning probe microscope images," in Proc. IEEE Workshop Computer Vision, 1992, p. 282.
23. H.B. Callen, Thermodynamics, 2nd ed. New York: Wiley, 1985.
24. R.C. Gonzalez and R.E. Woods, Digital Image Processing. Englewood Cliffs, NJ: Prentice-Hall, 2002.
25. R. Wiesendanger, Scanning Probe Microscopy and Spectroscopy: Methods and Applications. Cambridge, United Kingdom: Cambridge Univ. Press, 1994.
26. D.A. Walters, J.P. Cleveland, N.H. Thomson, P.K. Hansma, M.A. Wendman, G. Gurley, and V. Elings, "Short cantilevers for atomic force microscopy," Rev. Sci. Inst., vol. 67, no. 10, pp. 3583-3590, 1996.