COMPASS: Continuous open mouse phenotyping of activity and sleep status

Wellcome Open Research

Volumn 1, Issue , 2017, Pages

  Brown, Laurence A ^a   Hasan, Sibah ^a   Foster, Russell G ^a   Peirson, Stuart N ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85031732393     PISSN: None     EISSN: 2398502X     Source Type: Journal    
DOI: 10.12688/wellcomeopenres.9892.1     Document Type: Article

References (41)

1. Foster RG, Wulff K: The rhythm of rest and excess. Nat Rev Neurosci. 2005; 6(5): 407-14.t
2. Hastings MH, Reddy AB, Maywood ES: A clockwork web: circadian timing in brain and periphery, in health and disease. Nat Rev Neurosci. 2003; 4(8): 649-61.
3. Tizard I: Sickness behavior, its mechanisms and significance. Anim Health Res Rev. 2008; 9(1): 87-99.
4. Wolfensohn S, Lloyd M: Handbook of laboratory animal management and welfare. 3rd edn, Blackwell Pub., Oxford, UK; Ames, Iowa. 2003.
5. Coogan AN, Schutová B, Husung S, et al.: The circadian system in Alzheimer's disease: disturbances, mechanisms, and opportunities. Biol Psychiatry. 2013; 74(5): 333-9.
6. Morton AJ: Circadian and sleep disorder in Huntington's disease. Exp Neurol. 2013; 243: 34-44.
7. Wulff K, Dijk DJ, Middleton B, et al.: Sleep and circadian rhythm disruption in schizophrenia. Br J Psychiatry. 2012; 200(4): 308-16.
8. Albrecht U, Foster RG: Placing ocular mutants into a functional context: a chronobiological approach. Methods. 2002; 28(4): 465-77.
9. Jud C, Schmutz I, Hampp G, et al.: A guideline for analyzing circadian wheelrunning behavior in rodents under different lighting conditions. Biol Proced Online. 2005; 7(1): 101-16.
10. Novak CM, Burghardt PR, Levine JA: The use of a running wheel to measure activity in rodents: relationship to energy balance, general activity, and reward. Neurosci Biobehav Rev. 2012; 36(3): 1001-14.
11. Crawley JN: Behavioral phenotyping strategies for mutant mice. Neuron. 2008; 57(6): 809-18.
12. Tobler I: Is sleep fundamentally different between mammalian species? Behav Brain Res. 1995; 69(1-2): 35-41.
13. Fisher SP, Godinho SI, Pothecary CA, et al.: Rapid assessment of sleep-wake behavior in mice. J Biol Rhythms. 2012; 27(1): 48-58.
14. Flores AE, Flores JE, Deshpande H, et al.: Pattern recognition of sleep in rodents using piezoelectric signals generated by gross body movements. IEEE Trans Biomed Eng. 2007; 54(2): 225-33.
15. Pack AI, Galante RJ, Maislin G, et al.: Novel method for high-throughput phenotyping of sleep in mice. Physiol Genomics. 2007; 28(2): 232-8.
16. D'Ausilio A: Arduino: a low-cost multipurpose lab equipment. Behav Res Methods. 2012; 44(2): 305-13.
17. Teikari P, Najjar RP, Malkki H, et al.: An inexpensive Arduino-based LED stimulator system for vision research. J Neurosci Methods. 2012; 211(2): 227-36.
18. Margolis M: Arduino cookbook. 2nd ed.edn, O'Reilly, Beijing; Farnham; 2012.
19. Gaskill BN, Gordon CJ, Pajor EA, et al.: Heat or insulation: behavioral titration of mouse preference for warmth or access to a nest. PLoS One. 2012; 7(3): e32799.
20. McKinney W: Python for data analysis. O'Reilly, Beijing. 2013.
21. Hasan S, van der Veen DR, Winsky-Sommerer R, et al.: A human sleep homeostasis phenotype in mice expressing a primate-specific PER3 variablenumber tandem-repeat coding-region polymorphism. FASEB J. 2014; 28(6): 2441-54.
22. Franken P, Malafosse A, Tafti M: Genetic variation in EEG activity during sleep in inbred mice. Am J Physiol. 1998; 275(4 Pt 2): R1127-37.
23. Schmid B, Helfrich-Forster C, Yoshii T: A new Image J plug-in "ActogramJ" for chronobiological analyses. J Biol Rhythms. 2011; 26(5): 464-7.
24. Hunter JD: Matplotlib: A 2D graphics environment. Comput Sci Eng. 2007; 9(3): 90-95.
25. Lucas RJ, Peirson SN, Berson DM, et al.: Measuring and using light in the melanopsin age. Trends Neurosci. 2014; 37(1): 1-9.
26. Altman DG, Bland JM: Comparison of methods of measuring blood pressure. J Epidemiol Community Health. 1986; 40(3): 274-7.
27. Richardson K, Livieratos A, Dumbill R, et al.: Circadian profiling in two mouse models of lysosomal storage disorders; Niemann Pick type-C and Sandhoff disease. Behav Brain Res. 2016; 297: 213-23.
28. Porter AJ, Pillidge K, Tsai YC, et al.: A lack of functional NK1 receptors explains most, but not all, abnormal behaviours of NK1R-/- mice1. Genes Brain Behav. 2015; 14(2): 189-99.
29. Pritchett D, Jagannath A, Brown LA, et al.: Deletion of Metabotropic Glutamate Receptors 2 and 3 (mGlu2 & mGlu3) in Mice Disrupts Sleep and Wheel- Running Activity, and Increases the Sensitivity of the Circadian System to Light. PLoS One. 2015; 10(5): e0125523.
30. Sato M, Sagawa Y, Hirai N, et al.: Noninvasive detection of sleep/wake changes and cataplexy-like behaviors in orexin/ataxin-3 transgenic narcoleptic mice across the disease onset. Exp Neurol. 2014; 261: 744-751.
31. Loh DH, Kudo T, Truong D, et al.: The Q175 mouse model of Huntington's disease shows gene dosage- and age-related decline in circadian rhythms of activity and sleep. PLoS One. 2013; 8(7): e69993.
32. McShane BB, Jensen ST, Pack AI, et al.: Statistical Learning with Time Series Dependence: An Application to Scoring Sleep in Mice. J Am Stat Assoc. 2013; 108(504): 1147-1162.
33. McShane BB, Galante RJ, Biber M, et al.: Assessing REM sleep in mice using video data. Sleep. 2012; 35(3): 433-442.
34. Yaghouby F, Donohue KD, O'Hara BF, et al.: Noninvasive dissection of mouse sleep using a piezoelectric motion sensor. J Neurosci Methods. 2016; 259: 90-100.
35. Bains RS, Cater HL, Sillito RR, et al.: Analysis of Individual Mouse Activity in Group Housed Animals of Different Inbred Strains using a Novel Automated Home Cage Analysis System. Front Behav Neurosci. 2016; 10: 106.
36. Hagihara H, Horikawa T, Nakamura HK, et al.: Circadian Gene Circuitry Predicts Hyperactive Behavior in a Mood Disorder Mouse Model. Cell Rep. 2016; 14(12): 2784-96.
37. Rolls A, Pang WW, Ibarra I, et al.: Sleep disruption impairs haematopoietic stem cell transplantation in mice. Nat Commun. 2015; 6: 8516.
38. Brown L: LozRiviera/COMPASS-paper: Submission for Wellcome Open Research. [Data set]. Zenodo. 2016.
39. Brown LA, Hasan S, Foster RG, et al.: PIR data and EEG scoring for Wellcome Open Research methods paper (Brown et al 2016). [Data set]. Zenodo. 2016.
40. Brown LA, Hasan S, Foster RG, et al.: The raw EEG data, 4 files (EEG-A to D), in European data format (.edf). [Data set]. Zenodo. 2016.
41. Brown LA, Hasan A, Foster RG, et al.: Examples of movements of a mouse required to activate PIR sensors at different heights from the cage floor. Figshare. 2016.