메뉴 건너뛰기




Volumn 48, Issue 4, 2017, Pages 346-356

Leukocyte Dynamics Influence Reference Gene Stability in Whole Blood: Data-Driven qRT-PCR Normalization Is a Robust Alternative for Measurement ofTranscriptional Biomarkers

Author keywords

complete blood count; ddCT; delta delta CT; digital PCR; housekeeping gene; NORMA Gene; polymerase chain reaction; RNA; 2 microglobulin; actin; CT

Indexed keywords

ANTICOAGULANT AGENT; ANTITHROMBOCYTIC AGENT; BETA 2 MICROGLOBULIN; BETA ACTIN; BIOLOGICAL MARKER; CHOLESTEROL;

EID: 85031125466     PISSN: 00075027     EISSN: 19437730     Source Type: Journal    
DOI: 10.1093/LABMED/LMX035     Document Type: Article
Times cited : (16)

References (22)
  • 1
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • Huggett J, Dheda K, Bustin S, Zumla A. Real-time RT-PCR normalisation; strategies and considerations. Genes Immun. 2005;6(4):279–284.
    • (2005) Genes Immun , vol.6 , Issue.4 , pp. 279-284
    • Huggett, J1    Dheda, K2    Bustin, S3    Zumla, A.4
  • 2
    • 21344446363 scopus 로고    scopus 로고
    • Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data
    • Abbas AR, Baldwin D, Ma Y, et al. Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data. Genes Immun. 2005;6(4):319–331.
    • (2005) Genes Immun , vol.6 , Issue.4 , pp. 319-331
    • Abbas, AR1    Baldwin, D2    Ma, Y3
  • 3
    • 0037452790 scopus 로고    scopus 로고
    • Individuality and variation in gene expression patterns in human blood
    • Whitney AR, Diehn M, Popper SJ, et al. Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci U S A. 2003;100(4):1896–1901.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.4 , pp. 1896-1901
    • Whitney, AR1    Diehn, M2    Popper, SJ3
  • 4
    • 38149044364 scopus 로고    scopus 로고
    • Analysis of lymphocyte subsets in patients with stroke and their influence on infection after stroke
    • Vogelgesang A, Grunwald U, Langner S, et al. Analysis of lymphocyte subsets in patients with stroke and their influence on infection after stroke. Stroke. 2008;39(1):237–241.
    • (2008) Stroke , vol.39 , Issue.1 , pp. 237-241
    • Vogelgesang, A1    Grunwald, U2    Langner, S3
  • 5
    • 79651474748 scopus 로고    scopus 로고
    • Leukocyte count affects expression of reference genes in canine whole blood samples
    • Piek CJ, Brinkhof B, Rothuizen J, Dekker A, Penning LC. Leukocyte count affects expression of reference genes in canine whole blood samples. BMC Res Notes. 2011;4:36.
    • (2011) BMC Res Notes , vol.4 , pp. 36
    • Piek, CJ1    Brinkhof, B2    Rothuizen, J3    Dekker, A4    Penning, LC.5
  • 6
    • 69949160041 scopus 로고    scopus 로고
    • Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood
    • Stamova BS, Apperson M, Walker WL, et al. Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood. BMC Med Genomics. 2009;2:49.
    • (2009) BMC Med Genomics , vol.2 , pp. 49
    • Stamova, BS1    Apperson, M2    Walker, WL3
  • 7
    • 65549139459 scopus 로고    scopus 로고
    • Data-driven normalization strategies for high-throughput quantitative RT-PCR
    • Mar JC, Kimura Y, Schroder K, et al. Data-driven normalization strategies for high-throughput quantitative RT-PCR. BMC Bioinformatics. 2009;10:110.
    • (2009) BMC Bioinformatics , vol.10 , pp. 110
    • Mar, JC1    Kimura, Y2    Schroder, K3
  • 8
    • 84874759526 scopus 로고    scopus 로고
    • NORMA-Gene: a simple and robust method for qPCR normalization based on target gene data
    • Heckmann LH, Sørensen PB, Krogh PH, Sørensen JG. NORMA-Gene: a simple and robust method for qPCR normalization based on target gene data. BMC Bioinformatics. 2011;12:250.
    • (2011) BMC Bioinformatics , vol.12 , pp. 250
    • Heckmann, LH1    Sørensen, PB2    Krogh, PH3    Sørensen, JG.4
  • 9
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: from disarray to consolidation and consensus
    • Allison DB, Cui X, Page GP, Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet. 2006;7(1):55–65.
    • (2006) Nat Rev Genet , vol.7 , Issue.1 , pp. 55-65
    • Allison, DB1    Cui, X2    Page, GP3    Sabripour, M.4
  • 10
    • 84904746057 scopus 로고    scopus 로고
    • Evidence for species-specific clock gene expression patterns in hamster peripheral tissues
    • Meyer V, Lerchl A. Evidence for species-specific clock gene expression patterns in hamster peripheral tissues. Gene. 2014;548(1):101–111.
    • (2014) Gene , vol.548 , Issue.1 , pp. 101-111
    • Meyer, V1    Lerchl, A.2
  • 11
    • 84948682687 scopus 로고    scopus 로고
    • Gene expression as an indicator of the molecular response and toxicity in the bacterium Shewanella oneidensis and the water flea Daphnia magna exposed to functionalized gold nanoparticles
    • Qiu TA, Bozich JS, Lohse SE, et al. Gene expression as an indicator of the molecular response and toxicity in the bacterium Shewanella oneidensis and the water flea Daphnia magna exposed to functionalized gold nanoparticles. Environ Sci Nano. 2015;2(6):615–629.
    • (2015) Environ Sci Nano , vol.2 , Issue.6 , pp. 615-629
    • Qiu, TA1    Bozich, JS2    Lohse, SE3
  • 12
    • 84859366514 scopus 로고    scopus 로고
    • Earthworms and humans in vitro: characterizing evolutionarily conserved stress and immune responses to silver nanoparticles
    • Hayashi Y, Engelmann P, Foldbjerg R, et al. Earthworms and humans in vitro: characterizing evolutionarily conserved stress and immune responses to silver nanoparticles. Environ Sci Technol. 2012;46(7):4166–4173.
    • (2012) Environ Sci Technol , vol.46 , Issue.7 , pp. 4166-4173
    • Hayashi, Y1    Engelmann, P2    Foldbjerg, R3
  • 13
    • 85019007967 scopus 로고    scopus 로고
    • Machine-learning approach identifies a pattern of gene expression in peripheral blood that can accurately detect ischaemic stroke
    • O’Connell GC, Petrone AB, Treadway MB, et al. Machine-learning approach identifies a pattern of gene expression in peripheral blood that can accurately detect ischaemic stroke. npj Genomic Med. 2016;1:16038.
    • (2016) npj Genomic Med , vol.1 , pp. 16038
    • O’Connell, GC1    Petrone, AB2    Treadway, MB3
  • 14
    • 0345167147 scopus 로고    scopus 로고
    • Acute ischemic cerebrovascular syndrome: diagnostic criteria
    • Kidwell CS, Warach S. Acute ischemic cerebrovascular syndrome: diagnostic criteria. Stroke. 2003;34(12):2995–2998.
    • (2003) Stroke , vol.34 , Issue.12 , pp. 2995-2998
    • Kidwell, CS1    Warach, S.2
  • 15
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 2001;25(4):402–408.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, KJ1    Schmittgen, TD.2
  • 17
    • 79952709519 scopus 로고    scopus 로고
    • pROC: an open-source package for R and S+ to analyze and compare ROC curves
    • Robin X, Turck N, Hainard A, et al. pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinformatics. 2011;12:77.
    • (2011) BMC Bioinformatics , vol.12 , pp. 77
    • Robin, X1    Turck, N2    Hainard, A3
  • 18
    • 0023710206 scopus 로고
    • Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach
    • DeLong ER, DeLong DM, Clarke-Pearson DL. Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics. 1988;44(3):837–845.
    • (1988) Biometrics , vol.44 , Issue.3 , pp. 837-845
    • DeLong, ER1    DeLong, DM2    Clarke-Pearson, DL.3
  • 19
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm S. A simple sequentially rejective multiple test procedure. Scand J Stat. 1979;6(2):65–70.
    • (1979) Scand J Stat , vol.6 , Issue.2 , pp. 65-70
    • Holm, S.1
  • 20
    • 77957283824 scopus 로고    scopus 로고
    • Genomic biomarkers and cellular pathways of ischemic stroke by RNA gene expression profiling
    • Barr TL, Conley Y, Ding J, et al. Genomic biomarkers and cellular pathways of ischemic stroke by RNA gene expression profiling. Neurology. 2010;75(11):1009–1014.
    • (2010) Neurology , vol.75 , Issue.11 , pp. 1009-1014
    • Barr, TL1    Conley, Y2    Ding, J3
  • 21
    • 84959540199 scopus 로고    scopus 로고
    • The role of arginase 1 in post-stroke immunosuppression and ischemic stroke severity
    • Petrone AB, O’Connell GC, Regier MD, et al. The role of arginase 1 in post-stroke immunosuppression and ischemic stroke severity. Transl Stroke Res. 2016;7(2):103–110.
    • (2016) Transl Stroke Res , vol.7 , Issue.2 , pp. 103-110
    • Petrone, AB1    O’Connell, GC2    Regier, MD3
  • 22
    • 84959545368 scopus 로고    scopus 로고
    • Peripheral blood MCEMP1 gene expression as a biomarker for stroke prognosis
    • Raman K, O’Donnell MJ, Czlonkowska A, et al. Peripheral blood MCEMP1 gene expression as a biomarker for stroke prognosis. Stroke. 2016;47(3):652–658.
    • (2016) Stroke , vol.47 , Issue.3 , pp. 652-658
    • Raman, K1    O’Donnell, MJ2    Czlonkowska, A3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.