-
1
-
-
0029643523
-
Protein folding intermediates: native-state hydrogen exchange
-
Bai, Y. W., T. R. Sosnick, L. Mayne, and S. W. Englander. 1995. Protein folding intermediates: native-state hydrogen exchange. Science 269:192.
-
(1995)
Science
, vol.269
, pp. 192
-
-
Bai, Y.W.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
2
-
-
34447297323
-
Energetics of protein folding
-
Baldwin, R. L. 2007. Energetics of protein folding. J Mol Bio 371:283-301.
-
(2007)
J Mol Bio
, vol.371
, pp. 283-301
-
-
Baldwin, R.L.1
-
3
-
-
0002592178
-
Zinc finger domains: from predictions to design
-
Berg, J. M. 1995. Zinc finger domains: from predictions to design. Acc Chem Res 28:14-19.
-
(1995)
Acc Chem Res
, vol.28
, pp. 14-19
-
-
Berg, J.M.1
-
4
-
-
0028824042
-
Protein design: a hierarchic approach
-
Bryson, J. W., S. F. Betz, H. S. Lu, D. J. Suich, H. X. X. Zhou, K. T. O'Neil, and W. F. DeGrado. 1995. Protein design: a hierarchic approach. Science 270:935-41.
-
(1995)
Science
, vol.270
, pp. 935-941
-
-
Bryson, J.W.1
Betz, S.F.2
Lu, H.S.3
Suich, D.J.4
Zhou, H.X.X.5
O'Neil, K.T.6
DeGrado, W.F.7
-
5
-
-
0028154527
-
Design of a heme-binding four helix bundle
-
Choma, C. T., J. D. Lear, M. J. Nelson, P. L. Dutton, D. E. Robertson, and W. F. DeGrado. 1994. Design of a heme-binding four helix bundle. J Am Chem Soc 116:856-65.
-
(1994)
J Am Chem Soc
, vol.116
, pp. 856-865
-
-
Choma, C.T.1
Lear, J.D.2
Nelson, M.J.3
Dutton, P.L.4
Robertson, D.E.5
DeGrado, W.F.6
-
6
-
-
0000726701
-
Carbonic anhydrase: evolution of the zinc binding site by nature and by design
-
Christianson, D. W., and C. A. Fierke. 1996. Carbonic anhydrase: evolution of the zinc binding site by nature and by design. Acc Chem Res 29: 331-39.
-
(1996)
Acc Chem Res
, vol.29
, pp. 331-339
-
-
Christianson, D.W.1
Fierke, C.A.2
-
7
-
-
0035826776
-
Tryptophan zippers: stable, monomeric ß-hairpins
-
Cochran, A. G., N. J. Skelton, and M. A. Starovasnik. 2001. Tryptophan zippers: stable, monomeric ß-hairpins. Proc Natl Acad Sci U S A 98:5578-83.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 5578-5583
-
-
Cochran, A.G.1
Skelton, N.J.2
Starovasnik, M.A.3
-
8
-
-
0030793767
-
De novo protein design: fully automated sequence selection
-
Dahiyat, B. I., and S. L. Mayo. 1997. De novo protein design: fully automated sequence selection. Science 278 82-87.
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
9
-
-
48249134448
-
The protein folding problem
-
Dill, K. A., S. B. Ozkan, M. S. Shell, and T. R. Weikl. 2008. The protein folding problem. Ann Rev Biophys 37:289-316.
-
(2008)
Ann Rev Biophys
, vol.37
, pp. 289-316
-
-
Dill, K.A.1
Ozkan, S.B.2
Shell, M.S.3
Weikl, T.R.4
-
10
-
-
0037388045
-
Hg(II) binding to a weakly associated coiled coil nucleates an encoded metalloprotein fold: kinetic analysis
-
Farrer, B. T., and V. L. Pecoraro. 2003. Hg(II) binding to a weakly associated coiled coil nucleates an encoded metalloprotein fold: kinetic analysis. Proc Natl Acad Sci U S A 103:3760-65.
-
(2003)
Proc Natl Acad Sci U S A
, vol.103
, pp. 3760-3765
-
-
Farrer, B.T.1
Pecoraro, V.L.2
-
11
-
-
0032873285
-
Histidine placement in de novo designed heme proteins
-
Gibney, B. R., and P. L. Dutton. 1999. Histidine placement in de novo designed heme proteins. Protein Sci 8:1888-98.
-
(1999)
Protein Sci
, vol.8
, pp. 1888-1898
-
-
Gibney, B.R.1
Dutton, P.L.2
-
12
-
-
0030446302
-
Ferredoxin and ferredoxin- heme maquettes
-
Gibney, B. R., S. E. Mulholland, F. Rabanal, and P. L. Dutton. 1996. Ferredoxin and ferredoxin- heme maquettes. Proc Nat Acad Sci U S A 93:15041-46.
-
(1996)
Proc Nat Acad Sci U S A
, vol.93
, pp. 15041-15046
-
-
Gibney, B.R.1
Mulholland, S.E.2
Rabanal, F.3
Dutton, P.L.4
-
13
-
-
0029737827
-
The stability of holomyoglobin is determined by heme affinity
-
Hargrove, M.S., and J. S. Olson. 1996. The stability of holomyoglobin is determined by heme affinity. Biochemistry 35:11310-18.
-
(1996)
Biochemistry
, vol.35
, pp. 11310-11318
-
-
Hargrove, M.S.1
Olson, J.S.2
-
14
-
-
0031441458
-
De novo heme proteins from designed combinatorial libraries
-
Hecht, M. H., K. M. Vogel, T. G. Spiro, N. R. L. Rojas, S. Kamtekar, C. T. Simons, J. E. Mclean, and R. S. Farid. 1997. De novo heme proteins from designed combinatorial libraries. Protein Sci 6:2512-24.
-
(1997)
Protein Sci
, vol.6
, pp. 2512-2524
-
-
Hecht, M.H.1
Vogel, K.M.2
Spiro, T.G.3
Rojas, N.R.L.4
Kamtekar, S.5
Simons, C.T.6
Mclean, J.E.7
Farid, R.S.8
-
15
-
-
0032494418
-
Synthetic type 1 copper design efforts
-
Hellinga, H. W. 1998. Synthetic type 1 copper design efforts. J Am Chem Soc 120:10055-66.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 10055-10066
-
-
Hellinga, H.W.1
-
16
-
-
0035812424
-
Extreme zinc-binding thermodynamics of the metal sensor/regulator protein
-
Hitomi, Y., C. E. Outten, and T. V. O'Halloran 2001. Extreme zinc-binding thermodynamics of the metal sensor/regulator protein, ZntR. J Am Chem Soc 123:8614-15.
-
(2001)
ZntR. J Am Chem Soc
, vol.123
, pp. 8614-8615
-
-
Hitomi, Y.1
Outten, C.E.2
O'Halloran, T.V.3
-
17
-
-
0030946074
-
Purification and characterization of an extracellular heme-binding protein, HasA, involved in heme iron acquisition
-
Izadi, N., Y. Henry, J. Haladjian, M. E. Goldberg, C. Wandersman, M. Delepierre, and A. Lecroisey. 1997. Purification and characterization of an extracellular heme-binding protein, HasA, involved in heme iron acquisition. Biochemistry 36:7050-57.
-
(1997)
Biochemistry
, vol.36
, pp. 7050-7057
-
-
Izadi, N.1
Henry, Y.2
Haladjian, J.3
Goldberg, M.E.4
Wandersman, C.5
Delepierre, M.6
Lecroisey, A.7
-
18
-
-
40449116114
-
De novo computational design of retro-aldol enzymes
-
Jiang, L., E. A. Altoff, F. R. Clemente, L. Doyle, D. Röthlisberger, A. Zanghellini, J. L. Gallaher, J. L. Betker, F. Tanaka, C. F. Barbas, D. Hilvert, K. N. Houk, B. L. Stoddard, and D. Baker. 2008. De novo computational design of retro-aldol enzymes. Science 319:1387-91.
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
Altoff, E.A.2
Clemente, F.R.3
Doyle, L.4
Röthlisberger, D.5
Zanghellini, A.6
Gallaher, J.L.7
Betker, J.L.8
Tanaka, F.9
Barbas, C.F.10
Hilvert, D.11
Houk, K.N.12
Stoddard, B.L.13
Baker, D.14
-
19
-
-
0008863560
-
Some factors in the interpretation of protein denaturation
-
Kauzmann, W. 1959. Some factors in the interpretation of protein denaturation. Adv Protein Chem 14:1-63.
-
(1959)
Adv Protein Chem
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
20
-
-
0027411181
-
Thermodynamic ß-sheet propensities measured using a zinc-finger host peptide
-
Kim, C. K., and J. M. Berg. 1993. Thermodynamic ß-sheet propensities measured using a zinc-finger host peptide. Nature 362:267-70.
-
(1993)
Nature
, vol.362
, pp. 267-270
-
-
Kim, C.K.1
Berg, J.M.2
-
21
-
-
0002006297
-
Are there pathways to protein folding?
-
Levinthal, C. 1968. Are there pathways to protein folding?. J Chim Phys 65:44-45.
-
(1968)
J Chim Phys
, vol.65
, pp. 44-45
-
-
Levinthal, C.1
-
22
-
-
0042697155
-
Spectrophotometric analysis of metal binding to structural zinc-binding sites: accounting quantitatively for pH and metal ion buffering effects
-
Magyar, J. S., and H. Arnold-Godwin. 2003. Spectrophotometric analysis of metal binding to structural zinc-binding sites: accounting quantitatively for pH and metal ion buffering effects. Anal Biochem 320:39-54.
-
(2003)
Anal Biochem
, vol.320
, pp. 39-54
-
-
Magyar, J.S.1
Arnold-Godwin, H.2
-
23
-
-
0024707204
-
Unusual stable helix formation in short alanine-based peptides
-
Marqusee, S., V. H. Robbins, and R. L. Baldwin. 1989. Unusual stable helix formation in short alanine-based peptides. Proc Natl Acad Sci U S A 86 (14):5286-90.
-
(1989)
Proc Natl Acad Sci U S A
, vol.86
, Issue.14
, pp. 5286-5290
-
-
Marqusee, S.1
Robbins, V.H.2
Baldwin, R.L.3
-
24
-
-
0025222978
-
A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids
-
O'Neil, K. T., and W. F. DeGrado. 1990. A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids. Science 250:646-51.
-
(1990)
Science
, vol.250
, pp. 646-651
-
-
O'Neil, K.T.1
DeGrado, W.F.2
-
25
-
-
33846133525
-
Femtomolar Zn(II) affinity in a peptide ligand designed to model thiolate-rich metalloprotein active sites
-
Petros, A. K., A. R. Reddi, M. L. Kennedy, A. G. Hyslop, and B. R. Gibney. 2006. Femtomolar Zn(II) affinity in a peptide ligand designed to model thiolate-rich metalloprotein active sites. Inorg Chem 45:9941-58.
-
(2006)
Inorg Chem
, vol.45
, pp. 9941-9958
-
-
Petros, A.K.1
Reddi, A.R.2
Kennedy, M.L.3
Hyslop, A.G.4
Gibney, B.R.5
-
26
-
-
0037134818
-
Nonnatural amino acid ligands in heme protein design
-
Privett, H.K., C. J. Reedy, M. L. Kennedy, B. R. Gibney. 2002. Nonnatural amino acid ligands in heme protein design. J Am Chem Soc 124:6828-29.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 6828-6829
-
-
Privett, H.K.1
Reedy, C.J.2
Kennedy, M.L.3
Gibney, B.R.4
-
27
-
-
33947649085
-
The role of protons in the thermodynamic contribution of a Zn(II)-Cys4 site toward protein stability
-
Reddi, A. R., and B. R. Gibney. 2007. The role of protons in the thermodynamic contribution of a Zn(II)-Cys4 site toward protein stability. Biochemistry 46:3745-58.
-
(2007)
Biochemistry
, vol.46
, pp. 3745-3758
-
-
Reddi, A.R.1
Gibney, B.R.2
-
28
-
-
35548991935
-
Deducing the energetic cost of protein folding in zinc finger proteins using designed metallopeptides
-
Reddi, A. R., T. Guzman, R. M. Breece, D. L. Tierney, and B. R. Gibney. 2007. Deducing the energetic cost of protein folding in zinc finger proteins using designed metallopeptides. J Am Chem Soc 129:12815-27.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 12815-12827
-
-
Reddi, A.R.1
Guzman, T.2
Breece, R.M.3
Tierney, D.L.4
Gibney, B.R.5
-
29
-
-
33846099581
-
Thermodynamic investigation into the mechanisms of proton-coupled electron transfer in heme protein maquettes
-
Reddi, A.R., C. J. Reedy, S. Mui, and B. R. Gibney. 2007. Thermodynamic investigation into the mechanisms of proton-coupled electron transfer in heme protein maquettes. Biochemistry 46:291-305.
-
(2007)
Biochemistry
, vol.46
, pp. 291-305
-
-
Reddi, A.R.1
Reedy, C.J.2
Mui, S.3
Gibney, B.R.4
-
30
-
-
1542274547
-
Heme-protein assemblies
-
Reedy, C. J., and B. R. Gibney. 2004. Heme-protein assemblies. Chem Rev 101:617-49.
-
(2004)
Chem Rev
, vol.101
, pp. 617-649
-
-
Reedy, C.J.1
Gibney, B.R.2
-
31
-
-
0037424025
-
Thermodynamic characterization of ferric and ferrous haem binding to a designed four-a-helix protein
-
Reedy, C. J., M. L. Kennedy, and B. R. Gibney. 2003. Thermodynamic characterization of ferric and ferrous haem binding to a designed four-a-helix protein. Chem Commun 570-71.
-
(2003)
Chem Commun
, pp. 570-571
-
-
Reedy, C.J.1
Kennedy, M.L.2
Gibney, B.R.3
-
32
-
-
0025644594
-
A tetrahedral zinc (II)-binding site introduced into a designed protein
-
Regan, L., and N. D. Clarke. 1990. A tetrahedral zinc (II)-binding site introduced into a designed protein. Biochemistry 29:10878-83.
-
(1990)
Biochemistry
, vol.29
, pp. 10878-10883
-
-
Regan, L.1
Clarke, N.D.2
-
33
-
-
0028281579
-
Design and synthesis of multi-haem proteins
-
Robertson, D. E., R. S. Farid, C. C. Moser, J. L. Urbauer, S. E. Mulholland, R. Pidikiti, J. D. Lear, A. J. Wand, W. F. DeGrado, and P. L. Dutton. 1994. Design and synthesis of multi-haem proteins. Nature 368:425-32.
-
(1994)
Nature
, vol.368
, pp. 425-432
-
-
Robertson, D.E.1
Farid, R.S.2
Moser, C.C.3
Urbauer, J.L.4
Mulholland, S.E.5
Pidikiti, R.6
Lear, J.D.7
Wand, A.J.8
DeGrado, W.F.9
Dutton, P.L.10
-
34
-
-
0000505830
-
Reductive cleavage of disulfide bridges in ribonuclease
-
Sela, M., F. H. White Jr., and C. B. Anfinsen. 1957. Reductive cleavage of disulfide bridges in ribonuclease. Science 125:691-92.
-
(1957)
Science
, vol.125
, pp. 691-692
-
-
Sela, M.1
White, F.H.2
Anfinsen, C.B.3
-
35
-
-
65949110356
-
Cooperative metal binding and helical folding in model peptides of treble-clef zinc fingers
-
Sénèque, O., E. Bonnet, F. L. Joumas, and J.-M. Latour. 2009. Cooperative metal binding and helical folding in model peptides of treble-clef zinc fingers. Chem Eur J 19:4798-4810.
-
(2009)
Chem Eur J
, vol.19
, pp. 4798-4810
-
-
Sénèque, O.1
Bonnet, E.2
Joumas, F.L.3
Latour, J.-M.4
-
36
-
-
0032558105
-
Differential binding of iron (III) and zinc (II) protoporphyrin IX to synthetic four-helix bundles
-
Sharp, R. E., J. R. Diers, D. F. Bocian, and P. L. Dutton. 1998. Differential binding of iron (III) and zinc (II) protoporphyrin IX to synthetic four-helix bundles. J Am Chem Soc 120:7103-4.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 7103-7104
-
-
Sharp, R.E.1
Diers, J.R.2
Bocian, D.F.3
Dutton, P.L.4
-
37
-
-
0033890176
-
Hemin is kinetically trapped in cytochrome b5 from rat outer mitochondrial membrane
-
Silchenko, S., M. L. Sippel, O. Kuchment, D. R. Benson, A. G. Mauk, A. Altuve, and M. Rivera. 2000. Hemin is kinetically trapped in cytochrome b5 from rat outer mitochondrial membrane. Biochem Biophys Res Commun 5:467-72.
-
(2000)
Biochem Biophys Res Commun
, vol.5
, pp. 467-472
-
-
Silchenko, S.1
Sippel, M.L.2
Kuchment, O.3
Benson, D.R.4
Mauk, A.G.5
Altuve, A.6
Rivera, M.7
-
38
-
-
0029990293
-
The role of helix formation in the folding of a fully alpha-helical protein
-
Sosnick, T. R., S. Jackson, R. M. Wilk, S. W. Englander, and W. F. DeGrado. 1996. The role of helix formation in the folding of a fully alpha-helical protein. Proteins 24:427-32.
-
(1996)
Proteins
, vol.24
, pp. 427-432
-
-
Sosnick, T.R.1
Jackson, S.2
Wilk, R.M.3
Englander, S.W.4
DeGrado, W.F.5
-
39
-
-
0030567375
-
Economy in protein design: evolution of a metal-independent ßßa motif based on the zinc finger domains
-
Struthers, M. D., R. P. Cheng, and B. Imperiali. 1996. Economy in protein design: evolution of a metal-independent ßßa motif based on the zinc finger domains. J Am Chem Soc 118:3073-81.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 3073-3081
-
-
Struthers, M.D.1
Cheng, R.P.2
Imperiali, B.3
-
40
-
-
33746778902
-
The structure of a designed diiron(III) protein: implications for cofactor stabilization and catalysis
-
Wade, H., S. E. Stayrook, and W. F. DeGrado. 2006. The structure of a designed diiron(III) protein: implications for cofactor stabilization and catalysis. Angew Chem Int Ed Engl 45 (30):4951-54.
-
(2006)
Angew Chem Int Ed Engl
, vol.45
, Issue.30
, pp. 4951-4954
-
-
Wade, H.1
Stayrook, S.E.2
DeGrado, W.F.3
-
41
-
-
0036394906
-
Native-like mean structure in the unfolded ensemble of small proteins
-
Zagrovic, B., C. D. Snow, S. Khaliq, M. R. Shirts, and V. S. Pande. 2002. Native-like mean structure in the unfolded ensemble of small proteins. J Mol Bio 323:153-64.
-
(2002)
J Mol Bio
, vol.323
, pp. 153-164
-
-
Zagrovic, B.1
Snow, C.D.2
Khaliq, S.3
Shirts, M.R.4
Pande, V.S.5
-
42
-
-
11144288653
-
Design of a five-coordinate heme protein maquette: a spectroscopic model of deoxymyoglobin
-
Zhuang, J., J. H. Amoroso, R. Kinloch, J. H. Dawson, M. J. Baldwin, and B. R. Gibney. 2004. Design of a five-coordinate heme protein maquette: a spectroscopic model of deoxymyoglobin. Inorg Chem 43:8218-20.
-
(2004)
Inorg Chem
, vol.43
, pp. 8218-8220
-
-
Zhuang, J.1
Amoroso, J.H.2
Kinloch, R.3
Dawson, J.H.4
Baldwin, M.J.5
Gibney, B.R.6
-
43
-
-
33750065106
-
Evaluating the roles of the heme a sidechains in cytochrome c oxidase using designed heme proteins
-
Zhuang, J., J. H. Amoroso, R. Kinloch, J. H. Dawson, M. J. Baldwin, and B. R. Gibney. 2006. Evaluating the roles of the heme a sidechains in cytochrome c oxidase using designed heme proteins. Biochemistry 45:12530-38.
-
(2006)
Biochemistry
, vol.45
, pp. 12530-12538
-
-
Zhuang, J.1
Amoroso, J.H.2
Kinloch, R.3
Dawson, J.H.4
Baldwin, M.J.5
Gibney, B.R.6
-
44
-
-
33745684585
-
Evaluation of electron-withdrawing group effects on heme binding in designed proteins: Implications for heme a in cytochrome c oxidase
-
Zhuang, J., J. H. Amoroso, R. Kinloch, J. H. Dawson, M. J. Baldwin, and B. R. Gibney. 2006. Evaluation of electron-withdrawing group effects on heme binding in designed proteins: Implications for heme a in cytochrome c oxidase. Inorg Chem 45:4685-94.
-
(2006)
Inorg Chem
, vol.45
, pp. 4685-4694
-
-
Zhuang, J.1
Amoroso, J.H.2
Kinloch, R.3
Dawson, J.H.4
Baldwin, M.J.5
Gibney, B.R.6
|