메뉴 건너뛰기




Volumn 86, Issue , 2018, Pages 78-83

Improved protein contact predictions with the MetaPSICOV2 server in CASP12

Author keywords

bioinformatics; contact prediction; machine learning; meta prediction

Indexed keywords

ARTICLE; ARTIFICIAL NEURAL NETWORK; COMPUTER PREDICTION; CRITICAL ASSESSMENT OF PROTEIN STRUCTURE PREDICTION 11; CRITICAL ASSESSMENT OF PROTEIN STRUCTURE PREDICTION 12; PERFORMANCE; PREDICTOR VARIABLE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; SOFTWARE; ALGORITHM; BIOLOGY; CHEMISTRY; HUMAN; INTERNET; MACHINE LEARNING; MOLECULAR MODEL; PROCEDURES; PROTEIN CONFORMATION; X RAY CRYSTALLOGRAPHY;

EID: 85030645219     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.25379     Document Type: Article
Times cited : (46)

References (14)
  • 1
    • 85042278301 scopus 로고    scopus 로고
    • EigenTHREADER: Analogous protein fold recognition by efficient contact map threading
    • Buchan DWA, Jones DT. EigenTHREADER: Analogous protein fold recognition by efficient contact map threading. Bioinformatics. 2017;33(17):2684–2690.
    • (2017) Bioinformatics. , vol.33 , Issue.17 , pp. 2684-2690
    • Buchan, D.W.A.1    Jones, D.T.2
  • 2
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR. Profile hidden Markov models. Bioinformatics. 1998;14(9):755–763.
    • (1998) Bioinformatics. , vol.14 , Issue.9 , pp. 755-763
    • Eddy, S.R.1
  • 3
    • 84856090271 scopus 로고    scopus 로고
    • PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
    • Jones DT, Buchan DWA, Cozzetto D, Pontil M. PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments. Bioinformatics. 2012;28(2):184–190.
    • (2012) Bioinformatics. , vol.28 , Issue.2 , pp. 184-190
    • Jones, D.T.1    Buchan, D.W.A.2    Cozzetto, D.3    Pontil, M.4
  • 4
    • 84929144039 scopus 로고    scopus 로고
    • MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
    • Jones DT, Singh T, Kosciolek T, Tetchner S. MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins. Bioinformatics. 2015;31(7):999–1006.
    • (2015) Bioinformatics. , vol.31 , Issue.7 , pp. 999-1006
    • Jones, D.T.1    Singh, T.2    Kosciolek, T.3    Tetchner, S.4
  • 5
    • 84899072164 scopus 로고    scopus 로고
    • FreeContact: fast and free software for protein contact prediction from residue co-evolution
    • Kaján L, Hopf TA, Kalas M, Marks DS, Rost B. FreeContact: fast and free software for protein contact prediction from residue co-evolution. BMC Bioinformatics. 2014;15:85.
    • (2014) BMC Bioinformatics. , vol.15 , pp. 85
    • Kaján, L.1    Hopf, T.A.2    Kalas, M.3    Marks, D.S.4    Rost, B.5
  • 7
    • 84939515755 scopus 로고    scopus 로고
    • Accurate contact predictions using covariation techniques and machine learning
    • Kosciolek T, Jones DT. Accurate contact predictions using covariation techniques and machine learning. Proteins. 2016;84 Suppl 1:145–151.
    • (2016) Proteins. , vol.84 , pp. 145-151
    • Kosciolek, T.1    Jones, D.T.2
  • 8
    • 84897393474 scopus 로고    scopus 로고
    • MRFalign: protein homology detection through alignment of Markov random fields
    • Ma J, Wang S, Wang Z, Xu J. MRFalign: protein homology detection through alignment of Markov random fields. PLoS Comput Biol. 2014;10(3):e1003500.
    • (2014) PLoS Comput Biol. , vol.10 , Issue.3
    • Ma, J.1    Wang, S.2    Wang, Z.3    Xu, J.4
  • 9
    • 82855163967 scopus 로고    scopus 로고
    • Protein 3D structure computed from evolutionary sequence variation
    • Marks DS, Colwell LJ, Sheridan R, et al. Protein 3D structure computed from evolutionary sequence variation. PLoS One. 2011;6(12):e28766.
    • (2011) PLoS One. , vol.6 , Issue.12
    • Marks, D.S.1    Colwell, L.J.2    Sheridan, R.3
  • 10
    • 83755178457 scopus 로고    scopus 로고
    • Direct-coupling analysis of residue coevolution captures native contacts across many protein families
    • Morcos F, Pagnani A, Lunt B, et al. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proc Natl Acad Sci U S A. 2011;108(49):E1293–E1301.
    • (2011) Proc Natl Acad Sci U S A. , vol.108 , Issue.49 , pp. E1293-E1301
    • Morcos, F.1    Pagnani, A.2    Lunt, B.3
  • 11
    • 84856489442 scopus 로고    scopus 로고
    • HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
    • Remmert M, Biegert A, Hauser A, Söding J. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods. 2011;9(2):173–175.
    • (2011) Nat Methods. , vol.9 , Issue.2 , pp. 173-175
    • Remmert, M.1    Biegert, A.2    Hauser, A.3    Söding, J.4
  • 12
    • 84911444768 scopus 로고    scopus 로고
    • CCMpred: fast and precise prediction of protein residue-residue contacts from correlated mutations
    • Seemayer S, Gruber M, Söding J. CCMpred: fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinformatics. 2014;30(21):3128–3130.
    • (2014) Bioinformatics. , vol.30 , Issue.21 , pp. 3128-3130
    • Seemayer, S.1    Gruber, M.2    Söding, J.3
  • 13
    • 84912100015 scopus 로고    scopus 로고
    • Improved contact predictions using the recognition of protein like contact patterns
    • Skwark MJ, Raimondi D, Michel M, Elofsson A. Improved contact predictions using the recognition of protein like contact patterns. PLoS Comput Biol. 2014;10(11):e1003889.
    • (2014) PLoS Comput Biol. , vol.10 , Issue.11
    • Skwark, M.J.1    Raimondi, D.2    Michel, M.3    Elofsson, A.4
  • 14
    • 84893024755 scopus 로고    scopus 로고
    • Assessment of CASP10 contact-assisted predictions
    • Taylor TJ, Bai H, Tai CH, Lee B. Assessment of CASP10 contact-assisted predictions. Proteins. 2014;82(Suppl 2):84–97.
    • (2014) Proteins. , vol.82 , pp. 84-97
    • Taylor, T.J.1    Bai, H.2    Tai, C.H.3    Lee, B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.