Erratum: Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm (Annals of Botany (2016) 118 (763-776) DOI: 10.1093/aob/mcw101);Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm

Annals of Botany

Volumn 118, Issue 4, 2016, Pages 763-776

  Pacheco Escobedo, Mario A ^a   Ivanov, Victor B ^b   Ransom Rodríguez, Iván ^a   Arriaga Mejía, Germán ^c   Ávila, Hibels ^c   Baklanov, Ilya A ^b   Pimentel, Arturo ^d   Corkidi, Gabriel ^d   Doerner, Peter ^e   Dubrovsky, Joseph G ^a   Álvarez Buylla, Elena R ^a   Garay Arroyo, Adriana ^a  

^a INSTITUTO DE ECOLOGÍA   (Mexico)

^b TIMIRYAZEV INSTITUTE OF PLANT PHYSIOLOGY   (Russian Federation)

^c INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

^d INSTITUTO DE BIOTECNOLOGÍA   (Mexico)

^e UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Arabidopsis thaliana; Breakpoints; Cell differentiation; Cell proliferation; Critical size of dividing cells; Elongation zone; Longitudinal zonation pattern; Multiple structural change model; Proliferation domain; Root apical meristem; Transition domain; XAANTAL1

Indexed keywords

ALGORITHM; BIOLOGICAL DEVELOPMENT; DEVELOPMENTAL BIOLOGY; DIFFERENTIATION; ECOZONE; EXPERIMENTAL STUDY; HERB; IDENTIFICATION METHOD; MUTATION; NUMERICAL MODEL; ROOT;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 85029589986     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcw251     Document Type: Erratum

References (69)

1. Achard P, Gusti A, Cheminant S, et al, 2009. Gibberellin signaling controls cell proliferation rate in Arabidopsis. Current biology 19: 1188-1193.
2. Aida M, Beis D, Heidstra R, Willemsen V. 2004. The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell 119: 109-120.
3. Auger IE, Lawrence CE 1989. Algorithms for the optimal identification of segmented neighborhoods. Bulletin of Mathematical Biology 51: 39-54.
4. Bai J. 1997. Estimation of a change point in multiple regression models. Review of Economics and Statistics 79: 551-563.
5. Bai J, Perron P. 1998. Estimating and testing linear models with multiple structural changes. Econometrica 66: 47-78.
6. Bai J, Perron P. 2003. Computation and analysis of multiple structural change models. Journal of Applied Econometrics 18: 1-22.
7. Baluska F, Mancuso S. 2013. Root apex transition zone as oscillatory zone. Frontiers in Plant Science 4: 354.
8. Baluska F, Volkmann D, Barlow PW 1996. Specialized zones of development in roots: view from the cellular level. Plant Physiology 112: 3-4.
9. Baluska F, Mancuso S, Volkmann D, Barlow PW 2010. Root apex transition zone: a signalling-response nexus in the root. Trends in Plant Science 15: 402-408.
10. Baskin TI. 2000. On the constancy of cell division rate in the root meristem. Plant Molecular Biology 43: 545-554.
11. Beemster GT, Baskin TI 1998. Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thaliana. Plant Physiology 116: 1515-1526.
12. Casamitjana-Martínez E, Hofhuis HF, Xu J, Liu C-M, Heidstra R, Scheres B. 2003. Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance. Current Biology 13: 1435-1441.
13. Cicchetti D.V. 1994. Guidelines, criteria, and rules of thumb for evaluating normed and standardized assessment instruments in psychology. Psychological Assessment 6: 284-290.
14. Clowes FAL. 1956. Nucleic acids in root apical meristems of Zea. New Phytologist 55: 29-34.
15. Colon-Carmona A, You R, Haimovitch-Gal T, Doerner P. 1999. Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein. Plant Journal 20: 503-508.
16. Cruz-Ramírez A, Díaz-Triviño S, et al. 2012. A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell 150: 1002-1015.
17. Dobrochaev AE, Ivanov VB 2001. Variations in the size of mitotic cells in the root meristem. Ontogenez 32: 252-262.
18. Dolan L, Davies J. 2004. Cell expansion in roots. Current Opinion in Plant Biology 7: 33-39.
19. Dolan L, Janmaat K, Willemsen V, et al 1993. Cellular organisation of the Arabidopsis thaliana root. Development 119: 71-84.
20. Dolznig H, Grebien F, Sauer T, Beug H, Müllner EW.. 2004. Evidence for a size-sensing mechanism in animal cells. Nature Cell Biology 6: 899-905.
21. Dubrovsky JG. 1997. Determinate primary-root growth in seedlings of Sonoran Desert Cactaceae; its organization, cellular basis, and ecological significance. Planta 203: 85-92.
22. Dubrovsky J, Contreras-Burciaga L, Ivanov VB 1998a. Cell cycle duration in the root meristem of Sonoran Desert Cactaceae as estimated by cell-flow and rate-of-cell-production methods. Annals of Botany 81: 619-624.
23. Dubrovsky J, North G, Nobel P. 1998b. Root growth, developmental changes in the apex, and hydraulic conductivity for Opuntia ficus-indica during drought. New Phytologist 138: 75-82.
24. French AP, Wilson MH, Kenobi K, et al 2012. Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape. Plant Methods 8: 7.
25. Galinha C, Hofhuis H, Luijten M, et al 2007. PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature 449: 1053-1057.
26. Garay-Arroyo A, Ortiz-Moreno E, de la Paz Sanchez M, et al. 2013. The MADS transcription factor XAL2/AGL14 modulates auxin transport during Arabidopsis root development by regulating PIN expression. EMBO Journal 32: 2884-2895.
27. González-García M-P, Vilarrasa-Blasi J, Zhiponova M, et al. 2011. Brassinosteroids control meristem size by promoting cell cycle progression in Arabidopsis roots. Development 138: 849-859.
28. Green PB. 1976. Growth and cell pattern formation on an axis: critique of concepts, terminology, and modes of study. Botanical Gazette 137: 187-202.
29. Hallgren K. 2012. Computing inter-rater reliability for observational data: an overview and tutorial. Tutorials in Quantitative Methods for Psychology 8: 23-34.
30. Hauser MT, Bauer E. 2000. Histochemical analysis of root meristem activity in Arabidopsis thaliana using a cyclin: GUS (ß-glucuronidase) marker line. Plant and Soil 226: 1-10.
31. Hayashi K, Hasegawa J, Matsunaga S. 2013. The boundary of the meristematic and elongation zones in roots: endoreduplication precedes rapid cell expansion. Scientific Reports 3: 2723.
32. Hejnowicz Z. 1959. Growth and cell division in the apical meristem of wheat roots. Physiologia Plantarum 12: 124-138.
33. Hejnowicz Z, Brodzki VY 1960. The growth of root cells as the function of time and their position in the root. Acta Societatis Botanicorum Poloniae 29: 625-644.
34. Herr JM Jr. 1971. A new clearing-squash technique for the study of ovule development in angiosperms. American Journal of Botany 58: 785-790.
35. Dello Ioio R, Linhares FS, Scacchi E, et al 2007. Cytokinins determine Arabidopsis root-meristem size by controlling cell differentiation. Current Biology 17: 678-682.
36. Ivanov VB. 1971. Critical size and transition of cell to division. Successive transition of sister cells to mitosis and obligatory transition of cell to mitosis in the root tip of maize germling. Ontogenez 2: 524-535.
37. Ivanov VB, Dubrovsky JG 2013. Longitudinal zonation pattern in plant roots: conflicts and solutions. Trends in Plant Science 18: 237-243.
38. Ivanov VB, Maximov VN 1999. The change in the relative rate of cell elongation along the root meristem and the apical region of the elongation zone. Russian Journal of Plant Physiology 46: 73-82.
39. Kim H-J, Fay MP, Feuer EJ, Midthune DN 2000. Permutation tests for join-point regression with applications to cancer rates. Statistics in Medicine 19: 335-351.
40. Kim H-J, Yu B, Feuer EJ 2009. Selecting the number of change-points in segmented line regression. Statistica Sinica 19: 597-609.
41. Li C, Potuschak T, Colon-Carmona A, Gutierrez RA, Doerner P. 2005. Arabidopsis TCP20 links regulation of growth and cell division control pathways. Proceedings of the National Academy of Sciences of the USA 102: 12978-12983.
42. Li G, Xue H-W. 2007. Arabidopsis PLDζ2 regulates vesicle trafficking and is required for auxin response. The Plant Cell 19: 281-295.
43. Liu J, Wu S, Zidek J V. 1997. On segmented multivariate regression. Statistica Sinica 7:497-525.
44. Ma Z, Baskin TI, Brown KM, Lynch JP 2003. Regulation of root elongation under phosphorus stress involves changes in ethylene responsiveness. Plant Physiology 131: 1381-1390.
45. Makkena S, Lamb RS 2013. The bHLH transcription factor SPATULA regulates root growth by controlling the size of the root meristem. BMC Plant Biology 13: 1.
46. Malamy JE, Benfey PN 1997. Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 124: 33-44.
47. Mancuso S, Marras AM, Mugnai S, et al 2007. Phospholipase Dζ2 drives vesicular secretion of auxin for its polar cell-cell transport in the transition zone of the root apex. Plant Signaling & Behavior 2: 240-244.
48. Matthias G, Jim L, Ian F, Puspendra S. 2012. irr: Various coefficients of interrater reliability and agreement. R package version 0.84. https://cran.r-project.org/package=irr.
49. McGraw KO, Wong SP 1996. Forming inferences about some intraclass correlation coefficients. Psychological Methods 1: 30-46.
50. Moubayidin L, Perilli S, Dello Ioio R, Di Mambro R, Costantino P, Sabatini S. 2010. The rate of cell differentiation controls the Arabidopsis root meristem growth phase. Current Biology 20: 1138-1143.
51. Muggeo VMR. 2003. Estimating regression models with unknown break-points. Statistics in Medicine 22: 3055-3071.
52. Robert L, Hoffmann M, Krell N, Aymerich S, Robert J, Doumic M. 2014. Division in Escherichia coli is triggered by a size-sensing rather than a timing mechanism. BMC Biology 12: 17.
53. Rost T, Baum S. 1988. On the correlation of primary root length, meristem size and protoxylem tracheary element position in pea seedlings. American Journal of Botany 75:414-424.
54. Sabatini S, Heidstra R, Wildwater M, Scheres B. 2003. SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem. Genes & Development 17: 354-8.
55. Silk WK, Hsiao TC, Diedenhofen U, Matson C. 1986. Spatial distributions of potassium, solutes, and their deposition rates in the growth zone of the primary corn root. Plant Physiology 82: 853-858.
56. Takahashi N, Kajihara T, Okamura C, et al 2013. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Current Biology 23: 1812-1817.
57. Tapia-Lopez R, García-Ponce B, Dubrovsky JG, et al. 2008. An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis. Plant Physiology 146: 1182-1192.
58. Ticconi CA, Delatorre CA, Lahner B, Salt DE, Abel S. 2004. Arabidopsis pdr2 reveals a phosphate-sensitive checkpoint in root development. Plant Journal 37: 801-814.
59. Tsukagoshi H, Busch W, Benfey PN 2010. Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell 143: 606-616.
60. Turner JJ, Ewald JC, Skotheim JM 2012. Cell size control in yeast. Current Biology 22: R350-R359.
61. Ubeda-Tomás S, Federici F, Casimiro I, et al. 2009. Gibberellin signaling in the endodermis controls Arabidopsis root meristem size. Current Biology 19: 1194-1199.
62. Vanstraelen M, Baloban M, Da Ines O, et al 2009. APC/C-CCS52A complexes control meristem maintenance in the Arabidopsis root. Proceedings of the National Academy of Sciences of the USA 106: 11806-11811.
63. Verbelen J-P, De Cnodder T, Le J, Vissenberg K, Baluska F. 2006. The root apex of Arabidopsis thaliana consists of four distinct zones of growth activities: meristematic zone, transition zone, fast elongation zone and growth terminating zone. Plant Signaling & Behavior 1: 296-304.
64. van der Weele C, Jiang H, Palaniappan K, Ivanov V, Palaniappan K, Baskin T. 2003. A new algorithm for computational image analysis of deformable motion at high spatial and temporal resolution applied to root growth. Roughly uniform elongation in the meristem and also, after an abrupt acceleration, in the elongation zone. Plant Physiology 132: 1138-1148.
65. Yang L, Han Z, MacLellan WR, Weiss JN, Qu Z. 2006. Linking cell division to cell growth in a spatiotemporal model of the cell cycle. Journal of Theoretical Biology 241: 120-133.
66. Yao Y-C. 1988. Estimating the number of change-points via Schwarz' criterion. Statistics & Probability Letters 6: 181-189.
67. Zeileis A, Leisch F, Hornik K, Kleiber C. 2002. strucchange: An R package for testing for structural change in linear regression models. Journal of Statistical Software 7: 1-38.
68. Zeileis A, Kleiber C, Walter K, Hornik K. 2003. Testing and dating of structural changes in practice. Computational Statistics and Data Analysis 44: 109-123.
69. Zhou X, Li Q, Chen X, et al 2011. The Arabidopsis RETARDED ROOT GROWTH gene encodes a mitochondria-localized protein that is required for cell division in the root meristem. Plant Physiology 157: 1793-1804.