A new algorithm for computational image analysis of deformable motion at high spatial and temporal resolution applied to root growth. Roughly uniform elongation in the meristem and also, after an abrupt acceleration, in the elongation zone

Plant Physiology

Volumn 132, Issue 3, 2003, Pages 1138-1148

  Van Der Weele, Corine M ^a,d   Jiang, Hai S ^b   Palaniappan, Krishnan K ^a,e   Ivanov, Viktor B ^c   Palaniappan, Kannapan ^b   Baskin, Tobias I ^a  

^a UNIVERSITY OF MISSOURI   (United States)

^b University of Missouri   (United States)

^c TIMIRYAZEV INSTITUTE OF PLANT PHYSIOLOGY   (Russian Federation)

^d UNIVERSITY OF MARYLAND   (United States)

^e CARNEGIE MELLON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; CELLS; COMPUTER SOFTWARE; DEFORMATION; OPTICAL FLOWS; PLANTS (BOTANY);

MORPHOGENESIS;

IMAGE ANALYSIS;

ALYSSUM; ARABIDOPSIS; AURINIA SAXATILIS; LACTUCA; LACTUCA SATIVA; LYCOPERSICON ESCULENTUM; LYCOPERSICON LYCOPERSICUM; PHLEUM PRATENSE;

EID: 0037700976     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.021345     Document Type: Article

References (55)

1. Barron JL, Liptay A (1994) Optical flow to measure minute increments in plant growth. Bioimaging 2: 57-61
2. Barton JL, Liptay A (1997) Measuring 3-D plant growth using optical flow. Bioimaging 5: 82-86
3. Baskin TI (2000) On the constancy of cell division rate in the root meristem. Plant Mol Biol 43: 545-554
4. Baskin TI, Wilson JE (1997) Inhibitors of protein kinases and phosphatases alter root morphology and disorganize cortical microtubules. Plant Physiol 113: 493-502
5. Beauchemin SS, Barron JL (1995) The computation of optical flow. ACM Comput Surv 27: 433-467
6. Beemster GTS, Baskin TI (1998) Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thaliana. Plant Physiol 116: 1515-1526
7. Black MJ, Anandan P (1996) The robust estimation of multiple motions: parametric and piece-wise smooth flow fields. Comput Vision Image Understanding 63: 75-104
8. Black M, Jepson AD (1996) Estimating optical flow in segmented images using variable-order parametric models with local deformations. IEEE Trans Pattern Anal Machine Intell 18: 972-986
9. Black MJ, Rangarajan A (1996) On the unification of line processes, outlier rejection, and robust statistics with applications in early vision. Int J Computer Vision 19: 57-91
10. Brumfield RT (1942) Cell growth and division in living root meristems. Am J Bot 29: 533-543
11. Degli Agosti R, Jouve L, Greppin H (1997) Computer-assisted measurements of plant growth with linear variable differential transformer (LVDT) sensors. Arch Sci Genève 50: 233-244
12. Dormann D, Siegert F, Weijer CJ (1996) Analysis of cell movement during the culmination phase of dictyostelium movement. Development 122: 761-769
13. Dormann D, Weijer C, Siegert F (1997) Twisted scroll waves organize Dictyostelium mucoroides slugs. J Cell Sci 110: 1831-1837
14. Erickson RO (1976) Modeling of plant growth. Ann Rev Plant Physiol 27: 407-434
15. Erickson RO, Sax K (1956) Elemental growth rate of the primary root of Zea mays. Proc Am Philos Soc 100: 487-498
16. Farnebäck G (2000) Fast and accurate motion estimation using orientation tensors and parametric motion models. In A Sanfelieu, ed, Proceedings of the 15th International Conference on Pattern Recognition, Barcelona, Spain, Vol 1. IEEE Computational Society, Los Alamitos, CA, pp 135-139
17. Fennema C, Thompson W (1979) Velocity determination in scenes containing several moving objects. Comput Graphics Image Proc 9: 301-315
18. Fox MD, Puffer (1976) Analysis of transient plant movements by holographic interferometry. Nature 261: 488-490
19. Frensch J (1997) Primary responses of root and leaf elongation to water deficits in the atmosphere and soil solution. J Exp Bot 48: 985-999
20. Germain F, Doisy A, Ronot X, Tracqui P (1999) Characterization of cell deformation and migration using a parametric estimation of image motion. IEEE Trans Biomed Eng 46: 584-599
21. Gibson J (1966) The Senses Considered as Perceptual Systems. Houghton Mifflin, Boston
22. Goodwin RH, Stepka W (1945) Growth and differentiation in the root tip of Phleum pratense. Am J Bot 32: 36-46
23. Green PB (1976) Growth and cell pattern formation on an axis: critique of concepts, terminology and modes of study. Bot Gaz 137: 187-202
24. Haußecker H, Jähne B (1997) A tensor approach for precise computation of dense displacement vector fields. In A Sanfelieu, ed, Proceedings of the Mustererkennung DAGM Symposium. Springer, Germany, Braunschweig, pp 199-208
25. Hejnowicz Z (1959) Growth and cell division in the apical meristem of wheat roots. Physiol Plant 12: 124-138
26. Horn BKP, Schunck BG (1981) Determining optical flow. Art Intel 17: 185-204
27. Hsiao TC, Acevedo E, Henderson DW (1970). Maize leaf elongation: continuous measurements and the dependence on plant water status. Science 168: 590-591
28. Ishikawa H, Hasenstein KH, Evans ML (1991) Computer-based video digitizer analysis of surface extension in maize roots. Planta 183: 381-390
29. Ivanov VB, Dobroahaev AE, Baskin TI (2002) What the distribution of cell lengths in the root meristem does, and does not, reveal about cell division. J Plant Growth Regul 21: 60-67
30. Ivanov VB, Maximov VN (1999) The change in the relative rate of cell elongation along the root meristem and the apical region of the elongation zone. Russ J Plant Physiol 46: 73-82
31. Jähne B (1997) Motion. In Digital Image Processing, Ed 4. Springer, Berlin, pp 395-450
32. Jiang H, Palaniappan K, Baskin TI (2003) A combined matching and tensor method to obtain high fidelity velocity fields from image sequences of the non-rigid motion of plant root growth. In MH Hamza, ed, IASTED International Conference on Biomedical Engineering, BioMED 2003, Acta Press, Calgary, Canada (in press)
33. Jiang Z, Staude W (1989) An interferometric method for plant growth measurements. J Exp Bot 40: 1169-1173
34. Kristie DN, Jolliffe PA (1986) High resolution studies of growth oscillations during stem elongation. Can J Bot 64: 2399-2405
35. Liptay A, Barron JL, Jewett T, van Wesenbeeck I (1995) Oscillations in corn seedling growth as measured by optical flow. J Am Soc Hortic Sci 120: 379-385
36. Ma Z, Baskin TI, Brown KM, Lynch JP (2003) Regulation of root elongation under phosphorus stress involves changes in ethylene responsiveness. Plant Physiol 131: 1381-1390
37. Metaxas D, Terzopoulos D (1993) Shape and nonrigid motion estimation through physics-based synthesis. IEEE Trans Pattern Anal Mach Intel 15: 580-591
38. Mullen JL, Ishikawa H, Evans ML (1998) Analysis of changes in relative elemental growth rate patterns in the elongation zone of Arabidopsis roots upon gravistimulation. Planta 206: 598-603
39. Muller B, Stosser M, Tardieu F (1998) Spatial distribution of tissue expansion and cell division rates are related to irradiance and to sugar content in the growing zone of maize roots. Plant Cell Environ 21: 149-158
40. Nagel HH (2000) Image sequence evaluation: 30 years and still going strong. In 15th IEEE International Conference on Pattern Recognition, Vol 1. Computer Vision and Image Analysis. IEEE, Los Alamitos, CA, pp 149-158
41. Odobez JM, Bouthemy P (1995) Robust multiresolution estimation of parametric motion models. J Visual Commun Image Represent 6: 348-365
42. Ronot X, Doisy A, Tracqui P (2000) Quantitative study of dynamic behavior of cell monolayers during in vitro wound healing by optical flow analysis. Cytometry 41: 19-30
43. Sacks MM, Silk WK, Burman P (1997) Effect of water stress on cortical cell division rates within the apical meristem of primary roots of maize. Plant Physiol 114: 519-527
44. Schmundt D, Stitt M, Jähne B, Schurr U (1998) Quantitative analysis of the local rates of growth of dicot leaves at high temporal and spatial resolution, using image sequence analysis. Plant J 16: 505-514
45. Shapiro L, Stockman GC (2001) Computer Vision. Prentice-Hall, Englewood Cliffs, NJ
46. Sharp RE, Hsiao TC, Silk WK (1990) Growth of the maize primary root at low water potentials: II. Role of growth and deposition of hexose and potassium in osmotic adjustment. Plant Physiol 93: 1337-1346
47. Sharp RE, Silk WK, Hsiao TC (1988) Growth of maize primary root at low water potentials: I. Spatial distribution of expansive growth. Plant Physiol 87: 50-57
48. Siegert F, Weijer CJ, Nomura A, Miike H (1994) A gradient method for the quantitative analysis of cell movement and tissue flow and its application to the analysis of multicellular dictyostelium development. J Cell Sci 107: 97-104
49. Silk WK (1992) Steady form from changing cells. Int J Plant Sci 153: S49-S58
50. van der Weele CM (2001) Cell production, expansion, and the role of auxin in the response of the root of Arabidopsis thaliana exposed to water deficit. PhD thesis. University of Missouri, Columbia
51. Vedula S, Baker S, Seitz S, Kanade T (2000) Shape and motion carving in 6D. Proc IEEE Computer Vision Pattern Recognition 2: 592-598
52. Walter A, Spies H, Terjung S, Küsters R, Kirchgeßner N, Schurr U (2002) Spatio-temporal dynamics of expansion growth in roots: automatic quantification of diurnal course and temperature response by digital image sequence processing. J Exp Bot 53: 689-698
53. Zhou L, Kambhamettu C, Goldgof DB, Palaniappan K, Hasler AF (2001) Tracking nonrigid motion and structure from 2D satellite cloud images without correspondences. IEEE Trans Pattern Anal Machine Intel 23: 1330-1336
54. Zhuang X, Palaniappan K, Haralick RM (1999) Highly robust statistical methods based on minimum-error Bayesian classification. In CW Chen, Y-Q Zhang, eds, Visual Information Representation, Communication and Image Processing, Optical Engineering Series 64. Marcel-Dekker, New York, pp 415-430
55. Zoccolan D, Giachetti A, Torre V (2001) The use of optical flow to characterize muscle contraction. J Neurosci Methods 110: 65-80