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Volumn 93, Issue 6, 2017, Pages

Evolution of microbial communities growing with carbon monoxide, hydrogen, and carbon dioxide

Author keywords

Acetobacterium; carbon monoxide (CO); carboxidotroph; CO enrichment; CO partial pressure; Pleomorphomonas

Indexed keywords

ACETIC ACID; ALCOHOL; CARBON DIOXIDE; CARBON MONOXIDE; HYDROGEN;

EID: 85029361733     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1093/femsec/fix076     Document Type: Article
Times cited : (39)

References (47)
  • 1
    • 84887611952 scopus 로고    scopus 로고
    • Enrichment of anaerobic syngas-converting bacteria from thermophilic bioreactor sludge
    • Alves JI, Stams AJM, Plugge CM et al. Enrichment of anaerobic syngas-converting bacteria from thermophilic bioreactor sludge. FEMS Microbiol Ecol 2013;86:590–7.
    • (2013) FEMS Microbiol Ecol , vol.86 , pp. 590-597
    • Alves, JI1    Stams, AJM2    Plugge, CM3
  • 2
    • 33750860866 scopus 로고
    • The technical and economic feasibility of biomass gasification for power generation
    • Bridgwater AV. The technical and economic feasibility of biomass gasification for power generation. Fuel 1995;74: 631–53.
    • (1995) Fuel , vol.74 , pp. 631-653
    • Bridgwater, AV.1
  • 3
    • 0017409091 scopus 로고
    • Growth of Desulfovibrio in lactate or ethanol media low in sulfate in association with H2-utilizing methanogenic bacteria
    • Bryant MP, Campbell LL, Reddy CA et al. Growth of Desulfovibrio in lactate or ethanol media low in sulfate in association with H2-utilizing methanogenic bacteria. Appl Environ Microb 1977;33:1162–9.
    • (1977) Appl Environ Microb , vol.33 , pp. 1162-1169
    • Bryant, MP1    Campbell, LL2    Reddy, CA3
  • 4
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010;7:335–6.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, JG1    Kuczynski, J2    Stombaugh, J3
  • 5
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso JG, Lauber CL, Walters WA et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. Isme J 2012;6:1621–4.
    • (2012) Isme J , vol.6 , pp. 1621-1624
    • Caporaso, JG1    Lauber, CL2    Walters, WA3
  • 6
    • 84872148262 scopus 로고    scopus 로고
    • Commercial biomass syngas fermentation
    • Daniell J, Köpke M, Simpson SD. Commercial biomass syngas fermentation. Energies 2012;5:5372–417.
    • (2012) Energies , vol.5 , pp. 5372-5417
    • Daniell, J1    Köpke, M2    Simpson, SD.3
  • 7
    • 0017650042 scopus 로고
    • Carbon monoxide oxidation by methanogenic bacteria
    • Daniels L, Fuchs G, Thauer RK et al. Carbon monoxide oxidation by methanogenic bacteria. J Bacteriol 1977;132:118–26.
    • (1977) J Bacteriol , vol.132 , pp. 118-126
    • Daniels, L1    Fuchs, G2    Thauer, RK3
  • 8
    • 84866091572 scopus 로고    scopus 로고
    • Role of bicarbonate as a pH buffer and electron sink in microbial dechlorination of chloroethenes
    • Delgado AG, Parameswaran P, Fajardo-Williams D et al. Role of bicarbonate as a pH buffer and electron sink in microbial dechlorination of chloroethenes. Microb Cell Fact 2012;11:128.
    • (2012) Microb Cell Fact , vol.11 , pp. 128
    • Delgado, AG1    Parameswaran, P2    Fajardo-Williams, D3
  • 9
    • 84983042521 scopus 로고    scopus 로고
    • Proteomic analysis of the hydrogen and carbon monoxide metabolism of Methanothermobacter marburgensis
    • Diender M, Pereira R, Wessels HJCT et al. Proteomic analysis of the hydrogen and carbon monoxide metabolism of Methanothermobacter marburgensis. Front Microbiol 2016;7, DOI: 10.3389/fmicb.2016.01049.
    • (2016) Front Microbiol , vol.7
    • Diender, M1    Pereira, R2    Wessels, HJCT3
  • 10
    • 85058083754 scopus 로고    scopus 로고
    • Boca Raton, FL: CRC Press Taylor and Francis Group
    • Dürre P. Handbook on Clostridia. Boca Raton, FL: CRC Press Taylor and Francis Group, 2005.
    • (2005) Handbook on Clostridia
    • Dürre, P.1
  • 11
    • 84990852442 scopus 로고    scopus 로고
    • Archaea and Bacteria acclimate to high total ammonia in a methanogenic reactor treating swine waste
    • Esquivel-Elizondo S, Parameswaran P, Delgado AG et al. Archaea and Bacteria acclimate to high total ammonia in a methanogenic reactor treating swine waste. Archaea 2016;2016:10.
    • (2016) Archaea , vol.2016 , pp. 10
    • Esquivel-Elizondo, S1    Parameswaran, P2    Delgado, AG3
  • 12
    • 84906829581 scopus 로고    scopus 로고
    • The Earth Microbiome project: successes and aspirations
    • Gilbert JA, Jansson JK, Knight R. The Earth Microbiome project: successes and aspirations. BMC Biol 2014;12:69.
    • (2014) BMC Biol , vol.12 , pp. 69
    • Gilbert, JA1    Jansson, JK2    Knight, R.3
  • 13
    • 0025874014 scopus 로고
    • Evidence for production of n-butanol from carbon monoxide by Butyribacterium methylotrophicum
    • Grethlein AJ, Worden RM, Jain MK et al. Evidence for production of n-butanol from carbon monoxide by Butyribacterium methylotrophicum. J Ferment Bioeng 1991;72:58–60.
    • (1991) J Ferment Bioeng , vol.72 , pp. 58-60
    • Grethlein, AJ1    Worden, RM2    Jain, MK3
  • 14
    • 79952129494 scopus 로고    scopus 로고
    • Potential of wastewater-treating anaerobic granules for biomethanation of synthesis gas
    • Guiot SR, Cimpoia R, Carayon G. Potential of wastewater-treating anaerobic granules for biomethanation of synthesis gas. Environ Sci Technol 2011;45:2006–12.
    • (2011) Environ Sci Technol , vol.45 , pp. 2006-2012
    • Guiot, SR1    Cimpoia, R2    Carayon, G.3
  • 15
    • 84874106658 scopus 로고    scopus 로고
    • Performance of a Carboxydothermus hydrogenoformans-immobilizing membrane reactor for syngas upgrading into hydrogen
    • Haddad M, Cimpoia R, Guiot SR. Performance of a Carboxydothermus hydrogenoformans-immobilizing membrane reactor for syngas upgrading into hydrogen. Int J Hydrogen Energ 2013;38:2167–75.
    • (2013) Int J Hydrogen Energ , vol.38 , pp. 2167-2175
    • Haddad, M1    Cimpoia, R2    Guiot, SR.3
  • 16
    • 2342475768 scopus 로고    scopus 로고
    • The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
    • Heidelberg JF, Seshadri R, Haveman SA et al. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nat Biotechnol 2004;22:554–9.
    • (2004) Nat Biotechnol , vol.22 , pp. 554-559
    • Heidelberg, JF1    Seshadri, R2    Haveman, SA3
  • 18
    • 84881667252 scopus 로고    scopus 로고
    • Anaerobic CO2 fixation by the acetogenic bacterium Moorella thermoacetica
    • Hu P, Rismani-Yazdi H, Stephanopoulos G. Anaerobic CO2 fixation by the acetogenic bacterium Moorella thermoacetica. Am Inst Chem Eng 2013;59:3176–83.
    • (2013) Am Inst Chem Eng , vol.59 , pp. 3176-3183
    • Hu, P1    Rismani-Yazdi, H2    Stephanopoulos, G.3
  • 19
    • 72149092243 scopus 로고    scopus 로고
    • Carbon monoxide partial pressure effects on the metabolic process of syngas fermentation
    • Hurst KM, Lewis RS. Carbon monoxide partial pressure effects on the metabolic process of syngas fermentation. Biochem Eng J 2010;48:159–65.
    • (2010) Biochem Eng J , vol.48 , pp. 159-165
    • Hurst, KM1    Lewis, RS.2
  • 21
    • 84925022259 scopus 로고
    • On the fermentation of carbon monoxide by pure cultures of methane bacteria
    • Kluyver AJ, Schnellen CGTP. On the fermentation of carbon monoxide by pure cultures of methane bacteria. Arch Biochem 1947;14:57–70.
    • (1947) Arch Biochem , vol.14 , pp. 57-70
    • Kluyver, AJ1    Schnellen, CGTP.2
  • 22
    • 0028860120 scopus 로고
    • New species of psychrophilic acetogens: Acetobacterium bakii sp. nov., A. paludosum sp. nov., A. fimetarium sp. nov
    • Kotsyurbenko OR, Simankova M V, Nozhevnikova AN et al. New species of psychrophilic acetogens: Acetobacterium bakii sp. nov., A. paludosum sp. nov., A. fimetarium sp. nov. Arch Microbiol 1995;163:29–34.
    • (1995) Arch Microbiol , vol.163 , pp. 29-34
    • Kotsyurbenko, OR1    Simankova, M V2    Nozhevnikova, AN3
  • 23
    • 84876715756 scopus 로고    scopus 로고
    • Using QIIME to analyze 16S rRNA gene sequences from microbial communities
    • Kuczynski J, Stombaugh J, Walters WA et al. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr Protoc Bioinformatic 2011;10:1–28.
    • (2011) Curr Protoc Bioinformatic , vol.10 , pp. 1-28
    • Kuczynski, J1    Stombaugh, J2    Walters, WA3
  • 24
    • 27644466740 scopus 로고    scopus 로고
    • Enrichment, cultivation, and detection of reductively dechlorinating bacteria
    • Loffler F, Sanford R, Ritalahti K. Enrichment, cultivation, and detection of reductively dechlorinating bacteria. Methods Enzymol 2005;397:77–111.
    • (2005) Methods Enzymol , vol.397 , pp. 77-111
    • Loffler, F1    Sanford, R2    Ritalahti, K.3
  • 25
    • 0021154722 scopus 로고
    • Peptostreptococcus productus strain that grows rapidly with CO as the energy source
    • Lorowitz WH, Bryant MP. Peptostreptococcus productus strain that grows rapidly with CO as the energy source. Appl Environ Micriob 1984;47:961–4.
    • (1984) Appl Environ Micriob , vol.47 , pp. 961-964
    • Lorowitz, WH1    Bryant, MP.2
  • 26
    • 84884226344 scopus 로고    scopus 로고
    • Anaerobic digestion for simultaneous sewage sludge treatment and CO biomethanation: process performance and microbial ecology
    • Luo G, Wang W, Angelidaki I. Anaerobic digestion for simultaneous sewage sludge treatment and CO biomethanation: process performance and microbial ecology. Environ Sci Technol 2013;47:10685–93.
    • (2013) Environ Sci Technol , vol.47 , pp. 10685-10693
    • Luo, G1    Wang, W2    Angelidaki, I.3
  • 27
    • 0020072509 scopus 로고
    • Carbon monoxide metabolism of the methylotrophic acidogen Butyribacterium methylotrophicum
    • Lynd L, Kerby R, Zeikus JG. Carbon monoxide metabolism of the methylotrophic acidogen Butyribacterium methylotrophicum. J Bacteriol 1982;149:255–63.
    • (1982) J Bacteriol , vol.149 , pp. 255-263
    • Lynd, L1    Kerby, R2    Zeikus, JG.3
  • 28
    • 84878637526 scopus 로고    scopus 로고
    • Production of fuels and chemicals from waste by microbiomes
    • Marshall CW, LaBelle EV, May HD. Production of fuels and chemicals from waste by microbiomes. Curr Opin Biotechnol 2013;24:391–7.
    • (2013) Curr Opin Biotechnol , vol.24 , pp. 391-397
    • Marshall, CW1    LaBelle, EV2    May, HD.3
  • 29
    • 84857011001 scopus 로고    scopus 로고
    • PANDAseq: paired-end assembler for illumina sequences
    • Masella AP, Bartram AK, Truszkowski JM et al. PANDAseq: paired-end assembler for illumina sequences. BMC Bioinformatics 2012;13, DOI: 10.1186/1471-2105-13-31.
    • (2012) BMC Bioinformatics , vol.13
    • Masella, AP1    Bartram, AK2    Truszkowski, JM3
  • 30
    • 84904563600 scopus 로고    scopus 로고
    • Combining microbial cultures for efficient production of electricity from butyrate in a microbial electrochemical cell
    • Miceli JF, Garcia-Peña I, Parameswaran P et al. Combining microbial cultures for efficient production of electricity from butyrate in a microbial electrochemical cell. Bioresource Technol 2014;169:169–74.
    • (2014) Bioresource Technol , vol.169 , pp. 169-174
    • Miceli, JF1    Garcia-Peña, I2    Parameswaran, P3
  • 31
    • 84961869700 scopus 로고    scopus 로고
    • Biological carbon monoxide conversion to acetate production by mixed culture
    • Nam CW, Jung KA, Park JM. Biological carbon monoxide conversion to acetate production by mixed culture. Bioresour Technol 2016;211:478–85.
    • (2016) Bioresour Technol , vol.211 , pp. 478-485
    • Nam, CW1    Jung, KA2    Park, JM.3
  • 32
    • 84988848254 scopus 로고    scopus 로고
    • Biomethanation of syngas using anaerobic sludge: shift in the catabolic routes with the CO partial pressure increase
    • Navarro SS, Cimpoia R, Bruant G et al. Biomethanation of syngas using anaerobic sludge: shift in the catabolic routes with the CO partial pressure increase. Front Microbiol 2016;7: 1–13.
    • (2016) Front Microbiol , vol.7 , pp. 1-13
    • Navarro, SS1    Cimpoia, R2    Bruant, G3
  • 33
    • 0021252308 scopus 로고
    • Association of hydrogen metabolism with unitrophic or mixotrophic growth of Methanosarcina barkeri on carbon monoxide
    • O’Brien JM, Wolkin RH, Moench TT et al. Association of hydrogen metabolism with unitrophic or mixotrophic growth of Methanosarcina barkeri on carbon monoxide. J Bacteriol 1984;158:373–5.
    • (1984) J Bacteriol , vol.158 , pp. 373-375
    • O’Brien, JM1    Wolkin, RH2    Moench, TT3
  • 34
    • 49749116772 scopus 로고    scopus 로고
    • Carbon monoxide-dependent energy metabolism in anaerobic bacteria and archaea
    • Oelgeschläger E, Rother M. Carbon monoxide-dependent energy metabolism in anaerobic bacteria and archaea. Arch Microbiol 2008;190:257–69.
    • (2008) Arch Microbiol , vol.190 , pp. 257-269
    • Oelgeschläger, E1    Rother, M.2
  • 35
    • 65549159078 scopus 로고    scopus 로고
    • Syntrophic interactions among anode respiring bacteria (ARB) and non-ARB in a biofilm anode: electron balances
    • Parameswaran P, Torres CI, Lee H-S et al. Syntrophic interactions among anode respiring bacteria (ARB) and non-ARB in a biofilm anode: electron balances. Biotechnol Bioeng 2009;103:513–23.
    • (2009) Biotechnol Bioeng , vol.103 , pp. 513-523
    • Parameswaran, P1    Torres, CI2    Lee, H-S3
  • 37
    • 10044290566 scopus 로고    scopus 로고
    • Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: an unusual way of life for a methanogenic archaeon
    • Rother M, Metcalf WW. Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: an unusual way of life for a methanogenic archaeon. P Natl Acad Sci USA 2004;101: 16929–34.
    • (2004) P Natl Acad Sci USA , vol.101 , pp. 16929-16934
    • Rother, M1    Metcalf, WW.2
  • 38
    • 0023388145 scopus 로고
    • Carbon monoxide-dependent chemolithotrophic growth of Clostridium thermoautotrophicum
    • Savage MD, Wu ZG, Daniel SL et al. Carbon monoxide-dependent chemolithotrophic growth of Clostridium thermoautotrophicum. Appl Environ Microb 1987;53:1902–6.
    • (1987) Appl Environ Microb , vol.53 , pp. 1902-1906
    • Savage, MD1    Wu, ZG2    Daniel, SL3
  • 39
    • 0020024364 scopus 로고
    • Growth of Eubacterium limosum with carbon monoxide as the energy source
    • Sharak Genthner BR, Bryant MP. Growth of Eubacterium limosum with carbon monoxide as the energy source. Appl Environ Microb 1982;43:70–4.
    • (1982) Appl Environ Microb , vol.43 , pp. 70-74
    • Sharak Genthner, BR1    Bryant, MP.2
  • 40
    • 0023156592 scopus 로고
    • Additional characteristics of one-carbon-compound utilization by Eubacterium limosum and Acetobacterium woodii
    • Sharak Genthner BR, Bryant MP. Additional characteristics of one-carbon-compound utilization by Eubacterium limosum and Acetobacterium woodii. Appl Environ Microb 1987;53: 471–6.
    • (1987) Appl Environ Microb , vol.53 , pp. 471-476
    • Sharak Genthner, BR1    Bryant, MP.2
  • 41
    • 0037447856 scopus 로고    scopus 로고
    • Carbon monoxide conversion by anaerobic bioreactor sludges
    • Sipma J, Lens PNL, Stams AJM et al. Carbon monoxide conversion by anaerobic bioreactor sludges. FEMS Microbiol Ecol 2003;44:271–7.
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 271-277
    • Sipma, J1    Lens, PNL2    Stams, AJM3
  • 42
    • 33947396828 scopus 로고    scopus 로고
    • Novel facultative anaerobic acidotolerant Telmatospirillum siberiense gen. nov. sp. nov. isolated from mesotrophic fen
    • Sizova MV, Panikov NS, Spiridonova EM et al. Novel facultative anaerobic acidotolerant Telmatospirillum siberiense gen. nov. sp. nov. isolated from mesotrophic fen. Syst Appl Microbiol 2007;30:213–20.
    • (2007) Syst Appl Microbiol , vol.30 , pp. 213-220
    • Sizova, MV1    Panikov, NS2    Spiridonova, EM3
  • 43
    • 0036867678 scopus 로고    scopus 로고
    • Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring
    • Sokolova TG, Kostrikina NA, Chernyh NA et al. Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring. Int J Syst Evol Micr 2002;52:1961–7.
    • (2002) Int J Syst Evol Micr , vol.52 , pp. 1961-1967
    • Sokolova, TG1    Kostrikina, NA2    Chernyh, NA3
  • 44
    • 0026058830 scopus 로고
    • Isolation and characterization of a methyl chloride utilizing, strictly anaerobic bacterium
    • Traunecker J, Preu BA, Diekert G. Isolation and characterization of a methyl chloride utilizing, strictly anaerobic bacterium. Arch Microbiol 1991;156:416–21.
    • (1991) Arch Microbiol , vol.156 , pp. 416-421
    • Traunecker, J1    Preu, BA2    Diekert, G.3
  • 45
    • 0024732165 scopus 로고
    • Study of gaseous substrate fermenations: carbon monoxide conversion to acetate. 2. Continuous culture
    • Vega JL, Antorrena GM, Clausen EC et al. Study of gaseous substrate fermenations: carbon monoxide conversion to acetate. 2. Continuous culture. Biotechnol Bioeng 1989a;34: 785–93.
    • (1989) Biotechnol Bioeng , vol.34 , pp. 785-793
    • Vega, JL1    Antorrena, GM2    Clausen, EC3
  • 46
    • 0344854018 scopus 로고
    • The biological production of ethanol from synthesis gas
    • Vega JL, Prieto S, Elmore BB et al. The biological production of ethanol from synthesis gas. Appl Biochem Biotech 1989b;20–21:781–97.
    • (1989) Appl Biochem Biotech , Issue.20–21 , pp. 781-797
    • Vega, JL1    Prieto, S2    Elmore, BB3


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