-
1
-
-
84971254762
-
Genomic insights into the emergence and spread of international clones of healthcare-, community- and livestock-associated methicillin-resistant Staphylococcus aureus: Blurring of the traditional definitions
-
Bal AM, Coombs GW, Holden MT, Lindsay JA, Nimmo GR, Tattevin P, Skov RL. 2016. Genomic insights into the emergence and spread of international clones of healthcare-, community- and livestock-associated methicillin-resistant Staphylococcus aureus: blurring of the traditional definitions. J Glob Antimicrob Resist 6:95–101. https://doi.org/10.1016/j.jgar.2016.04.004.
-
(2016)
J Glob Antimicrob Resist
, vol.6
, pp. 95-101
-
-
Bal, A.M.1
Coombs, G.W.2
Holden, M.T.3
Lindsay, J.A.4
Nimmo, G.R.5
Tattevin, P.6
Skov, R.L.7
-
2
-
-
84861216173
-
Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections
-
Pozzi C, Waters EM, Rudkin JK, Schaeffer CR, Lohan AJ, Tong P, Loftus BJ, Pier GB, Fey PD, Massey RC, O’Gara JP. 2012. Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections. PLoS Pathog 8:e1002626. https://doi.org/10.1371/journal.ppat.1002626.
-
(2012)
Plos Pathog
, vol.8
, pp. e1002626
-
-
Pozzi, C.1
Waters, E.M.2
Rudkin, J.K.3
Schaeffer, C.R.4
Lohan, A.J.5
Tong, P.6
Loftus, B.J.7
Pier, G.B.8
Fey, P.D.9
Massey, R.C.10
O’Gara, J.P.11
-
3
-
-
0032870940
-
The biological cost of antibiotic resistance
-
Andersson DI, Levin BR. 1999. The biological cost of antibiotic resistance. Curr Opin Microbiol 2:489–493. https://doi.org/10.1016/S1369-5274(99)00005-3.
-
(1999)
Curr Opin Microbiol
, vol.2
, pp. 489-493
-
-
Andersson, D.I.1
Levin, B.R.2
-
4
-
-
33745615117
-
The competitive cost of antibiotic resistance in Mycobacterium tuberculosis
-
Gagneux S, Long CD, Small PM, Van T, Schoolnik GK, Bohannan BJ. 2006. The competitive cost of antibiotic resistance in Mycobacterium tuberculosis. Science 312:1944 –1946. https://doi.org/10.1126/science.1124410.
-
(2006)
Science
, vol.312
, pp. 1944-1946
-
-
Gagneux, S.1
Long, C.D.2
Small, P.M.3
Van, T.4
Schoolnik, G.K.5
Bohannan, B.J.6
-
5
-
-
0030978424
-
Suppression of beta-lactam antibiotic resistance in a methicillin-resistant Staphylococcus aureus through syner-gic action of early cell wall inhibitors and some other antibiotics
-
Sieradzki K, Tomasz A. 1997. Suppression of beta-lactam antibiotic resistance in a methicillin-resistant Staphylococcus aureus through syner-gic action of early cell wall inhibitors and some other antibiotics. J Antimicrob Chemother 39(Suppl A):47–51. https://doi.org/10.1093/jac/39.suppl_1.47.
-
(1997)
J Antimicrob Chemother
, vol.39
, pp. 47-51
-
-
Sieradzki, K.1
Tomasz, A.2
-
6
-
-
84883181906
-
Mutation in the c-di-AMP cyclase dacA affects fitness and resistance of methicillin resistant Staphylococcus aureus
-
Dengler V, McCallum N, Kiefer P, Christen P, Patrignani A, Vorholt JA, Berger-Bachi B, Senn MM. 2013. Mutation in the c-di-AMP cyclase dacA affects fitness and resistance of methicillin resistant Staphylococcus aureus. PLoS One 8:e73512. https://doi.org/10.1371/journal.pone.0073512.
-
(2013)
Plos One
, vol.8
, pp. e73512
-
-
Dengler, V.1
McCallum, N.2
Kiefer, P.3
Christen, P.4
Patrignani, A.5
Vorholt, J.A.6
Berger-Bachi, B.7
Senn, M.M.8
-
7
-
-
84899784539
-
Novel determinants of antibiotic resistance: Identification of mutated loci in highly methicillin-resistant subpopulations of methicillin-resistant Staphylococcus aureus
-
Dordel J, Kim C, Chung M, Pardos de la Gandara M, Holden MT, Parkhill J, de Lencastre H, Bentley SD, Tomasz A. 2014. Novel determinants of antibiotic resistance: identification of mutated loci in highly methicillin-resistant subpopulations of methicillin-resistant Staphylococcus aureus. mBio 5:e01000. https://doi.org/10.1128/mBio.01000-13.
-
(2014)
Mbio
, vol.5
, pp. e01000
-
-
Dordel, J.1
Kim, C.2
Chung, M.3
Pardos De La Gandara, M.4
Holden, M.T.5
Parkhill, J.6
De Lencastre, H.7
Bentley, S.D.8
Tomasz, A.9
-
8
-
-
0030934763
-
Transcription analysis of the Staphylococcus aureus gene encoding penicillin-binding protein 4
-
Domanski TL, de Jonge BL, Bayles KW. 1997. Transcription analysis of the Staphylococcus aureus gene encoding penicillin-binding protein 4. J Bacteriol 179:2651–2657. https://doi.org/10.1128/jb.179.8.2651-2657.1997.
-
(1997)
J Bacteriol
, vol.179
, pp. 2651-2657
-
-
Domanski, T.L.1
De Jonge, B.L.2
Bayles, K.W.3
-
9
-
-
77954079519
-
Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways
-
Mulhbacher J, Brouillette E, Allard M, Fortier LC, Malouin F, Lafontaine DA. 2010. Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways. PLoS Pathog 6:e1000865. https://doi.org/10.1371/journal.ppat.1000865.
-
(2010)
Plos Pathog
, vol.6
, pp. e1000865
-
-
Mulhbacher, J.1
Brouillette, E.2
Allard, M.3
Fortier, L.C.4
Malouin, F.5
Lafontaine, D.A.6
-
10
-
-
84986538598
-
The cell wall polymer lipoteichoic acid becomes nonessential in Staphylococcus aureus cells lacking the ClpX chaperone
-
Baek KT, Bowman L, Millership C, Dupont Sogaard M, Kaever V, Siljamaki P, Savijoki K, Varmanen P, Nyman TA, Grundling A, Frees D. 2016. The cell wall polymer lipoteichoic acid becomes nonessential in Staphylococcus aureus cells lacking the ClpX chaperone. mBio 7:e01228-16. https://doi.org/10.1128/mBio.01228-16.
-
(2016)
Mbio
, vol.7
, pp. e01228-e01316
-
-
Baek, K.T.1
Bowman, L.2
Millership, C.3
Dupont Sogaard, M.4
Kaever, V.5
Siljamaki, P.6
Savijoki, K.7
Varmanen, P.8
Nyman, T.A.9
Grundling, A.10
Frees, D.11
-
11
-
-
84992695890
-
Evaluation of Staphylococcus aureus lipoproteins: Role in nutritional acquisition and pathogenicity
-
Shahmirzadi SV, Nguyen MT, Gotz F. 2016. Evaluation of Staphylococcus aureus lipoproteins: role in nutritional acquisition and pathogenicity. Front Microbiol 7:1404. https://doi.org/10.3389/fmicb.2016.01404.
-
(2016)
Front Microbiol
, vol.7
, pp. 1404
-
-
Shahmirzadi, S.V.1
Nguyen, M.T.2
Gotz, F.3
-
12
-
-
84921344431
-
Staphylococcus aureus small colony variants (SCVs): A road map for the metabolic pathways involved in persistent infections
-
Proctor RA, Kriegeskorte A, Kahl BC, Becker K, Loffler B, Peters G. 2014. Staphylococcus aureus small colony variants (SCVs): a road map for the metabolic pathways involved in persistent infections. Front Cell Infect Microbiol 4:99. https://doi.org/10.3389/fcimb.2014.00099.
-
(2014)
Front Cell Infect Microbiol
, vol.4
, pp. 99
-
-
Proctor, R.A.1
Kriegeskorte, A.2
Kahl, B.C.3
Becker, K.4
Loffler, B.5
Peters, G.6
-
13
-
-
84905366993
-
Beta-lactam resistance in methicillin-resistant Staphylococcus aureus USA300 is increased by inactivation of the ClpXP protease
-
Baek KT, Grundling A, Mogensen RG, Thogersen L, Petersen A, Paulander W, Frees D. 2014. Beta-lactam resistance in methicillin-resistant Staphylococcus aureus USA300 is increased by inactivation of the ClpXP protease. Antimicrob Agents Chemother 58:4593– 4603. https://doi.org/10.1128/AAC.02802-14.
-
(2014)
Antimicrob Agents Chemother
, vol.58
, pp. 4593-4603
-
-
Baek, K.T.1
Grundling, A.2
Mogensen, R.G.3
Thogersen, L.4
Petersen, A.5
Paulander, W.6
Frees, D.7
-
14
-
-
80053436395
-
C-di-AMP is a new second messenger in Staphylococcus aureus with a role in controlling cell size and envelope stress
-
Corrigan RM, Abbott JC, Burhenne H, Kaever V, Grundling A. 2011. c-di-AMP is a new second messenger in Staphylococcus aureus with a role in controlling cell size and envelope stress. PLoS Pathog 7:e1002217. https://doi.org/10.1371/journal.ppat.1002217.
-
(2011)
Plos Pathog
, vol.7
, pp. e1002217
-
-
Corrigan, R.M.1
Abbott, J.C.2
Burhenne, H.3
Kaever, V.4
Grundling, A.5
-
15
-
-
85117457737
-
Large tandem chromosome expansions facilitate niche adaptation during persistent infection with drug-resistant Staphylococcus aureus
-
Gao W, Monk IR, Tobias NJ, Gladman SL, Seemann T, Stinear TP, Howden BP. 2015. Large tandem chromosome expansions facilitate niche adaptation during persistent infection with drug-resistant Staphylococcus aureus. Microb Genom 1:e000026. https://doi.org/10.1099/mgen.0.000026.
-
(2015)
Microb Genom
, vol.1
, pp. e000026
-
-
Gao, W.1
Monk, I.R.2
Tobias, N.J.3
Gladman, S.L.4
Seemann, T.5
Stinear, T.P.6
Howden, B.P.7
-
16
-
-
84984924888
-
Competing for iron: Duplication and amplification of the isd locus in Staphylococcus lugdunensis HKU09-01 provides a competitive advantage to overcome nutritional limitation
-
Heilbronner S, Monk IR, Brozyna JR, Heinrichs DE, Skaar EP, Peschel A, Foster TJ. 2016. Competing for iron: duplication and amplification of the isd locus in Staphylococcus lugdunensis HKU09-01 provides a competitive advantage to overcome nutritional limitation. PLoS Genet 12:e1006246. https://doi.org/10.1371/journal.pgen.1006246.
-
(2016)
Plos Genet
, vol.12
, pp. e1006246
-
-
Heilbronner, S.1
Monk, I.R.2
Brozyna, J.R.3
Heinrichs, D.E.4
Skaar, E.P.5
Peschel, A.6
Foster, T.J.7
-
17
-
-
43949146900
-
The arginine catabolic mobile element and staphylococcal chromosomal cassette mec linkage: Convergence of virulence and resistance in the USA300 clone of methicillin-resistant Staphylococcus aureus
-
Diep BA, Stone GG, Basuino L, Graber CJ, Miller A, des Etages SA, Jones A, Palazzolo-Ballance AM, Perdreau-Remington F, Sensabaugh GF, DeLeo FR, Chambers HF. 2008. The arginine catabolic mobile element and staphylococcal chromosomal cassette mec linkage: convergence of virulence and resistance in the USA300 clone of methicillin-resistant Staphylococcus aureus. J Infect Dis 197:1523–1530. https://doi.org/10.1086/587907.
-
(2008)
J Infect Dis
, vol.197
, pp. 1523-1530
-
-
Diep, B.A.1
Stone, G.G.2
Basuino, L.3
Graber, C.J.4
Miller, A.5
Des Etages, S.A.6
Jones, A.7
Palazzolo-Ballance, A.M.8
Perdreau-Remington, F.9
Sensabaugh, G.F.10
DeLeo, F.R.11
Chambers, H.F.12
-
18
-
-
70349330326
-
Differential expression of ccrA in methicillin-resistant Staphylococcus aureus strains carrying staphylococcal cassette chromosome mec type II and IVa elements
-
Higgins PG, Rosato AE, Seifert H, Archer GL, Wisplinghoff H. 2009. Differential expression of ccrA in methicillin-resistant Staphylococcus aureus strains carrying staphylococcal cassette chromosome mec type II and IVa elements. Antimicrob Agents Chemother 53:4556 – 4558. https://doi.org/10.1128/AAC.00395-09.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 4556-4558
-
-
Higgins, P.G.1
Rosato, A.E.2
Seifert, H.3
Archer, G.L.4
Wisplinghoff, H.5
-
19
-
-
84984600782
-
Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative
-
Mir-Sanchis I, Roman CA, Misiura A, Pigli YZ, Boyle-Vavra S, Rice PA. 2016. Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative. Nat Struct Mol Biol 23:891– 898. https://doi.org/10.1038/nsmb.3286.
-
(2016)
Nat Struct Mol Biol
, vol.23
, pp. 891-898
-
-
Mir-Sanchis, I.1
Roman, C.A.2
Misiura, A.3
Pigli, Y.Z.4
Boyle-Vavra, S.5
Rice, P.A.6
-
20
-
-
0027420692
-
A sister-strand exchange mechanism for recA-independent deletion of repeated DNA sequences in Escherichia coli
-
Lovett ST, Drapkin PT, Sutera VA, Jr, Gluckman-Peskind TJ. 1993. A sister-strand exchange mechanism for recA-independent deletion of repeated DNA sequences in Escherichia coli. Genetics 135:631–642.
-
(1993)
Genetics
, vol.135
, pp. 631-642
-
-
Lovett, S.T.1
Drapkin, P.T.2
Sutera, V.A.3
Gluckman-Peskind, T.J.4
-
21
-
-
67651204792
-
Bacterial gene amplification: Implications for the evolution of antibiotic resistance
-
Sandegren L, Andersson DI. 2009. Bacterial gene amplification: implications for the evolution of antibiotic resistance. Nat Rev Microbiol 7:578–588. https://doi.org/10.1038/nrmicro2174.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 578-588
-
-
Sandegren, L.1
Andersson, D.I.2
-
22
-
-
42049122122
-
Spontaneous deletion of the methicillin resistance determinant, mecA, partially compensates for the fitness cost associated with high-level vancomycin resistance in Staphylococcus aureus
-
Noto MJ, Fox PM, Archer GL. 2008. Spontaneous deletion of the methicillin resistance determinant, mecA, partially compensates for the fitness cost associated with high-level vancomycin resistance in Staphylococcus aureus. Antimicrob Agents Chemother 52:1221–1229. https://doi.org/10.1128/AAC.01164-07.
-
(2008)
Antimicrob Agents Chemother
, vol.52
, pp. 1221-1229
-
-
Noto, M.J.1
Fox, P.M.2
Archer, G.L.3
-
23
-
-
85007504277
-
CAMERA2 - Combination antibiotic therapy for methicillin-resistant Staphylococcus aureus infection: Study protocol for a randomised controlled trial
-
Tong SY, Nelson J, Paterson DL, Fowler VG, Jr, Howden BP, Cheng AC, Chatfield M, Lipman J, Van Hal S, O’Sullivan M, Robinson JO, Yahav D, Lye D, Davis JS, CAMERA2 Study Group, Australasian Society for Infectious Diseases Clinical Research Network. 2016. CAMERA2 - combination antibiotic therapy for methicillin-resistant Staphylococcus aureus infection: study protocol for a randomised controlled trial. Trials 17:170. https://doi.org/10.1186/s13063-016-1295-3.
-
(2016)
Trials
, vol.17
, pp. 170
-
-
Tong, S.Y.1
Nelson, J.2
Paterson, D.L.3
Fowler, V.G.4
Howden, B.P.5
Cheng, A.C.6
Chatfield, M.7
Lipman, J.8
Van Hal, S.9
O’Sullivan, M.10
Robinson, J.O.11
Yahav, D.12
Lye, D.13
Davis, J.S.14
-
24
-
-
84960120370
-
Combination of vancomycin and beta-lactam therapy for methicillin-resistant Staphylococcus aureus bacteremia: A pilot multicenter randomized controlled trial
-
Australasian Society for Infectious Diseases Clinical Research Network
-
Davis JS, Sud A, O’Sullivan MV, Robinson JO, Ferguson PE, Foo H, van Hal SJ, Ralph AP, Howden BP, Binks PM, Kirby A, Tong SY, Combination Antibiotics for MEthicillin Resistant Staphylococcus aureus (CAMERA) Study Group, Australasian Society for Infectious Diseases Clinical Research Network. 2016. Combination of vancomycin and beta-lactam therapy for methicillin-resistant Staphylococcus aureus bacteremia: a pilot multicenter randomized controlled trial. Clin Infect Dis 62:173–180. https://doi.org/10.1093/cid/civ808.
-
(2016)
Clin Infect Dis
, vol.62
, pp. 173-180
-
-
Davis, J.S.1
Sud, A.2
O’Sullivan, M.V.3
Robinson, J.O.4
Ferguson, P.E.5
Foo, H.6
Van Hal, S.J.7
Ralph, A.P.8
Howden, B.P.9
Binks, P.M.10
Kirby, A.11
Tong, S.Y.12
-
26
-
-
0036330857
-
IcaR encodes a transcriptional repressor involved in environmental regulation of ica operon expression and biofilm formation in Staphylococcus epidermidis
-
Conlon KM, Humphreys H, O’Gara JP. 2002. icaR encodes a transcriptional repressor involved in environmental regulation of ica operon expression and biofilm formation in Staphylococcus epidermidis. J Bacteriol 184: 4400–4408. https://doi.org/10.1128/JB.184.16.4400-4408.2002.
-
(2002)
J Bacteriol
, vol.184
, pp. 4400-4408
-
-
Conlon, K.M.1
Humphreys, H.2
O’Gara, J.P.3
-
27
-
-
84964867279
-
The major autolysin is redundant for Staphylococcus aureus USA300 LAC JE2 virulence in a murine device-related infection model
-
McCarthy H, Waters EM, Bose JL, Foster S, Bayles KW, O’Neill E, Fey PD, O’Gara JP. 2016. The major autolysin is redundant for Staphylococcus aureus USA300 LAC JE2 virulence in a murine device-related infection model. FEMS Microbiol Lett 363:fnw087. https://doi.org/10.1093/femsle/fnw087.
-
(2016)
FEMS Microbiol Lett
, vol.363
, pp. fnw087
-
-
McCarthy, H.1
Waters, E.M.2
Bose, J.L.3
Foster, S.4
Bayles, K.W.5
O’Neill, E.6
Fey, P.D.7
O’Gara, J.P.8
-
28
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. https://doi.org/10.1093/bioinformatics/btu170.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
29
-
-
84881309354
-
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
-
Nikolenko SI, Korobeynikov AI, Alekseyev MA. 2013. BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genomics 14(Suppl 1):S7. https://doi.org/10.1186/1471-2164-14-S1-S7.
-
(2013)
BMC Genomics
, vol.14
, pp. S7
-
-
Nikolenko, S.I.1
Korobeynikov, A.I.2
Alekseyev, M.A.3
-
30
-
-
78649358717
-
Quake: Quality-aware detection and correction of sequencing errors
-
Kelley DR, Schatz MC, Salzberg SL. 2010. Quake: quality-aware detection and correction of sequencing errors. Genome Biol 11:R116. https://doi.org/10.1186/gb-2010-11-11-r116.
-
(2010)
Genome Biol
, vol.11
, pp. R116
-
-
Kelley, D.R.1
Schatz, M.C.2
Salzberg, S.L.3
-
31
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26:841–842. https://doi.org/10.1093/bioinformatics/btq033.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
32
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477. https://doi.org/10.1089/cmb.2012.0021.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
33
-
-
84876266928
-
QUAST: Quality assessment tool for genome assemblies
-
Gurevich A, Saveliev V, Vyahhi N, Tesler G. 2013. QUAST: quality assessment tool for genome assemblies. Bioinformatics 29:1072–1075. https://doi.org/10.1093/bioinformatics/btt086.
-
(2013)
Bioinformatics
, vol.29
, pp. 1072-1075
-
-
Gurevich, A.1
Saveliev, V.2
Vyahhi, N.3
Tesler, G.4
-
34
-
-
84862591603
-
Toward almost closed genomes with Gap-Filler
-
Boetzer M, Pirovano W. 2012. Toward almost closed genomes with Gap-Filler. Genome Biol 13:R56. https://doi.org/10.1186/gb-2012-13-6-r56.
-
(2012)
Genome Biol
, vol.13
, pp. R56
-
-
Boetzer, M.1
Pirovano, W.2
-
35
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078–2079. https://doi.org/10.1093/bioinformatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
36
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye K, Schulz MH, Long Q, Apweiler R, Ning Z. 2009. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25: 2865–2871. https://doi.org/10.1093/bioinformatics/btp394.
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.5
-
37
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
-
Cingolani P, Platts A, Wang LL, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. 2012. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) 6:80–92. https://doi.org/10.4161/fly.19695.
-
(2012)
Fly (austin
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang, L.L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
Land, S.J.7
Lu, X.8
Ruden, D.M.9
-
38
-
-
84991528128
-
A single chromosome assembly of Bacteroides fragilis strain BE1 from illumina and MinION nanopore sequencing data
-
Risse J, Thomson M, Patrick S, Blakely G, Koutsovoulos G, Blaxter M, Watson M. 2015. A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data. Giga-science 4:60. https://doi.org/10.1186/s13742-015-0101-6.
-
(2015)
Giga-science
, vol.4
, pp. 60
-
-
Risse, J.1
Thomson, M.2
Patrick, S.3
Blakely, G.4
Koutsovoulos, G.5
Blaxter, M.6
Watson, M.7
-
39
-
-
84922368174
-
PoRe: An R package for the visualization and analysis of nanopore sequencing data
-
Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, Blaxter M. 2015. poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinformatics 31:114–115. https://doi.org/10.1093/bioinformatics/btu590.
-
(2015)
Bioinformatics
, vol.31
, pp. 114-115
-
-
Watson, M.1
Thomson, M.2
Risse, J.3
Talbot, R.4
Santoyo-Lopez, J.5
Gharbi, K.6
Blaxter, M.7
-
40
-
-
84902707563
-
SSPACE-LongRead: Scaffolding bacterial draft genomes using long read sequence information
-
Boetzer M, Pirovano W. 2014. SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information. BMC Bioinformatics 15:211. https://doi.org/10.1186/1471-2105-15-211.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 211
-
-
Boetzer, M.1
Pirovano, W.2
-
41
-
-
84874638650
-
A genetic resource for rapid and comprehensive phenotype screening of nonessential Staphylococcus aureus genes
-
Fey PD, Endres JL, Yajjala VK, Widhelm TJ, Boissy RJ, Bose JL, Bayles KW. 2013. A genetic resource for rapid and comprehensive phenotype screening of nonessential Staphylococcus aureus genes. mBio 4:e00537 -12. https://doi.org/10.1128/mBio.00537-12.
-
(2013)
Mbio
, vol.4
, pp. e00537-e00612
-
-
Fey, P.D.1
Endres, J.L.2
Yajjala, V.K.3
Widhelm, T.J.4
Boissy, R.J.5
Bose, J.L.6
Bayles, K.W.7
-
42
-
-
33644659999
-
Complete genome sequence of USA300, an epidemic clone of community-acquired methicillin-resistant Staphylococcus aureus
-
Diep BA, Gill SR, Chang RF, Phan TH, Chen JH, Davidson MG, Lin F, Lin J, Carleton HA, Mongodin EF, Sensabaugh GF, Perdreau-Remington F. 2006. Complete genome sequence of USA300, an epidemic clone of community-acquired methicillin-resistant Staphylococcus aureus. Lancet 367:731–739.
-
(2006)
Lancet
, vol.367
, pp. 731-739
-
-
Diep, B.A.1
Gill, S.R.2
Chang, R.F.3
Phan, T.H.4
Chen, J.H.5
Davidson, M.G.6
Lin, F.7
Lin, J.8
Carleton, H.A.9
Mongodin, E.F.10
Sensabaugh, G.F.11
Perdreau-Remington, F.12
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