메뉴 건너뛰기




Volumn 27, Issue 11, 2011, Pages 2683-2696

Phylogenetic diversity of isolates belonging to genera Geobacillus and Aeribacillus isolated from different geothermal regions of Turkey

Author keywords

16S rRNA gene; Aeribacillus; ARDRA; Geobacillus; Isolation; Thermophilic

Indexed keywords

BACILLI; RNA;

EID: 85027928009     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-011-0742-2     Document Type: Article
Times cited : (19)

References (38)
  • 1
    • 0025919484 scopus 로고
    • Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences
    • doi:10.1111/j.1472-765X.1991.tb00608.x
    • Ash C, Farrow JAE, Wallbanks S, Collins MD (1991) Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13: 202-206. doi: 10. 1111/j. 1472-765X. 1991. tb00608. x.
    • (1991) Lett Appl Microbiol , vol.13 , pp. 202-206
    • Ash, C.1    Farrow, J.A.E.2    Wallbanks, S.3    Collins, M.D.4
  • 2
    • 9944257028 scopus 로고    scopus 로고
    • Geobacillus debilis sp. nov., a novel obligately thermophilic bacterium isolated from a cool soil environment, and reassignment of Bacillus pallidus to Geobacillus pallidus comb. nov
    • doi:10.1099/ijs.0.63231-0
    • Banat IM, Marchant R, Rahman TJ (2004) Geobacillus debilis sp. nov., a novel obligately thermophilic bacterium isolated from a cool soil environment, and reassignment of Bacillus pallidus to Geobacillus pallidus comb. nov. Int J Syst Evol Microbiol 54: 2197-2201. doi: 10. 1099/ijs. 0. 63231-0.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2197-2201
    • Banat, I.M.1    Marchant, R.2    Rahman, T.J.3
  • 3
    • 0035720329 scopus 로고    scopus 로고
    • Identification of thermohilic and marine bacilli from shallow thermal vents by restriction analysis of their amplified 16S rRNA
    • doi:10.1046/j.1365-2672.2001.01410.x
    • Caccamo D, Maugeri TL, Guglisndolo C (2001) Identification of thermohilic and marine bacilli from shallow thermal vents by restriction analysis of their amplified 16S rRNA. J Appl Microbiol 91: 520-524. doi: 10. 1046/j. 1365-2672. 2001. 01410. x.
    • (2001) J Appl Microbiol , vol.91 , pp. 520-524
    • Caccamo, D.1    Maugeri, T.L.2    Guglisndolo, C.3
  • 4
    • 12544253371 scopus 로고    scopus 로고
    • Thermoactive extracellular proteases of Geobacillus caldoproteolyticus, sp. nov., from sewage sludge
    • doi:10.1007/s00792-004-0412-5
    • Chen XG, Stabnikova O, Tay JH, Wang JY, Tay STL (2004) Thermoactive extracellular proteases of Geobacillus caldoproteolyticus, sp. nov., from sewage sludge. Extremophiles 8: 489-498. doi: 10. 1007/s00792-004-0412-5.
    • (2004) Extremophiles , vol.8 , pp. 489-498
    • Chen, X.G.1    Stabnikova, O.2    Tay, J.H.3    Wang, J.Y.4    Tay, S.T.L.5
  • 5
    • 76349124432 scopus 로고    scopus 로고
    • Characterization of thermostable α-glucosidases from newly isolated Geobacillus sp. A333 and thermophilic bacterium A343
    • doi: 10. 1007/s11274-009-0127-y
    • Cihan CA, Cokmus C, Ozcan B (2009) Characterization of thermostable α-glucosidases from newly isolated Geobacillus sp. A333 and thermophilic bacterium A343. World J Microbiol Biotechnol 25: 2205-2217. doi: 10. 1007/s11274-009-0127-y.
    • (2009) World J Microbiol Biotechnol , vol.25 , pp. 2205-2217
    • Cihan, C.A.1    Cokmus, C.2    Ozcan, B.3
  • 6
    • 79954476256 scopus 로고    scopus 로고
    • Anoxybacillus salavatliensis sp. nov., an α-glucosidase producing, thermophilic bacterium isolated from Salavatli, Turkey
    • doi:10.1002/jobm.201000115
    • Cihan AC, Ozcan B, Cokmus C (2010) Anoxybacillus salavatliensis sp. nov., an α-glucosidase producing, thermophilic bacterium isolated from Salavatli, Turkey. J Basic Microbiol 50: 1-11. doi: 10. 1002/jobm. 201000115.
    • (2010) J Basic Microbiol , vol.50 , pp. 1-11
    • Cihan, A.C.1    Ozcan, B.2    Cokmus, C.3
  • 7
    • 0000738385 scopus 로고
    • The genus Bacillus
    • In: Sneath pHA (Ed.), Williams and Wilkins, Baltimore, ISBN: 0-683-07893-934
    • Claus D, Berkeley CW (1986) The genus Bacillus In: Sneath pHA (Ed.) Bergey's manual of systematic bacteriology, Vol 2. Williams and Wilkins, Baltimore, ISBN: 0-683-07893-934, 1105-1139.
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1105-1139
    • Claus, D.1    Berkeley, C.W.2
  • 8
    • 61349141945 scopus 로고    scopus 로고
    • Isolations of α-glucosidase-producing thermophilic bacilli from hot springs of Turkey
    • doi:10.1134/S002626170901008
    • Coleri A, Cokmus C, Ozcan B, Akkoc N, Akcelik M (2009) Isolations of α-glucosidase-producing thermophilic bacilli from hot springs of Turkey. Microbiology 78: 56-66. doi: 10. 1134/S002626170901008.
    • (2009) Microbiology , vol.78 , pp. 56-66
    • Coleri, A.1    Cokmus, C.2    Ozcan, B.3    Akkoc, N.4    Akcelik, M.5
  • 10
    • 1242306682 scopus 로고    scopus 로고
    • Newly isolated Bacillus clausii GMBAE 42: an alkaline protease producer capable to grow under highly alkaline conditions
    • doi:10.1046/j.1365-2672.2003.02153.x
    • Denizci AA, Kazan D, Abeln ECA, Erarslan A (2004) Newly isolated Bacillus clausii GMBAE 42: an alkaline protease producer capable to grow under highly alkaline conditions. J Appl Microbiol 96: 320-327. doi: 10. 1046/j. 1365-2672. 2003. 02153. x.
    • (2004) J Appl Microbiol , vol.96 , pp. 320-327
    • Denizci, A.A.1    Kazan, D.2    Abeln, E.C.A.3    Erarslan, A.4
  • 11
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • In: Munro HN, Academic Press, New York
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, pp 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 12
    • 85088333940 scopus 로고    scopus 로고
    • rDNA operon copy number reflects ecological strategies of bacteria
    • doi:0099-2240/00/$04.00+0
    • Klappenbach JA, Dunbar JM, Schmidt TM (2001) rDNA operon copy number reflects ecological strategies of bacteria. Nucleic Acids Res 29: 181-184. doi: 0099-2240/00/$04. 00+0.
    • (2001) Nucleic Acids Res , vol.29 , pp. 181-184
    • Klappenbach, J.A.1    Dunbar, J.M.2    Schmidt, T.M.3
  • 13
    • 9944250586 scopus 로고    scopus 로고
    • Characterization of thermophilic proteolytic spore-forming bacteria from a geothermal site in lithuania based on 16S rRNA RFLP and ITS-PCR analyses
    • doi:10.1023/A:1021440208887
    • Kuisiene N, Jomantiene R, Valiunas D, Chitavichius D (2002) Characterization of thermophilic proteolytic spore-forming bacteria from a geothermal site in lithuania based on 16S rRNA RFLP and ITS-PCR analyses. Microbiology 71: 712-716. doi: 10. 1023/A: 1021440208887.
    • (2002) Microbiology , vol.71 , pp. 712-716
    • Kuisiene, N.1    Jomantiene, R.2    Valiunas, D.3    Chitavichius, D.4
  • 14
    • 84860314362 scopus 로고    scopus 로고
    • Identification of Geobacillus stearothermophilus by restriction digestion with AluI of the amplified 16S rRNA
    • Kuisienė N, Raugalas J, Čitavičius D (2007) Identification of Geobacillus stearothermophilus by restriction digestion with AluI of the amplified 16S rRNA. Biologija 53: 62-66.
    • (2007) Biologija , vol.53 , pp. 62-66
    • Kuisiene, N.1    Raugalas, J.2    Čitavičius, D.3
  • 15
    • 0032872147 scopus 로고    scopus 로고
    • Isolation and characterization of a thermophilic lipase from Bacillus thermoleovorans ID-1 FEMS
    • doi: 10. 1111/j. 1574-6968. 1999. tb08754. x
    • Lee D, Koh Y, Kim K, Kim B, Choi H, Kim D, Suhartono MT, Pyun Y (1999) Isolation and characterization of a thermophilic lipase from Bacillus thermoleovorans ID-1 FEMS. Microbiol Lett 179: 393-400. doi: 10. 1111/j. 1574-6968. 1999. tb08754. x.
    • (1999) Microbiol Lett , vol.179 , pp. 393-400
    • Lee, D.1    Koh, Y.2    Kim, K.3    Kim, B.4    Choi, H.5    Kim, D.6    Suhartono, M.T.7    Pyun, Y.8
  • 17
    • 0001897446 scopus 로고    scopus 로고
    • Phylogeny of bacteria beyond the 16S rRNA standard
    • Ludwig W, Schleifer KH (1999) Phylogeny of bacteria beyond the 16S rRNA standard. ASM News 65: 752-757.
    • (1999) ASM News , vol.65 , pp. 752-757
    • Ludwig, W.1    Schleifer, K.H.2
  • 18
    • 77954665328 scopus 로고    scopus 로고
    • Reclassification of Geobacillus pallidus (Scholz 1988) Banat et al. 2004 as Aeribacillus pallidus gen. nov., comb. nov
    • doi:ijs.0.003699-0
    • Miñana-Galbis D, Pinzón DL, Lorén JG, Manresa A, Oliart-Ros RM et al (2010) Reclassification of Geobacillus pallidus (Scholz 1988) Banat et al. 2004 as Aeribacillus pallidus gen. nov., comb. nov. Int J Syst Evol Microbiol 60: 1600-1604. doi: ijs. 0. 003699-0.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1600-1604
    • Miñana-Galbis, D.1    Pinzón, D.L.2    Lorén, J.G.3    Manresa, A.4    Oliart-Ros, R.M.5
  • 19
    • 0032201591 scopus 로고    scopus 로고
    • Genotypic characterization of thermophilic bacilli: a study of new soil isolates and several reference strains
    • doi:10.1016/S0923-2508(99)80018-7
    • Mora DM, Fortina MG, Nicastro G, Parini C, Manachini PL (1998) Genotypic characterization of thermophilic bacilli: a study of new soil isolates and several reference strains. Res Microbiol 149: 711-722. doi: 10. 1016/S0923-2508(99)80018-7.
    • (1998) Res Microbiol , vol.149 , pp. 711-722
    • Mora, D.M.1    Fortina, M.G.2    Nicastro, G.3    Parini, C.4    Manachini, P.L.5
  • 20
    • 0035064602 scopus 로고    scopus 로고
    • Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus
    • as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans
    • Nazina TN, Tourova TP, Poltaraus AB, Novikova EV, Grigoryan AA, Ivanova AE, Lysenko AM, Petrunyaka VV, Osipov GA, Belyaev SS, Ivanov MV (2001) Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int J Syst Evol Microbiol 51: 433-446.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 433-446
    • Nazina, T.N.1    Tourova, T.P.2    Poltaraus, A.B.3    Novikova, E.V.4    Grigoryan, A.A.5    Ivanova, A.E.6    Lysenko, A.M.7    Petrunyaka, V.V.8    Osipov, G.A.9    Belyaev, S.S.10    Ivanov, M.V.11
  • 21
    • 9944244530 scopus 로고    scopus 로고
    • Geobacillus gargensis sp. nov., a novel thermophile from a hot spring, and the reclassification of Bacillus vulcani as Geobacillus vulcani comb. nov
    • doi:10.1099/ijs.0.02932-0
    • Nazina TN, Lebedeva EV, Poltaraus AB, Tourova TP, Grigoryan AA, DSh Sokolova, Lysenko AM, Osipov GA (2004) Geobacillus gargensis sp. nov., a novel thermophile from a hot spring, and the reclassification of Bacillus vulcani as Geobacillus vulcani comb. nov. Int J Syst Evol Microbiol 54: 2019-2024. doi: 10. 1099/ijs. 0. 02932-0.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2019-2024
    • Nazina, T.N.1    Lebedeva, E.V.2    Poltaraus, A.B.3    Tourova, T.P.4    Grigoryan, A.A.5    Dsh, S.6    Lysenko, A.M.7    Osipov, G.A.8
  • 22
    • 0018662498 scopus 로고
    • A thermostable, sequence-specific restriction endonuclease from Bacillus stearothermophilus: BstPI
    • doi:10.1093/nar/7.6.1429
    • Pugatsch T, Weber H (1979) A thermostable, sequence-specific restriction endonuclease from Bacillus stearothermophilus: BstPI. Nucleic Acids Res 7: 1429-1444. doi: 10. 1093/nar/7. 6. 1429.
    • (1979) Nucleic Acids Res , vol.7 , pp. 1429-1444
    • Pugatsch, T.1    Weber, H.2
  • 23
    • 0027955374 scopus 로고
    • The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rRNA analysis
    • doi:10.1111/j.1574-6968.1994.tb06639.x
    • Rainey FA, Fritze D, Stackebrandt E (1994) The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rRNA analysis. FEMS Microbiol Lett 115: 205-211. doi: 10. 1111/j. 1574-6968. 1994. tb06639. x.
    • (1994) FEMS Microbiol Lett , vol.115 , pp. 205-211
    • Rainey, F.A.1    Fritze, D.2    Stackebrandt, E.3
  • 24
    • 0141482264 scopus 로고    scopus 로고
    • 16S-ARDRA, a tool for identification of lactic acid bacteria isolated from grape must and wine
    • doi:10.1078/072320203322497446
    • Rodas AM, Ferrer S, Pardo I (2003) 16S-ARDRA, a tool for identification of lactic acid bacteria isolated from grape must and wine. Syst Appl Microbiol 26: 412-422. doi: 10. 1078/072320203322497446.
    • (2003) Syst Appl Microbiol , vol.26 , pp. 412-422
    • Rodas, A.M.1    Ferrer, S.2    Pardo, I.3
  • 25
    • 24944433946 scopus 로고    scopus 로고
    • Updating prokaryotic taxonomy
    • doi:10.1128/JB.187.18.6255-6257.2005
    • Rosselló-Mora R (2005) Updating prokaryotic taxonomy. J Bacteriol 187: 6255-6257. doi: 10. 1128/JB. 187. 18. 6255-6257. 2005.
    • (2005) J Bacteriol , vol.187 , pp. 6255-6257
    • Rosselló-Mora, R.1
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 47849096651 scopus 로고    scopus 로고
    • Cloning, expression, purification and characterisation of a thermostable chitinase from Bacillus licheniformis A1
    • Sandalli C, Kacagan M, Canakci S, Belduz AO (2008) Cloning, expression, purification and characterisation of a thermostable chitinase from Bacillus licheniformis A1. Ann Microbiol 58: 245-251.
    • (2008) Ann Microbiol , vol.58 , pp. 245-251
    • Sandalli, C.1    Kacagan, M.2    Canakci, S.3    Belduz, A.O.4
  • 28
    • 80053368552 scopus 로고
    • Bacillus pallidus sp. nov. in validation of the publication of new names and new combinations previously effectively published outside the IJSB, List no. 24
    • Scholz T, Demharter W, Hensel R, Kandler O (1988) Bacillus pallidus sp. nov. in validation of the publication of new names and new combinations previously effectively published outside the IJSB, List no. 24. Int J Syst Bacteriol 38: 136-137.
    • (1988) Int J Syst Bacteriol , vol.38 , pp. 136-137
    • Scholz, T.1    Demharter, W.2    Hensel, R.3    Kandler, O.4
  • 29
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present apecies definition in bacteriology
    • doi:10.1099/00207713-44-4-846
    • Stackebrandt E, Goebel BM (1994) Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present apecies definition in bacteriology. Int J System Bacteriol 44: 846-849. doi: 10. 1099/00207713-44-4-846.
    • (1994) Int J System Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 32
    • 0347594285 scopus 로고
    • DNA polymerase from mesophilic and thermophilic bacteria. I. Purification and properties of DNA polymerase from Bacillus licheniformis and Bacillus stearothermophilus
    • doi:10.1016/0005-2787(72)90240-7
    • Stenesh J, Roe BA (1972) DNA polymerase from mesophilic and thermophilic bacteria. I. Purification and properties of DNA polymerase from Bacillus licheniformis and Bacillus stearothermophilus. Biochim Biophys Acta 272: 156-166. doi: 10. 1016/0005-2787(72)90240-7.
    • (1972) Biochim Biophys Acta , vol.272 , pp. 156-166
    • Stenesh, J.1    Roe, B.A.2
  • 33
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4. 0
    • doi: 10. 1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599. doi: 10. 1093/molbev/msm092.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 34
    • 0033950266 scopus 로고    scopus 로고
    • Thermobacillus xylanilyticus gen. Nov., sp. nov., a new aerobic thermophilic xylan-degrading bacterium isolated from farm soil
    • Touzel JP, O'Donohue M, Debeire P, Samain E, Breton C (2000) Thermobacillus xylanilyticus gen. Nov., sp. nov., a new aerobic thermophilic xylan-degrading bacterium isolated from farm soil. Int J Syst Evol Microbiol 50: 315-320.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 315-320
    • Touzel, J.P.1    O'Donohue, M.2    Debeire, P.3    Samain, E.4    Breton, C.5
  • 37
    • 0027852329 scopus 로고
    • A polyphasic taxonomic study of thermophilic bacilli from a wide geographical area
    • doi:10.1007/BF00873093
    • White D, Sharp RJ, Priest FG (1993) A polyphasic taxonomic study of thermophilic bacilli from a wide geographical area. Antonie van Leeuwenhoek 64: 357-386. doi: 10. 1007/BF00873093.
    • (1993) Antonie Van Leeuwenhoek , vol.64 , pp. 357-386
    • White, D.1    Sharp, R.J.2    Priest, F.G.3
  • 38
    • 0032142867 scopus 로고    scopus 로고
    • Thermozymes: biotechnology and structure-function relationships
    • Zeikus JG, Vieille C, Savchenko A (1998) Thermozymes: biotechnology and structure-function relationships. Extremophiles 2: 179-183.
    • (1998) Extremophiles , vol.2 , pp. 179-183
    • Zeikus, J.G.1    Vieille, C.2    Savchenko, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.