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Volumn 17, Issue 10, 2015, Pages 4019-4034

Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalization

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENOME; BIOFILM; FLAGELLUM; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; MULTIGENE FAMILY; PHYLOGENY; PLASMID; REPLICON; ROSEOBACTER; SEA;

EID: 85027925514     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12947     Document Type: Article
Times cited : (27)

References (81)
  • 2
    • 33645215770 scopus 로고    scopus 로고
    • Signal transduction in bacterial chemotaxis
    • Baker, M.D., Wolanin, P.M., and Stock, J.B. (2006) Signal transduction in bacterial chemotaxis. Bioessays 28: 9–22.
    • (2006) Bioessays , vol.28 , pp. 9-22
    • Baker, M.D.1    Wolanin, P.M.2    Stock, J.B.3
  • 5
    • 56949108575 scopus 로고    scopus 로고
    • Who's in charge here? Regulating cell cycle regulators
    • Bowers, L.M., Shapland, E.B., and Ryan, K.R. (2008) Who's in charge here? Regulating cell cycle regulators. Curr Opin Microbiol 11: 547–552.
    • (2008) Curr Opin Microbiol , vol.11 , pp. 547-552
    • Bowers, L.M.1    Shapland, E.B.2    Ryan, K.R.3
  • 6
    • 77951601819 scopus 로고    scopus 로고
    • The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis
    • Brilli, M., Fondi, M., Fani, R., Mengoni, A., Ferri, L., Bazzicalupo, M., and Biondi, E.G. (2010) The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis. BMC Syst Biol 4: 52.
    • (2010) BMC Syst Biol , vol.4 , pp. 52
    • Brilli, M.1    Fondi, M.2    Fani, R.3    Mengoni, A.4    Ferri, L.5    Bazzicalupo, M.6    Biondi, E.G.7
  • 7
    • 43949120140 scopus 로고    scopus 로고
    • Diversity, ecology, and genomics of the Roseobacter clade: a short overview
    • Brinkhoff, T., Giebel, H.A., and Simon, M. (2008) Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch Microbiol 189: 531–539.
    • (2008) Arch Microbiol , vol.189 , pp. 531-539
    • Brinkhoff, T.1    Giebel, H.A.2    Simon, M.3
  • 8
    • 33646709425 scopus 로고    scopus 로고
    • Flavonoid-inducible modifications to rhamnan O antigens are necessary for Rhizobium sp. strain NGR234-legume symbioses
    • Broughton, W.J., Hanin, M., Relic, B., Kopciñska, J., Golinowski, W., Simsek, S., et al. (2006) Flavonoid-inducible modifications to rhamnan O antigens are necessary for Rhizobium sp. strain NGR234-legume symbioses. J Bacteriol 188: 3654–3663.
    • (2006) J Bacteriol , vol.188 , pp. 3654-3663
    • Broughton, W.J.1    Hanin, M.2    Relic, B.3    Kopciñska, J.4    Golinowski, W.5    Simsek, S.6
  • 9
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540–552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 10
    • 84859007974 scopus 로고    scopus 로고
    • Regulation of chromosomal replication in Caulobacter crescentus
    • Collier, J. (2012) Regulation of chromosomal replication in Caulobacter crescentus. Plasmid 67: 76–87.
    • (2012) Plasmid , vol.67 , pp. 76-87
    • Collier, J.1
  • 12
    • 0032169271 scopus 로고    scopus 로고
    • Conservation of gene order: a fingerprint of proteins that physically interact
    • Dandekar, T., Snel, B., Huynen, M., and Bork, P. (1998) Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci 23: 324–328.
    • (1998) Trends Biochem Sci , vol.23 , pp. 324-328
    • Dandekar, T.1    Snel, B.2    Huynen, M.3    Bork, P.4
  • 13
    • 0032478505 scopus 로고    scopus 로고
    • The turn of the screw: the bacterial flagellar motor
    • DeRosier, D.J. (1998) The turn of the screw: the bacterial flagellar motor. Cell 93: 17–20.
    • (1998) Cell , vol.93 , pp. 17-20
    • DeRosier, D.J.1
  • 14
    • 84871435690 scopus 로고    scopus 로고
    • Evolution of intracellular compartmentalization
    • Diekmann, Y., and Pereira-Leal, J.B. (2013) Evolution of intracellular compartmentalization. Biochem J 449: 319–331.
    • (2013) Biochem J , vol.449 , pp. 319-331
    • Diekmann, Y.1    Pereira-Leal, J.B.2
  • 15
    • 77955867901 scopus 로고    scopus 로고
    • Cellular polarity in prokaryotic organisms
    • Dworkin, J. (2009) Cellular polarity in prokaryotic organisms. Cold Spring Harb Perspect Biol 1: a003368.
    • (2009) Cold Spring Harb Perspect Biol , vol.1 , pp. a003368
    • Dworkin, J.1
  • 16
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar, R.C. (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform 5: 113.
    • (2004) BMC Bioinform , vol.5 , pp. 113
    • Edgar, R.C.1
  • 17
    • 10344251948 scopus 로고
    • Sulphated polysaccharide synthesis in brown algae
    • Evans, L.V., Simpson, M., and Callow, M.E. (1973) Sulphated polysaccharide synthesis in brown algae. Planta 110: 237–252.
    • (1973) Planta , vol.110 , pp. 237-252
    • Evans, L.V.1    Simpson, M.2    Callow, M.E.3
  • 18
    • 84924901819 scopus 로고    scopus 로고
    • Plasmid curing and the loss of grip – the 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae
    • Frank, O., Michael, V., Päuker, O., Boedeker, C., Jogler, C., Rohde, M., and Petersen, J. (2015) Plasmid curing and the loss of grip – the 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae. Syst Appl Microbiol 38: 120–127.
    • (2015) Syst Appl Microbiol , vol.38 , pp. 120-127
    • Frank, O.1    Michael, V.2    Päuker, O.3    Boedeker, C.4    Jogler, C.5    Rohde, M.6    Petersen, J.7
  • 19
    • 41349112730 scopus 로고    scopus 로고
    • Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes
    • Gao, F., and Zhang, C.T. (2008) Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes. BMC Bioinform 9: 79.
    • (2008) BMC Bioinform , vol.9 , pp. 79
    • Gao, F.1    Zhang, C.T.2
  • 21
    • 84893311514 scopus 로고    scopus 로고
    • Biophysical characterization of the C-terminal region of FliG, an essential rotor component of the Na+-driven flagellar motor
    • Gohara, M., Kobayashi, S., Abe-Yoshizumi, R., Nonoyama, N., Kojima, S., Asami, Y., and Homma, M. (2014) Biophysical characterization of the C-terminal region of FliG, an essential rotor component of the Na+-driven flagellar motor. J Biochem 155: 83–89.
    • (2014) J Biochem , vol.155 , pp. 83-89
    • Gohara, M.1    Kobayashi, S.2    Abe-Yoshizumi, R.3    Nonoyama, N.4    Kojima, S.5    Asami, Y.6    Homma, M.7
  • 22
    • 0142030034 scopus 로고    scopus 로고
    • Pseudaminic acid, the major modification on Campylobacter flagellin, is synthesized via the Cj1293 gene
    • Goon, S., Kelly, J.F., Logan, S.M., Ewing, C.P., and Guerry, P. (2003) Pseudaminic acid, the major modification on Campylobacter flagellin, is synthesized via the Cj1293 gene. Mol Microbiol 50: 659–671.
    • (2003) Mol Microbiol , vol.50 , pp. 659-671
    • Goon, S.1    Kelly, J.F.2    Logan, S.M.3    Ewing, C.P.4    Guerry, P.5
  • 23
    • 1542301478 scopus 로고    scopus 로고
    • Phylogenetic and functional diversity of the cultivable bacterial community associated with the paralytic shellfish poisoning dinoflagellate Gymnodinium catenatum
    • Green, D.H., Llewellyn, L.E., Negri, A.P., Blackburn, S.I., and Bolch, C.J. (2004) Phylogenetic and functional diversity of the cultivable bacterial community associated with the paralytic shellfish poisoning dinoflagellate Gymnodinium catenatum. FEMS Microbiol Ecol 47: 345–357.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 345-357
    • Green, D.H.1    Llewellyn, L.E.2    Negri, A.P.3    Blackburn, S.I.4    Bolch, C.J.5
  • 24
    • 84882275249 scopus 로고    scopus 로고
    • Regulation of flagellar motility during biofilm formation
    • Guttenplan, S.B., and Kearns, D.B. (2013) Regulation of flagellar motility during biofilm formation. FEMS Microbiol Rev 37: 849–871.
    • (2013) FEMS Microbiol Rev , vol.37 , pp. 849-871
    • Guttenplan, S.B.1    Kearns, D.B.2
  • 25
    • 77950802816 scopus 로고    scopus 로고
    • Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid
    • Harrison, P.W., Lower, R.P., Kim, N.K., and Young, J.P. (2010) Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid. Trends Microbiol 18: 141–148.
    • (2010) Trends Microbiol , vol.18 , pp. 141-148
    • Harrison, P.W.1    Lower, R.P.2    Kim, N.K.3    Young, J.P.4
  • 26
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath, P., and Barrangou, R. (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science 327: 167–170.
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 27
    • 0038476173 scopus 로고    scopus 로고
    • Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models
    • Jansen, R., Bussemaker, H.J., and Gerstein, M. (2003) Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. Nucleic Acids Res 31: 2242–2251.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2242-2251
    • Jansen, R.1    Bussemaker, H.J.2    Gerstein, M.3
  • 28
    • 77955652704 scopus 로고    scopus 로고
    • A field guide to bacterial swarming motility
    • Kearns, D.B. (2010) A field guide to bacterial swarming motility. Nat Rev Microbiol 8: 634–644.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 634-644
    • Kearns, D.B.1
  • 29
    • 84875553632 scopus 로고    scopus 로고
    • New insights into replisome fluidity during chromosome replication
    • Kurth, I., and O'Donnell, M. (2013) New insights into replisome fluidity during chromosome replication. Trends Biochem Sci 38: 195–203.
    • (2013) Trends Biochem Sci , vol.38 , pp. 195-203
    • Kurth, I.1    O'Donnell, M.2
  • 30
    • 0028914833 scopus 로고
    • Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima
    • Lafay, B., Ruimy, R., de Traubenberg, C.R., Breittmayer, V., Gauthier, M.J., and Christen, R. (1995) Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima. Int J Syst Bacteriol 45: 290–296.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 290-296
    • Lafay, B.1    Ruimy, R.2    de Traubenberg, C.R.3    Breittmayer, V.4    Gauthier, M.J.5    Christen, R.6
  • 31
    • 61449201423 scopus 로고    scopus 로고
    • IslandViewer: an integrated interface for computational identification and visualization of genomic islands
    • Langille, M.G., and Brinkman, F.S. (2009) IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 25: 664–665.
    • (2009) Bioinformatics , vol.25 , pp. 664-665
    • Langille, M.G.1    Brinkman, F.S.2
  • 32
    • 0004170691 scopus 로고    scopus 로고
    • 2nd, edn.,, Amsterdam, The Netherlands, Elsevier Science B.V
    • Legendre, P., and Legendre, L. (1998) Numerical Ecology, 2nd edn., Amsterdam, The Netherlands: Elsevier Science B.V.
    • (1998) Numerical Ecology
    • Legendre, P.1    Legendre, L.2
  • 34
    • 34948866756 scopus 로고    scopus 로고
    • Origins of flagellar gene operons and secondary flagellar systems
    • Liu, R., and Ochman, H. (2007) Origins of flagellar gene operons and secondary flagellar systems. J Bacteriol 189: 7098–7104.
    • (2007) J Bacteriol , vol.189 , pp. 7098-7104
    • Liu, R.1    Ochman, H.2
  • 35
    • 84914148749 scopus 로고    scopus 로고
    • Evolutionary ecology of the marine roseobacter clade
    • Luo, H., and Moran, M.A. (2014) Evolutionary ecology of the marine roseobacter clade. Microbiol Mol Biol Rev 78: 573–587.
    • (2014) Microbiol Mol Biol Rev , vol.78 , pp. 573-587
    • Luo, H.1    Moran, M.A.2
  • 38
    • 4944262629 scopus 로고    scopus 로고
    • Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes
    • Medrano-Soto, A., Moreno-Hagelsieb, G., Vinuesa, P., Christen, J.A., and Collado-Vides, J. (2004) Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes. Mol Biol Evol 21: 1884–1894.
    • (2004) Mol Biol Evol , vol.21 , pp. 1884-1894
    • Medrano-Soto, A.1    Moreno-Hagelsieb, G.2    Vinuesa, P.3    Christen, J.A.4    Collado-Vides, J.5
  • 39
    • 19944408938 scopus 로고    scopus 로고
    • Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
    • Moran, M.A., Buchan, A., González, J.M., Heidelberg, J.F., Whitman, W.B., Keine, R.P., et al. (2004) Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432: 910–913.
    • (2004) Nature , vol.432 , pp. 910-913
    • Moran, M.A.1    Buchan, A.2    González, J.M.3    Heidelberg, J.F.4    Whitman, W.B.5    Keine, R.P.6
  • 43
    • 0028882772 scopus 로고
    • Autocatalytic gene expression occurs via transertion and membrane domain formation and underlies differentiation in bacteria: a model
    • Norris, V., and Madsen, M.S. (1995) Autocatalytic gene expression occurs via transertion and membrane domain formation and underlies differentiation in bacteria: a model. J Mol Biol 253: 739–748.
    • (1995) J Mol Biol , vol.253 , pp. 739-748
    • Norris, V.1    Madsen, M.S.2
  • 45
    • 0024039685 scopus 로고
    • The replicative origin of the E. coli chromosome binds to cell membranes only when hemimethylated
    • Ogden, G.B., Pratt, M.J., and Schaechter, M. (1988) The replicative origin of the E. coli chromosome binds to cell membranes only when hemimethylated. Cell 54: 127–135.
    • (1988) Cell , vol.54 , pp. 127-135
    • Ogden, G.B.1    Pratt, M.J.2    Schaechter, M.3
  • 47
    • 84888203970 scopus 로고    scopus 로고
    • You are what you talk: quorum sensing induces individual morphologies and cell division modes in Dinoroseobacter shibae
    • Patzelt, D., Wang, H., Buchholz, I., Rohde, M., Gröbe, L., Pradella, S., et al. (2013) You are what you talk: quorum sensing induces individual morphologies and cell division modes in Dinoroseobacter shibae. ISME J 7: 2274–2286.
    • (2013) ISME J , vol.7 , pp. 2274-2286
    • Patzelt, D.1    Wang, H.2    Buchholz, I.3    Rohde, M.4    Gröbe, L.5    Pradella, S.6
  • 48
    • 0031888937 scopus 로고    scopus 로고
    • Regulation of photosynthetic gene expression in purple bacteria
    • Pemberton, J.M., Horne, I.M., and McEwan, A.G. (1998) Regulation of photosynthetic gene expression in purple bacteria. Microbiology 144: 267–278.
    • (1998) Microbiology , vol.144 , pp. 267-278
    • Pemberton, J.M.1    Horne, I.M.2    McEwan, A.G.3
  • 50
    • 79958220279 scopus 로고    scopus 로고
    • Phylogeny and compatibility: plasmid classification in the genomics era
    • Petersen, J. (2011) Phylogeny and compatibility: plasmid classification in the genomics era. Arch Microbiol 193: 313–321.
    • (2011) Arch Microbiol , vol.193 , pp. 313-321
    • Petersen, J.1
  • 51
    • 70349686606 scopus 로고    scopus 로고
    • Diversity and evolution of repABC type plasmids in Rhodobacterales
    • Petersen, J., Brinkmann, H., and Pradella, S. (2009) Diversity and evolution of repABC type plasmids in Rhodobacterales. Environ Microbiol 11: 2627–2638.
    • (2009) Environ Microbiol , vol.11 , pp. 2627-2638
    • Petersen, J.1    Brinkmann, H.2    Pradella, S.3
  • 52
    • 79952164212 scopus 로고    scopus 로고
    • Origin and evolution of a novel DnaA-like plasmid replication type in Rhodobacterales
    • Petersen, J., Brinkmann, H., Berger, M., Brinkhoff, T., Päuker, O., and Pradella, S. (2011) Origin and evolution of a novel DnaA-like plasmid replication type in Rhodobacterales. Mol Biol Evol 28: 1229–1240.
    • (2011) Mol Biol Evol , vol.28 , pp. 1229-1240
    • Petersen, J.1    Brinkmann, H.2    Berger, M.3    Brinkhoff, T.4    Päuker, O.5    Pradella, S.6
  • 54
    • 84876672324 scopus 로고    scopus 로고
    • Extrachromosomal, extraordinary and essential – the plasmids of the Roseobacter clade
    • Petersen, J., Frank, O., Göker, M., and Pradella, S. (2013a) Extrachromosomal, extraordinary and essential – the plasmids of the Roseobacter clade. Appl Microbiol Biotechnol 97: 2805–2815.
    • (2013) Appl Microbiol Biotechnol , vol.97 , pp. 2805-2815
    • Petersen, J.1    Frank, O.2    Göker, M.3    Pradella, S.4
  • 55
    • 34247895585 scopus 로고    scopus 로고
    • A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides
    • Poggio, S., Abreu-Goodger, C., Fabela, S., Osorio, A., Dreyfus, G., Vinuesa, P., and Camarena, L. (2007) A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides. J Bacteriol 189: 3208–3216.
    • (2007) J Bacteriol , vol.189 , pp. 3208-3216
    • Poggio, S.1    Abreu-Goodger, C.2    Fabela, S.3    Osorio, A.4    Dreyfus, G.5    Vinuesa, P.6    Camarena, L.7
  • 56
    • 76949087152 scopus 로고    scopus 로고
    • Genome organisation of the marine Roseobacter clade member Marinovum algicola
    • Pradella, S., Päuker, O., and Petersen, J. (2010) Genome organisation of the marine Roseobacter clade member Marinovum algicola. Arch Microbiol 192: 115–126.
    • (2010) Arch Microbiol , vol.192 , pp. 115-126
    • Pradella, S.1    Päuker, O.2    Petersen, J.3
  • 57
    • 22444441190 scopus 로고    scopus 로고
    • Operon formation is driven by co-regulation and not by horizontal gene transfer
    • Price, M.N., Huang, K.H., Arkin, A.P., and Alm, E.J. (2005) Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res 15: 809–819.
    • (2005) Genome Res , vol.15 , pp. 809-819
    • Price, M.N.1    Huang, K.H.2    Arkin, A.P.3    Alm, E.J.4
  • 58
    • 0030034983 scopus 로고    scopus 로고
    • Cell cycle control by an essential bacterial two-component signal transduction protein
    • Quon, K.C., Marczynski, G.T., and Shapiro, L. (1996) Cell cycle control by an essential bacterial two-component signal transduction protein. Cell 84: 83–93.
    • (1996) Cell , vol.84 , pp. 83-93
    • Quon, K.C.1    Marczynski, G.T.2    Shapiro, L.3
  • 59
    • 0033677816 scopus 로고    scopus 로고
    • Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa
    • Rahim, R., Burrows, L.L., Monteiro, M.A., Perry, M.B., and Lam, J.S. (2000) Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa. Microbiology 146: 2803–2814.
    • (2000) Microbiology , vol.146 , pp. 2803-2814
    • Rahim, R.1    Burrows, L.L.2    Monteiro, M.A.3    Perry, M.B.4    Lam, J.S.5
  • 60
    • 1942498070 scopus 로고    scopus 로고
    • Selection for gene clustering by tandem duplication
    • Reams, A.B., and Neidle, E.L. (2004) Selection for gene clustering by tandem duplication. Annu Rev Microbiol 58: 119–142.
    • (2004) Annu Rev Microbiol , vol.58 , pp. 119-142
    • Reams, A.B.1    Neidle, E.L.2
  • 61
    • 73349101910 scopus 로고    scopus 로고
    • Movement and equipositioning of plasmids by ParA filament disassembly
    • Ringgaard, S., van Zon, J., Howard, M., and Gerdes, K. (2009) Movement and equipositioning of plasmids by ParA filament disassembly. Proc Natl Acad Sci USA 106: 19369–19374.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 19369-19374
    • Ringgaard, S.1    van Zon, J.2    Howard, M.3    Gerdes, K.4
  • 62
    • 3142679507 scopus 로고    scopus 로고
    • The replication-related organization of bacterial genomes
    • Rocha, E.P. (2004) The replication-related organization of bacterial genomes. Microbiology 150: 1609–1627.
    • (2004) Microbiology , vol.150 , pp. 1609-1627
    • Rocha, E.P.1
  • 63
    • 84874914744 scopus 로고    scopus 로고
    • Cyclic di-GMP: the first 25 years of a universal bacterial second messenger
    • Römling, U., Galperin, M.Y., and Gomelsky, M. (2013) Cyclic di-GMP: the first 25 years of a universal bacterial second messenger. Microbiol Mol Biol Rev 77: 1–52.
    • (2013) Microbiol Mol Biol Rev , vol.77 , pp. 1-52
    • Römling, U.1    Galperin, M.Y.2    Gomelsky, M.3
  • 64
    • 0035019730 scopus 로고    scopus 로고
    • Type II secretion and pathogenesis
    • Sandkvist, M. (2001) Type II secretion and pathogenesis. Infect Immun 69: 3523–3535.
    • (2001) Infect Immun , vol.69 , pp. 3523-3535
    • Sandkvist, M.1
  • 65
    • 84882745417 scopus 로고    scopus 로고
    • Acyl-homoserine lactone quorum sensing: from evolution to application
    • Schuster, M., Sexton, D.J., Diggle, S.P., and Greenberg, E.P. (2013) Acyl-homoserine lactone quorum sensing: from evolution to application. Annu Rev Microbiol 67: 43–63.
    • (2013) Annu Rev Microbiol , vol.67 , pp. 43-63
    • Schuster, M.1    Sexton, D.J.2    Diggle, S.P.3    Greenberg, E.P.4
  • 66
    • 79953096570 scopus 로고    scopus 로고
    • The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis
    • Seyedsayamdost, M.R., Case, R.J., Kolter, R., and Clardy, J. (2011a) The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis. Nat Chem 3: 331–335.
    • (2011) Nat Chem , vol.3 , pp. 331-335
    • Seyedsayamdost, M.R.1    Case, R.J.2    Kolter, R.3    Clardy, J.4
  • 67
    • 80755136928 scopus 로고    scopus 로고
    • Roseobacticides: small molecule modulators of an algal-bacterial symbiosis
    • Seyedsayamdost, M.R., Carr, G., Kolter, R., and Clardy, J. (2011b) Roseobacticides: small molecule modulators of an algal-bacterial symbiosis. J Am Chem Soc 133: 18343–18349.
    • (2011) J Am Chem Soc , vol.133 , pp. 18343-18349
    • Seyedsayamdost, M.R.1    Carr, G.2    Kolter, R.3    Clardy, J.4
  • 68
    • 0023650543 scopus 로고
    • The codon adaptation index – a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P.M., and Li, W.H. (1987) The codon adaptation index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15: 1281–1295.
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 69
    • 0042838103 scopus 로고    scopus 로고
    • A dual binding site for integration host factor and the response regulator CtrA inside the Caulobacter crescentus replication origin
    • Siam, R., Brassinga, A.K., and Marczynski, G.T. (2003) A dual binding site for integration host factor and the response regulator CtrA inside the Caulobacter crescentus replication origin. J Bacteriol 185: 5563–5572.
    • (2003) J Bacteriol , vol.185 , pp. 5563-5572
    • Siam, R.1    Brassinga, A.K.2    Marczynski, G.T.3
  • 70
    • 70349493025 scopus 로고    scopus 로고
    • Surface colonization by marine roseobacters: integrating genotype and phenotype
    • Slightom, R.N., and Buchan, A. (2009) Surface colonization by marine roseobacters: integrating genotype and phenotype. Appl Environ Microbiol 75: 6027–6037.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6027-6037
    • Slightom, R.N.1    Buchan, A.2
  • 71
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web servers
    • Stamatakis, A., Hoover, P., and Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Syst Biol 57: 758–771.
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 72
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: an R package for assessing the uncertainty in hierarchical clustering
    • Suzuki, R., and Shimodaira, H. (2006) Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22: 1540–1542.
    • (2006) Bioinformatics , vol.22 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2
  • 74
    • 78650527330 scopus 로고    scopus 로고
    • Most harmful algal bloom species are vitamin B1 and B12 auxotrophs
    • Tang, Y.Z., Koch, F., and Gobler, C.J. (2010) Most harmful algal bloom species are vitamin B1 and B12 auxotrophs. Proc Natl Acad Sci USA 107: 20756–20761.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 20756-20761
    • Tang, Y.Z.1    Koch, F.2    Gobler, C.J.3
  • 75
    • 15744376527 scopus 로고    scopus 로고
    • The structure and function of the bacterial chromosome
    • Thanbichler, M., Viollier, P.H., and Shapiro, L. (2005) The structure and function of the bacterial chromosome. Curr Opin Genet Dev 15: 153–162.
    • (2005) Curr Opin Genet Dev , vol.15 , pp. 153-162
    • Thanbichler, M.1    Viollier, P.H.2    Shapiro, L.3
  • 76
    • 84871308793 scopus 로고    scopus 로고
    • Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life
    • Thole, S., Kalhoefer, D., Voget, S., Berger, M., Engelhardt, T., Liesegang, H., et al. (2012) Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life. ISME J 6: 2229–2244.
    • (2012) ISME J , vol.6 , pp. 2229-2244
    • Thole, S.1    Kalhoefer, D.2    Voget, S.3    Berger, M.4    Engelhardt, T.5    Liesegang, H.6
  • 77
    • 84877090640 scopus 로고    scopus 로고
    • Poles apart: arctic and antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin
    • Vollmers, J., Voget, S., Dietrich, S., Gollnow, K., Smits, M., Meyer, K., et al. (2013) Poles apart: arctic and antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin. PLoS ONE 8: e63422.
    • (2013) PLoS ONE , vol.8
    • Vollmers, J.1    Voget, S.2    Dietrich, S.3    Gollnow, K.4    Smits, M.5    Meyer, K.6
  • 78
    • 33750371632 scopus 로고    scopus 로고
    • Environmental biology of the marine Roseobacter lineage
    • Wagner-Döbler, I., and Biebl, H. (2006) Environmental biology of the marine Roseobacter lineage. Annu Rev Microbiol 60: 255–280.
    • (2006) Annu Rev Microbiol , vol.60 , pp. 255-280
    • Wagner-Döbler, I.1    Biebl, H.2
  • 79
    • 73449108737 scopus 로고    scopus 로고
    • The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea
    • Wagner-Döbler, I., Ballhausen, B., Berger, M., Brinkhoff, T., Buchholz, I., Bunk, B., et al. (2010) The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. ISME J 4: 61–77.
    • (2010) ISME J , vol.4 , pp. 61-77
    • Wagner-Döbler, I.1    Ballhausen, B.2    Berger, M.3    Brinkhoff, T.4    Buchholz, I.5    Bunk, B.6
  • 80
    • 84893647984 scopus 로고    scopus 로고
    • The CtrA phosphorelay integrates differentiation and communication in the marine alphaproteobacterium Dinoroseobacter shibae
    • Wang, H., Ziesche, L., Frank, O., Michael, V., Martin, M., Petersen, J., et al. (2014) The CtrA phosphorelay integrates differentiation and communication in the marine alphaproteobacterium Dinoroseobacter shibae. BMC Genomics 15: 130.
    • (2014) BMC Genomics , vol.15 , pp. 130
    • Wang, H.1    Ziesche, L.2    Frank, O.3    Michael, V.4    Martin, M.5    Petersen, J.6
  • 81
    • 0035753462 scopus 로고    scopus 로고
    • Mechanisms of plasmid stable maintenance with special focus on plasmid addiction systems
    • Zielenkiewicz, U., and Ceglowski, P. (2001) Mechanisms of plasmid stable maintenance with special focus on plasmid addiction systems. Acta Biochim Pol 48: 1003–1023.
    • (2001) Acta Biochim Pol , vol.48 , pp. 1003-1023
    • Zielenkiewicz, U.1    Ceglowski, P.2


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