메뉴 건너뛰기




Volumn 7, Issue JUL, 2017, Pages

Molecular characterization of the human stomach microbiota in Gastric Cancer Patients

Author keywords

16S rRNA; gastric cancer; Helicobacter pylori; KEGG modules; microbiome

Indexed keywords

RNA 16S;

EID: 85027562611     PISSN: None     EISSN: 22352988     Source Type: Journal    
DOI: 10.3389/fcimb.2017.00302     Document Type: Article
Times cited : (122)

References (41)
  • 1
    • 84874612821 scopus 로고    scopus 로고
    • The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters
    • Aagaard, K., Petrosino, J., Keitel, W., Watson, M., Katancik, J., Garcia, N., et al. (2013). The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters. FASEB J. 27, 1012–1022. doi: 10.1096/fj.12-220806
    • (2013) FASEB J. , vol.27 , pp. 1012-1022
    • Aagaard, K.1    Petrosino, J.2    Keitel, W.3    Watson, M.4    Katancik, J.5    Garcia, N.6
  • 2
    • 84894729136 scopus 로고    scopus 로고
    • Stomach microbiota composition varies between patients with non-atrophic gastritis and patients with intestinal type of gastric cancer
    • Aviles-Jimenez, F., Vazquez-Jimenez, F., Medrano-Guzman, R., Mantilla, A., and Torres, J. (2014). Stomach microbiota composition varies between patients with non-atrophic gastritis and patients with intestinal type of gastric cancer. Sci. Rep. 4:4202. doi: 10.1038/srep04202
    • (2014) Sci. Rep. , vol.4
    • Aviles-Jimenez, F.1    Vazquez-Jimenez, F.2    Medrano-Guzman, R.3    Mantilla, A.4    Torres, J.5
  • 4
    • 84952644993 scopus 로고    scopus 로고
    • Helicobacter pylori eradication for prevention of metachronous recurrence after endoscopic resection of early gastric cancer
    • Bang, C. S., Baik, G. H., Shin, I. S., Kim, J. B., Suk, K. T., Yoon, J. H., et al. (2015). Helicobacter pylori eradication for prevention of metachronous recurrence after endoscopic resection of early gastric cancer. J. Korean Med. Sci. 30, 749–756. doi: 10.3346/jkms.2015.30.6.749
    • (2015) J. Korean Med. Sci. , vol.30 , pp. 749-756
    • Bang, C.S.1    Baik, G.H.2    Shin, I.S.3    Kim, J.B.4    Suk, K.T.5    Yoon, J.H.6
  • 6
    • 85047691456 scopus 로고    scopus 로고
    • Helicobacter pylori persistence: biology and disease
    • Blaser, M., and Atherton, J. (2004). Helicobacter pylori persistence: biology and disease. J. Clin. Invest. 113, 321–333. doi: 10.1172/JCI20925
    • (2004) J. Clin. Invest. , vol.113 , pp. 321-333
    • Blaser, M.1    Atherton, J.2
  • 7
    • 84936941938 scopus 로고    scopus 로고
    • Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment
    • Burns, M. B., Lynch, J., Starr, T. K., Knights, D., and Blekhman, R. (2015). Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment. Genome Med. 7:55. doi: 10.1186/s13073-015-0177-8
    • (2015) Genome Med. , vol.7 , pp. 55
    • Burns, M.B.1    Lynch, J.2    Starr, T.K.3    Knights, D.4    Blekhman, R.5
  • 9
    • 85018483702 scopus 로고    scopus 로고
    • Stomach cancer,” in World Cancer Report
    • B. Steward and C. P. Wild(Lyon
    • Carneiro, F. (2014). “Stomach cancer,” in World Cancer Report, eds B. Steward and C. P. Wild (Lyon: International Agency for Research on Cancer), 383–391.
    • (2014) International Agency for Research on Cancer , pp. 383-391
    • Carneiro, F.1
  • 10
    • 79955782286 scopus 로고    scopus 로고
    • Helicobacter pylori infection and gastric cardia cancer: systematic review and meta-analysis
    • Cavaleiro-Pinto, M., Peleteiro, B., Lunet, N., and Barros, H. (2011). Helicobacter pylori infection and gastric cardia cancer: systematic review and meta-analysis. Cancer Causes Control 22, 375–387. doi: 10.1007/s10552-010-9707-2
    • (2011) Cancer Causes Control , vol.22 , pp. 375-387
    • Cavaleiro-Pinto, M.1    Peleteiro, B.2    Lunet, N.3    Barros, H.4
  • 11
    • 66049086681 scopus 로고    scopus 로고
    • Therapeutic outcomes in 1000 cases of endoscopic submucosal dissection for early gastric neoplasms: korean ESD Study Group multicenter study
    • Chung, I. K., Lee, J. H., Lee, S. H., Kim, S. J., Cho, J. Y., Cho, W. Y., et al. (2009). Therapeutic outcomes in 1000 cases of endoscopic submucosal dissection for early gastric neoplasms: korean ESD Study Group multicenter study. Gastrointest. Endosc. 69, 1228–1235. doi: 10.1016/j.gie.2008.09.027
    • (2009) Gastrointest. Endosc. , vol.69 , pp. 1228-1235
    • Chung, I.K.1    Lee, J.H.2    Lee, S.H.3    Kim, S.J.4    Cho, J.Y.5    Cho, W.Y.6
  • 12
    • 84877056233 scopus 로고    scopus 로고
    • Gastric cancer: overview
    • Correa, P. (2013). Gastric cancer: overview. Gastroenterol. Clin. North Am. 42, 211–217. doi: 10.1016/j.gtc.2013.01.002
    • (2013) Gastroenterol. Clin. North Am. , vol.42 , pp. 211-217
    • Correa, P.1
  • 13
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069–5072. doi: 10.1128/AEM.03006-05
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3    Rojas, M.4    Brodie, E.L.5    Keller, K.6
  • 14
    • 65649150743 scopus 로고    scopus 로고
    • Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls
    • Pt 4
    • Dicksved, J., Lindberg, M., Rosenquist, M., Enroth, H., Jansson, J. K., and Engstrand, L. (2009). Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls. J. Med. Microbiol. 58(Pt 4), 509–516. doi: 10.1099/jmm.0.007302-0
    • (2009) J. Med. Microbiol. , vol.58 , pp. 509-516
    • Dicksved, J.1    Lindberg, M.2    Rosenquist, M.3    Enroth, H.4    Jansson, J.K.5    Engstrand, L.6
  • 15
    • 84925450745 scopus 로고    scopus 로고
    • Differences in gastric mucosal microbiota profiling in patients with chronic gastritis, intestinal metaplasia, and gastric cancer using pyrosequencing methods
    • Eun, C. S., Kim, B. K., Han, D. S., Kim, S. Y., Kim, K. M., Choi, B. Y., et al. (2014). Differences in gastric mucosal microbiota profiling in patients with chronic gastritis, intestinal metaplasia, and gastric cancer using pyrosequencing methods. Helicobacter 19, 407–416. doi: 10.1111/hel.12145
    • (2014) Helicobacter , vol.19 , pp. 407-416
    • Eun, C.S.1    Kim, B.K.2    Han, D.S.3    Kim, S.Y.4    Kim, K.M.5    Choi, B.Y.6
  • 16
    • 84917735497 scopus 로고    scopus 로고
    • An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
    • Fadrosh, D. W., Ma, B., Gajer, P., Sengamalay, N., Ott, S., Brotman, R. M., et al. (2014). An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform. Microbiome 2:6. doi: 10.1186/2049-2618-2-6
    • (2014) Microbiome , vol.2 , pp. 6
    • Fadrosh, D.W.1    Ma, B.2    Gajer, P.3    Sengamalay, N.4    Ott, S.5    Brotman, R.M.6
  • 17
    • 34047251829 scopus 로고    scopus 로고
    • Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges
    • Faith, D. P., and Baker, A. M. (2006). Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges. Evol. Bioinform. Online 2, 121–128. doi: 10.4137/ebo.s0
    • (2006) Evol. Bioinform. Online , vol.2 , pp. 121-128
    • Faith, D.P.1    Baker, A.M.2
  • 18
    • 84892961071 scopus 로고    scopus 로고
    • GLOBOCAN 2012 v1.0, Cancer Incidence and Mortality Worldwide
    • IARC CancerBase No. 11 [Online]. Lyon: International Agency for Research on Cancer; Accessed 2013
    • Ferlay, J. S. I., Ervik, M., Dikshit, R., Eser, S., Mathers, C., Rebelo, M., et al. (2013). GLOBOCAN 2012 v1.0, Cancer Incidence and Mortality Worldwide: IARC CancerBase No. 11 [Online]. Lyon: International Agency for Research on Cancer. Available online at: http://globocan.iarc.fr/ (Accessed 2013).
    • (2013)
    • Ferlay, J.S.I.1    Ervik, M.2    Dikshit, R.3    Eser, S.4    Mathers, C.5    Rebelo, M.6
  • 19
    • 84871376007 scopus 로고    scopus 로고
    • Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study
    • Flores, R., Shi, J., Fuhrman, B., Xu, X., Veenstra, T. D., Gail, M. H., et al. (2012). Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study. J. Transl. Med. 10:253. doi: 10.1186/1479-5876-10-253
    • (2012) J. Transl. Med. , vol.10
    • Flores, R.1    Shi, J.2    Fuhrman, B.3    Xu, X.4    Veenstra, T.D.5    Gail, M.H.6
  • 20
    • 48149107365 scopus 로고    scopus 로고
    • Effect of eradication of Helicobacter pylori on incidence of metachronous gastric carcinoma after endoscopic resection of early gastric cancer: an open-label, randomised controlled trial
    • Fukase, K., Kato, M., Kikuchi, S., Inoue, K., Uemura, N., Okamoto, S., et al. (2008). Effect of eradication of Helicobacter pylori on incidence of metachronous gastric carcinoma after endoscopic resection of early gastric cancer: an open-label, randomised controlled trial. Lancet 372, 392–397. doi: 10.1016/S.0140-6736(08)61159-9
    • (2008) Lancet , vol.372 , pp. 392-397
    • Fukase, K.1    Kato, M.2    Kikuchi, S.3    Inoue, K.4    Uemura, N.5    Okamoto, S.6
  • 21
    • 41349117172 scopus 로고    scopus 로고
    • Helicobacter pylori induces an antimicrobial response in rhesus Macaques in a cag pathogenicity island-dependent manner
    • Hornsby, M. J., Huff, J. L., Kays, R. J., Canfield, D. R., Bevins, C. L., and Solnick, J. V. (2008). Helicobacter pylori induces an antimicrobial response in rhesus Macaques in a cag pathogenicity island-dependent manner. Gastroenterology 134, 1049–1057. doi: 10.1053/j.gastro.2008.01.018
    • (2008) Gastroenterology , vol.134 , pp. 1049-1057
    • Hornsby, M.J.1    Huff, J.L.2    Kays, R.J.3    Canfield, D.R.4    Bevins, C.L.5    Solnick, J.V.6
  • 22
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Human Microbiome Project Consortium (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207–214. doi: 10.1038/nature11234
    • (2012) Nature , vol.486 , pp. 207-214
  • 23
    • 61649092091 scopus 로고    scopus 로고
    • Endoscopic submucosal dissection for early gastric cancer: a large-scale feasibility study
    • Isomoto, H., Shikuwa, S., Yamaguchi, N., Fukuda, E., Ikeda, K., Nishiyama, H., et al. (2009). Endoscopic submucosal dissection for early gastric cancer: a large-scale feasibility study. Gut 58, 331–336. doi: 10.1136/gut.2008.165381
    • (2009) Gut , vol.58 , pp. 331-336
    • Isomoto, H.1    Shikuwa, S.2    Yamaguchi, N.3    Fukuda, E.4    Ikeda, K.5    Nishiyama, H.6
  • 24
    • 33846235153 scopus 로고    scopus 로고
    • Helicobacter pylori and oesophageal and gastric cancers in a prospective study in China
    • Kamangar, F., Qiao, Y. L., Blaser, M. J., Sun, X. D., Katki, H., Fan, J. H., et al. (2007). Helicobacter pylori and oesophageal and gastric cancers in a prospective study in China. Br. J. Cancer 96, 172–176. doi: 10.1038/sj.bjc.6603517
    • (2007) Br. J. Cancer , vol.96 , pp. 172-176
    • Kamangar, F.1    Qiao, Y.L.2    Blaser, M.J.3    Sun, X.D.4    Katki, H.5    Fan, J.H.6
  • 25
    • 84891760956 scopus 로고    scopus 로고
    • Data, information, knowledge and principle: back to metabolism in KEGG
    • Kanehisa, M., Goto, S., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M. (2014). Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42, D199–D205. doi: 10.1093/nar/gkt1076
    • (2014) Nucleic Acids Res. , vol.42 , pp. D199-D205
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Kawashima, M.4    Furumichi, M.5    Tanabe, M.6
  • 26
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    • Langille, M. G. I., Zaneveld, J., Caporaso, J. G., McDonald, D., Knights, D., Reyes, J. A., et al. (2013). Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31, 814–821. doi: 10.1038/nbt.2676
    • (2013) Nat. Biotechnol. , vol.31 , pp. 814-821
    • Langille, M.G.I.1    Zaneveld, J.2    Caporaso, J.G.3    McDonald, D.4    Knights, D.5    Reyes, J.A.6
  • 27
    • 71049159648 scopus 로고    scopus 로고
    • Bacterial microbiota profiling in gastritis without Helicobacter pylori infection or non-steroidal anti-inflammatory drug use
    • Li, X. X., Wong, G. L. H., To, K. F., Wong, V. W. S., Lai, L. H., Chow, D. K. L., et al. (2009). Bacterial microbiota profiling in gastritis without Helicobacter pylori infection or non-steroidal anti-inflammatory drug use. PLoS ONE 4:e7985. doi: 10.1371/journal.pone.0007985
    • (2009) PLoS ONE , vol.4
    • Li, X.X.1    Wong, G.L.H.2    To, K.F.3    Wong, V.W.S.4    Lai, L.H.5    Chow, D.K.L.6
  • 28
    • 78751575501 scopus 로고    scopus 로고
    • UniFrac: an effective distance metric for microbial community comparison
    • Lozupone, C., Lladser, M. E., Knights, D., Stombaugh, J., and Knight, R. (2011). UniFrac: an effective distance metric for microbial community comparison. ISME J. 5, 169–172. doi: 10.1038/ismej.2010.133
    • (2011) ISME J. , vol.5 , pp. 169-172
    • Lozupone, C.1    Lladser, M.E.2    Knights, D.3    Stombaugh, J.4    Knight, R.5
  • 30
    • 79953029636 scopus 로고    scopus 로고
    • Structure of the human gastric bacterial community in relation to Helicobacter pylori status
    • Maldonado-Contreras, A., Goldfarb, K. C., Godoy-Vitorino, F., Karaoz, U., Contreras, M., Blaser, M. J., et al. (2011). Structure of the human gastric bacterial community in relation to Helicobacter pylori status. ISME J. 5, 574–579. doi: 10.1038/ismej.2010.149
    • (2011) ISME J. , vol.5 , pp. 574-579
    • Maldonado-Contreras, A.1    Goldfarb, K.C.2    Godoy-Vitorino, F.3    Karaoz, U.4    Contreras, M.5    Blaser, M.J.6
  • 31
    • 0343312873 scopus 로고    scopus 로고
    • The origin of cecropins; implications from synthetic peptides derived from ribosomal protein L1
    • Putsep, K., Normark, S., and Boman, H. G. (1999). The origin of cecropins; implications from synthetic peptides derived from ribosomal protein L1. FEBS Lett. 451, 249–252. doi: 10.1016/S0014-5793(99)00582-7
    • (1999) FEBS Lett. , vol.451 , pp. 249-252
    • Putsep, K.1    Normark, S.2    Boman, H.G.3
  • 32
    • 0031178951 scopus 로고    scopus 로고
    • The mathematical theory of communication. 1963
    • Shannon, C. E. (1997). The mathematical theory of communication. 1963. MD. Comput. 14, 306–317.
    • (1997) MD. Comput. , vol.14 , pp. 306-317
    • Shannon, C.E.1
  • 33
    • 84888422522 scopus 로고    scopus 로고
    • The role of the gastrointestinal microbiome in Helicobacter pylori pathogenesis
    • Sheh, A., and Fox, J. G. (2013). The role of the gastrointestinal microbiome in Helicobacter pylori pathogenesis. Gut Microbes 4, 505–531. doi: 10.4161/gmic.26205
    • (2013) Gut Microbes , vol.4 , pp. 505-531
    • Sheh, A.1    Fox, J.G.2
  • 34
    • 84865119876 scopus 로고    scopus 로고
    • How Helicobacter pylori infection controls gastric acid secretion
    • Smolka, A. J., and Backert, S. (2012). How Helicobacter pylori infection controls gastric acid secretion. J. Gastroenterol. 47, 609–618. doi: 10.1007/s00535-012-0592-1
    • (2012) J. Gastroenterol. , vol.47 , pp. 609-618
    • Smolka, A.J.1    Backert, S.2
  • 35
    • 84957574737 scopus 로고    scopus 로고
    • Gastric microbiota and predicted gene functions are altered after subtotal gastrectomy in patients with gastric cancer
    • Tseng, C. H., Lin, J. T., Ho, H. J., Lai, Z. L., Wang, C. B., Tang, S. L., et al. (2016). Gastric microbiota and predicted gene functions are altered after subtotal gastrectomy in patients with gastric cancer. Sci. Rep. 6:20701. doi: 10.1038/srep20701
    • (2016) Sci. Rep. , vol.6
    • Tseng, C.H.1    Lin, J.T.2    Ho, H.J.3    Lai, Z.L.4    Wang, C.B.5    Tang, S.L.6
  • 36
    • 84957840247 scopus 로고    scopus 로고
    • Bacterial overgrowth and diversification of microbiota in gastric cancer
    • Wang, L., Zhou, J., Xin, Y., Geng, C., Tian, Z., Yu, X., et al. (2015). Bacterial overgrowth and diversification of microbiota in gastric cancer. Eur. J. Gastroenterol. Hepatol. 28, 261–266. doi: 10.1097/MEG.0000000000000542
    • (2015) Eur. J. Gastroenterol. Hepatol. , vol.28 , pp. 261-266
    • Wang, L.1    Zhou, J.2    Xin, Y.3    Geng, C.4    Tian, Z.5    Yu, X.6
  • 37
    • 84957840247 scopus 로고    scopus 로고
    • Bacterial overgrowth and diversification of microbiota in gastric cancer
    • Wang, L. L., Zhou, J. H., Xin, Y. N., Geng, C. X., Tian, Z. B., Yu, X. J., et al. (2016). Bacterial overgrowth and diversification of microbiota in gastric cancer. Eur. J. Gastroenterol. Hepatol. 28, 261–266. doi: 10.1097/MEG.0000000000000542
    • (2016) Eur. J. Gastroenterol. Hepatol. , vol.28 , pp. 261-266
    • Wang, L.L.1    Zhou, J.H.2    Xin, Y.N.3    Geng, C.X.4    Tian, Z.B.5    Yu, X.J.6
  • 38
    • 84991261023 scopus 로고    scopus 로고
    • The role of the microbiome in gastrointestinal cancer
    • Wroblewski, L. E., Peek, R. M., and Coburn, L. A. (2016). The role of the microbiome in gastrointestinal cancer. Gastroenterol. Clin. North Am. 45, 543–556. doi: 10.1016/j.gtc.2016.04.010
    • (2016) Gastroenterol. Clin. North Am. , vol.45 , pp. 543-556
    • Wroblewski, L.E.1    Peek, R.M.2    Coburn, L.A.3
  • 39
    • 84941247954 scopus 로고    scopus 로고
    • Nested PCR biases in interpreting microbial community structure in 16S rRNA gene sequence datasets
    • Yu, G., Fadrosh, D., Goedert, J. J., Ravel, J., and Goldstein, A. M. (2015). Nested PCR biases in interpreting microbial community structure in 16S rRNA gene sequence datasets. PLoS ONE 10:e0132253. doi: 10.1371/journal.pone.0132253
    • (2015) PLoS ONE , vol.10 , pp. e0132253
    • Yu, G.1    Fadrosh, D.2    Goedert, J.J.3    Ravel, J.4    Goldstein, A.M.5
  • 40
    • 85017097201 scopus 로고    scopus 로고
    • Gastric microbiota features associated with cancer risk factors and clinical outcomes: a pilot study in gastric cardia cancer patients from Shanxi, China
    • Yu, G., Hu, N., Wang, L., Wang, C., Han, X. Y., Humphry, M., et al. (2017). Gastric microbiota features associated with cancer risk factors and clinical outcomes: a pilot study in gastric cardia cancer patients from Shanxi, China. Int. J. Cancer 141, 45–51. doi: 10.1002/ijc.30700
    • (2017) Int. J. Cancer , vol.141 , pp. 45-51
    • Yu, G.1    Hu, N.2    Wang, L.3    Wang, C.4    Han, X.Y.5    Humphry, M.6
  • 41
    • 84948754958 scopus 로고    scopus 로고
    • Identification of low abundance microbiome in clinical samples using whole genome sequencing
    • Zhang, C., Cleveland, K., Schnoll-Sussman, F., McClure, B., Bigg, M., Thakkar, P., et al. (2015). Identification of low abundance microbiome in clinical samples using whole genome sequencing. Genome Biol. 16, 265. doi: 10.1186/s13059-015-0821-z
    • (2015) Genome Biol. , vol.16 , pp. 265
    • Zhang, C.1    Cleveland, K.2    Schnoll-Sussman, F.3    McClure, B.4    Bigg, M.5    Thakkar, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.