-
1
-
-
0035843993
-
Commensal host-bacterial relationships in the gut
-
Hooper LV, Gordon JI (2001) Commensal host-bacterial relationships in the gut. Science 292: 1115-1118.
-
(2001)
Science
, vol.292
, pp. 1115-1118
-
-
Hooper, L.V.1
Gordon, J.I.2
-
2
-
-
34547129847
-
Development of the Human Infant Intestinal Microbiota
-
Palmer C, Bik EM, Digiulio DB, Relman DA, Brown PO (2007) Development of the Human Infant Intestinal Microbiota. PLoS Biol 5: e177.
-
(2007)
PLoS Biol
, vol.5
-
-
Palmer, C.1
Bik, E.M.2
Digiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
3
-
-
8144226856
-
The gut microbiota as an environmental factor that regulates fat storage
-
Backhed F, Ding H, Wang T, Hooper LV, Koh GY, et al. (2004) The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci U S A 101: 15718-15723.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 15718-15723
-
-
Backhed, F.1
Ding, H.2
Wang, T.3
Hooper, L.V.4
Koh, G.Y.5
-
4
-
-
0142026205
-
Inaugural Article: Honor thy symbionts
-
Xu J, Gordon JI (2003) Inaugural Article: Honor thy symbionts. Proc Natl Acad Sci U S A 100: 10452-10459.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 10452-10459
-
-
Xu, J.1
Gordon, J.I.2
-
5
-
-
0017341656
-
Microbial ecology of the gastrointestinal tract
-
Savage DC (1977) Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol 31: 107-133.
-
(1977)
Annu Rev Microbiol
, vol.31
, pp. 107-133
-
-
Savage, D.C.1
-
6
-
-
3242664636
-
Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis
-
Rakoff-Nahoum S, Paglino J, Eslami-Varzaneh F, Edberg S, Medzhitov R (2004) Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis. Cell 118: 229-241.
-
(2004)
Cell
, vol.118
, pp. 229-241
-
-
Rakoff-Nahoum, S.1
Paglino, J.2
Eslami-Varzaneh, F.3
Edberg, S.4
Medzhitov, R.5
-
7
-
-
7944231342
-
Does the microbiota regulate immune responses outside the gut?
-
Noverr MC, Huffnagle GB (2004) Does the microbiota regulate immune responses outside the gut? Trends Microbiol 12: 562-568.
-
(2004)
Trends Microbiol
, vol.12
, pp. 562-568
-
-
Noverr, M.C.1
Huffnagle, G.B.2
-
9
-
-
0036061028
-
Gastrointestinal microflora studies in late-onset autism
-
Finegold SM, Molitoris D, Song Y, Liu C, Vaisanen ML, et al. (2002) Gastrointestinal microflora studies in late-onset autism. Clin Infect Dis 35: S6-S16.
-
(2002)
Clin Infect Dis
, vol.35
-
-
Finegold, S.M.1
Molitoris, D.2
Song, Y.3
Liu, C.4
Vaisanen, M.L.5
-
10
-
-
0036919642
-
The pathogenesis of Crohn's disease in the 21st century
-
Hume G, Radford-Smith GL (2002) The pathogenesis of Crohn's disease in the 21st century. Pathology 34: 561-567.
-
(2002)
Pathology
, vol.34
, pp. 561-567
-
-
Hume, G.1
Radford-Smith, G.L.2
-
11
-
-
12344253203
-
Diet, anaerobic bacterial metabolism, and colon cancer: A review of the literature
-
McGarr SE, Ridlon JM, Hylemon PB (2005) Diet, anaerobic bacterial metabolism, and colon cancer: a review of the literature. J Clin Gastroenterol 39: 98-109.
-
(2005)
J Clin Gastroenterol
, vol.39
, pp. 98-109
-
-
McGarr, S.E.1
Ridlon, J.M.2
Hylemon, P.B.3
-
12
-
-
0016167941
-
Human fecal flora: The normal flora of 20 Japanese-Hawaiians
-
Moore WE, Holdeman LV (1974) Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl Microbiol 27: 961-979.
-
(1974)
Appl Microbiol
, vol.27
, pp. 961-979
-
-
Moore, W.E.1
Holdeman, L.V.2
-
13
-
-
0033456272
-
Bacterial diversity within the human subgingival crevice
-
Kroes I, Lepp PW, Relman DA (1999) Bacterial diversity within the human subgingival crevice. Proc Natl Acad Sci U S A 96: 14547-14552.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 14547-14552
-
-
Kroes, I.1
Lepp, P.W.2
Relman, D.A.3
-
14
-
-
0034992657
-
Bacterial diversity in human subgingival plaque
-
Paster BJ, Boches SK, Galvin JL, Ericson RE, Lau CN, et al. (2001) Bacterial diversity in human subgingival plaque. J Bacteriol 183: 3770-3783.
-
(2001)
J Bacteriol
, vol.183
, pp. 3770-3783
-
-
Paster, B.J.1
Boches, S.K.2
Galvin, J.L.3
Ericson, R.E.4
Lau, C.N.5
-
15
-
-
1642488364
-
Bacterial biota in the human distal esophagus
-
Pei Z, Bini EJ, Yang L, Zhou M, Francois F, et al. (2004) Bacterial biota in the human distal esophagus. Proc Natl Acad Sci U S A 101: 4250-4255.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 4250-4255
-
-
Pei, Z.1
Bini, E.J.2
Yang, L.3
Zhou, M.4
Francois, F.5
-
16
-
-
31444449652
-
Molecular analysis of the bacterial microbiota in the human stomach
-
Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, et al. (2006) Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci U S A 103: 732-737.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 732-737
-
-
Bik, E.M.1
Eckburg, P.B.2
Gill, S.R.3
Nelson, K.E.4
Purdom, E.A.5
-
17
-
-
27644574002
-
Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
-
Hayashi H, Takahashi R, Nishi T, Sakamoto M, Benno Y (2005) Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J Med Microbiol 54: 1093-1101.
-
(2005)
J Med Microbiol
, vol.54
, pp. 1093-1101
-
-
Hayashi, H.1
Takahashi, R.2
Nishi, T.3
Sakamoto, M.4
Benno, Y.5
-
18
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Backhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI (2005) Host-bacterial mutualism in the human intestine. Science 307: 1915-1920.
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
19
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley RE, Peterson DA, Gordon JI (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848.
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
20
-
-
27644443333
-
Molecular identification of bacteria associated with bacterial vaginosis
-
Fredricks DN, Fiedler TL, Marrazzo JM (2005) Molecular identification of bacteria associated with bacterial vaginosis. N Engl J Med 353: 1899-1911.
-
(2005)
N Engl J Med
, vol.353
, pp. 1899-1911
-
-
Fredricks, D.N.1
Fiedler, T.L.2
Marrazzo, J.M.3
-
21
-
-
1942469363
-
Methanogenic Archaea and human periodontal disease
-
Lepp PW, Brinig MM, Ouverney CC, Palm K, Armitage GC, et al. (2004) Methanogenic Archaea and human periodontal disease. Proc Natl Acad SciUS A 101: 6176-6181.
-
(2004)
Proc Natl Acad SciUS A
, vol.101
, pp. 6176-6181
-
-
Lepp, P.W.1
Brinig, M.M.2
Ouverney, C.C.3
Palm, K.4
Armitage, G.C.5
-
22
-
-
23344442120
-
Obesity alters gut microbial ecology
-
Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, et al. (2005) Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A 102: 11070-11075.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
-
23
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
-
24
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley RE, Turnbaugh PJ, Klein S, Gordon JI (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444: 1022-1023.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
25
-
-
0021259505
-
Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration
-
Marshall BJ, Warren JR (1984) Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet 1: 1311-1315.
-
(1984)
Lancet
, vol.1
, pp. 1311-1315
-
-
Marshall, B.J.1
Warren, J.R.2
-
26
-
-
0031876199
-
Identification of Helicobacter in gastric biopsies by PCR based on 16S rDNA sequences: A matter of little significance for the prediction of H. pylori-associated gastritis?
-
Tiveljung A, Borch K, Jonasson J, Mardh S, Petersson F, et al. (1998) Identification of Helicobacter in gastric biopsies by PCR based on 16S rDNA sequences: a matter of little significance for the prediction of H. pylori-associated gastritis? J Med Microbiol 47: 695-704.
-
(1998)
J Med Microbiol
, vol.47
, pp. 695-704
-
-
Tiveljung, A.1
Borch, K.2
Jonasson, J.3
Mardh, S.4
Petersson, F.5
-
27
-
-
0028354730
-
A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori
-
Eckloff BW, Podzorski RP, Kline BC, Cockerill FR, 3rd (1994) A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori. Int J Syst Bacteriol 44: 320-323.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 320-323
-
-
Eckloff, B.W.1
Podzorski, R.P.2
Kline, B.C.3
Cockerill 3rd, F.R.4
-
28
-
-
0033054672
-
Characterization of a culturable "Gastrospirillum hominis" (Helicobacter heilmannii) strain isolated from human gastric mucosa
-
Andersen LP, Boye K, Blom J, Holck S, Norgaard A, et al. (1999) Characterization of a culturable "Gastrospirillum hominis" (Helicobacter heilmannii) strain isolated from human gastric mucosa. J Clin Microbiol 37: 1069-1076.
-
(1999)
J Clin Microbiol
, vol.37
, pp. 1069-1076
-
-
Andersen, L.P.1
Boye, K.2
Blom, J.3
Holck, S.4
Norgaard, A.5
-
29
-
-
0022582418
-
Bacterial flora in gastric juice taken at endoscopy in 93 normal subjects]
-
Guerre J, Vedel G, Gaudric M, Paul G, Cornuau J (1986) [Bacterial flora in gastric juice taken at endoscopy in 93 normal subjects]. Pathol Biol (Paris) 34: 57-60.
-
(1986)
Pathol Biol (Paris)
, vol.34
, pp. 57-60
-
-
Guerre, J.1
Vedel, G.2
Gaudric, M.3
Paul, G.4
Cornuau, J.5
-
30
-
-
0033857550
-
Profiling of bacterial flora in gastric biopsies from patients with Helicobacter pylori-associated gastritis and histologically normal control individuals by temperature gradient gel electrophoresis and 16S rDNA sequence analysis
-
Monstein HJ, Tiveljung A, Kraft CH, Borch K, Jonasson J (2000) Profiling of bacterial flora in gastric biopsies from patients with Helicobacter pylori-associated gastritis and histologically normal control individuals by temperature gradient gel electrophoresis and 16S rDNA sequence analysis. J Med Microbiol 49: 817-822.
-
(2000)
J Med Microbiol
, vol.49
, pp. 817-822
-
-
Monstein, H.J.1
Tiveljung, A.2
Kraft, C.H.3
Borch, K.4
Jonasson, J.5
-
31
-
-
0033799121
-
-
Kimura K (2000) Gastritis and gastric cancer. Asia. Gastroenterol Clin North Am 29: 609-621.
-
Kimura K (2000) Gastritis and gastric cancer. Asia. Gastroenterol Clin North Am 29: 609-621.
-
-
-
-
34
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen L, Huse S, Sogin ML, Relman DA (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6: e280.
-
(2008)
PLoS Biol
, vol.6
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
35
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
-
Edwards U, Rogall T, Blocker H, Emde M, Bottger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17: 7843-7853.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
36
-
-
0025045135
-
Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction
-
Wilson KH, Blitchington RB, Greene RC (1990) Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J Clin Microbiol 28: 1942-1946.
-
(1990)
J Clin Microbiol
, vol.28
, pp. 1942-1946
-
-
Wilson, K.H.1
Blitchington, R.B.2
Greene, R.C.3
-
37
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber T, Faulkner G, Hugenholtz P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
38
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
39
-
-
0028028182
-
A Place for DNA-DNA Reassociation and 16s Ribosomal-Rna Sequence-Analysis in the Present Species Definition in Bacteriology
-
Stackebrandt E, Goebel BM (1994) A Place for DNA-DNA Reassociation and 16s Ribosomal-Rna Sequence-Analysis in the Present Species Definition in Bacteriology. International Journal of Systematic Bacteriology 44: 846-849.
-
(1994)
International Journal of Systematic Bacteriology
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
40
-
-
0000803388
-
The population frequencies of species and estimation of population parameters
-
Good IJ (1953) The population frequencies of species and estimation of population parameters. Biometrika 40: 237-264.
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
|