Identification of a D-arabinose-5-phosphate isomerase in the Gram-positive Clostridium tetani

Journal of Bacteriology

Volumn 199, Issue 17, 2017, Pages

  Cech, David L ^a   Markin, Katherine ^a   Woodard, Ronald W ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

Aldose ketose isomerase; Arabinose 5 phosphate; Clostridium tetani; Isomerase; Kinetics; Ribulose 5 phosphate

Indexed keywords

ARABINOSE 5-PHOSPHATE; ISOMERASE; PENTOSE PHOSPHATE; RECOMBINANT PROTEIN; RIBOSE PHOSPHATE; RIBOSE-5-PHOSPHATE;

CHEMISTRY; CLOSTRIDIUM TETANI; CYTOSOL; ENZYMOLOGY; ESCHERICHIA COLI; GENE DELETION; GENE EXPRESSION; GENETIC COMPLEMENTATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM;

ALDOSE-KETOSE ISOMERASES; CLOSTRIDIUM TETANI; CYTOSOL; ESCHERICHIA COLI; GENE DELETION; GENE EXPRESSION; GENETIC COMPLEMENTATION TEST; PENTOSEPHOSPHATES; RECOMBINANT PROTEINS; RIBOSEMONOPHOSPHATES;

EID: 85027353297     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00246-17     Document Type: Article

References (28)

1. Horecker BL. 2002. The pentose phosphate pathway. J Biol Chem 277: 47965-47971. https://doi.org/10.1074/jbc. X200007200
2. Royo J, Gímez E, Hueros G. 2000. CMP-KDO synthetase: a plant gene borrowed from Gram-negative eubacteria. Trends Genet 16:432-433. https://doi.org/10.1016/S0168-9525(00)02102-8
3. Cech D, Wang PF, Holler TP, Woodard RW. 2014. Analysis of the arabinose-5-phosphate isomerase of Bacteroides fragilis provides insight into regulation of single-domain arabinose phosphate isomerases. J Bacteriol 196:2861-2868. https://doi.org/10.1128/JB.01735-14
4. Meredith TC, Woodard RW. 2005. Identification of GutQ from Escherichia coli as a D-arabinose 5-phosphate isomerase. J Bacteriol 187:6936-6942. https://doi.org/10.1128/JB.187.20.6936-6942.2005
5. Meredith TC, Woodard RW. 2006. Characterization of Escherichia coli D-arabinose 5-phosphate isomerase encoded by kpsF: implications for group 2 capsule biosynthesis. Biochem J 395:427-432. https://doi.org/10.1042/BJ20051828
6. Snyder JA, Haugen BJ, Buckles EL, Lockatell CV, Johnson DE, Donnenberg MS, Welch RA, Mobley HL. 2004. Transcriptome of uropathogenic Escherichia coli during urinary tract infection. Infect Immun 72: 6373-6381. https://doi.org/10.1128/IAI.72.11.6373-6381.2004
7. Garcia EC, Brumbaugh AR, Mobley HL. 2011. Redundancy and specificity of Escherichia coli iron acquisition systems during urinary tract infection. Infect Immun 79:1225-1235. https://doi.org/10.1128/IAI.01222-10
8. Subashchandrabose S, Mobley HL. 2015. Virulence and fitness determinants of uropathogenic Escherichia coli. Microbiol Spectr 3:UTI-0015-2012
9. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402. https://doi.org/10.1093/nar/25.17.3389
10. Eidels L, Rick PD, Stimler NP, Osborn MJ. 1974. Transport of D-arabinose-5-phosphate and D-sedoheptulose-7-phosphate by the hexose phosphate transport system of Salmonella Typhimurium. J Bacteriol 119: 138-143
11. Mertens N, Remaut E, Fiers W. 1995. Tight transcriptional control mechanism ensures stable high-level expression from T7 promoter-based expression plasmids. Biotechnology (N Y) 13:175-179
12. Sommaruga S, Gioia LD, Tortora P, Polissi A. 2009. Structure prediction and functional analysis of KdsD, an enzyme involved in lipopolysaccharide biosynthesis. Biochem Biophys Res Commun 388:222-227. https://doi.org/10.1016/j.bbrc.2009.07.154
13. Gourlay LJ, Sommaruga S, Nardini M, Sperandeo P, Dehò G, Polissi A, Bolognesi M. 2010. Probing the active site of the sugar isomerase domain from E. coli arabinose-5-phosphate isomerase via X-ray crystallography. Protein Sci 19:2430-2439. https://doi.org/10.1002/pro.525
14. Lengeler J. 1975. Mutations affecting transport of the hexitols D-mannitol, D-glucitol, and galactitol in Escherichia coli K-12: isolation and mapping. J Bacteriol 124:26-38
15. Lengeler J. 1975. Nature and properties of hexitol transport systems in Escherichia coli. J Bacteriol 124:39-47
16. Yamada M, Saier MH, Jr. 1987. Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon. J Biol Chem 262:5455-5463
17. Yamada M, Saier MH, Jr. 1987. Physical and genetic characterization of the glucitol operon in Escherichia coli. J Bacteriol 169:2990-2994. https://doi.org/10.1128/jb.169.7.2990-2994.1987
18. Light SH, Anderson WF. 2014. Arabinose 5-phosphate covalently inhibits transaldolase. J Struct Funct Genomics 15:41-44. https://doi.org/10.1007/s10969-014-9174-1
19. Hamada K, Ago H, Sugahara M, Nodake Y, Kuramitsu S, Miyano M. 2003. Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi). J Biol Chem 278:49183-49190. https://doi.org/10.1074/jbc. M309272200
20. Miller JH. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
21. Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640-6645. https://doi.org/10.1073/pnas.120163297
22. Dische Z, Borenfreund E. 1951. A new spectrophotometric method for the detection and determination of keto sugars and trioses. J Biol Chem 192:583-587
23. Meredith TC, Woodard RW. 2003. Escherichia coli YrbH Is a D-arabinose 5-phosphate isomerase. J Biol Chem 278:32771-32777. https://doi.org/10.1074/jbc. M303661200
24. Mosberg J, Yep A, Meredith T, Smith S, Wang P-F, Holler T, Mobley H, Woodard R. 2011. A unique arabinose 5-phosphate isomerase found within a genomic island associated with the uropathogenicity of Escherichia coli CFT073. J Bacteriol 193:2981-2988. https://doi.org/10.1128/JB.00033-11
25. Wu J, Patel MA, Sundaram AK, Woodard RW. 2004. Functional and biochemical characterization of a recombinant Arabidopsis thaliana 3-deoxy-D-manno-octulosonate 8-phosphate synthase. Biochem J 381: 185-193. https://doi.org/10.1042/BJ20040207
26. Sheflyan GY, Sundaram AK, Taylor WP, Woodard RW. 2000. Substrate ambiguity of 3-deoxy-D-manno-octulosonate 8-phosphate synthase from Neisseria gonorrhoeae revisited. J Bacteriol 182:5005-5008. https://doi.org/10.1128/JB.182.17.5005-5008.2000
27. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680. https://doi.org/10.1093/nar/22.22.4673
28. Tabor S, Richardson CC. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc Natl Acad Sci U S A 82:1074-1078. https://doi.org/10.1073/pnas.82.4.1074