-
1
-
-
84869219279
-
Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: An evolutionary perspective
-
Folkesson, A. et al. Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: An evolutionary perspective. Nat Rev Microbiol 10, 841-51 (2012).
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 841-851
-
-
Folkesson, A.1
-
2
-
-
84555178426
-
Intrinsic and environmental mutagenesis drive diversification and persistence of Pseudomonas aeruginosa in chronic lung infections
-
Rodríguez-Rojas, A., Oliver, A., Blázquez, J. Intrinsic and environmental mutagenesis drive diversification and persistence of Pseudomonas aeruginosa in chronic lung infections. J Infect Dis. 05, 121-7 (2012).
-
(2012)
J Infect Dis
, vol.5
, pp. 121-127
-
-
Rodríguez-Rojas, A.1
Oliver, A.2
Blázquez, J.3
-
3
-
-
78549263685
-
Adaptation of Pseudomonas aeruginosa during persistence in the cystic fibrosis lung
-
Hogardt, M., Heesemann, J. Adaptation of Pseudomonas aeruginosa during persistence in the cystic fibrosis lung. Int J Med Microbiol. 300, 557-62 (2010).
-
(2010)
Int J Med Microbiol.
, vol.300
, pp. 557-562
-
-
Hogardt, M.1
Heesemann, J.2
-
4
-
-
79960923273
-
Pseudomonas aeruginosa: All roads lead to resistance
-
Breidenstein, E. B., de la Fuente-Núñez, C., Hancock, R. E. Pseudomonas aeruginosa: All roads lead to resistance. Trends Microbiol. 19, 419-426 (2011).
-
(2011)
Trends Microbiol
, vol.19
, pp. 419-426
-
-
Breidenstein, E.B.1
Dela Fuente-Núñez, C.2
Hancock, R.E.3
-
5
-
-
79958048843
-
Pseudomonas genomes: Diverse and adaptable
-
Silby, M. W., Winstanley, C., Godfrey, S. A., Levy, S. B., Jackson, R. W. Pseudomonas genomes: Diverse and adaptable. FEMS Microbiol. Rev. 35, 652-680 (2011).
-
(2011)
FEMS Microbiol. Rev.
, vol.35
, pp. 652-680
-
-
Silby, M.W.1
Winstanley, C.2
Godfrey, S.A.3
Levy, S.B.4
Jackson, R.W.5
-
6
-
-
84899514356
-
Role of efflux pumps: MexAB-OprM and MexXY(-OprA), AmpC cephalosporinase and OprD porin in non-metallo-β-lactamase producing Pseudomonas aeruginosa isolated from cystic fibrosis and burn patients
-
Aghazadeh, M. et al. Role of efflux pumps: MexAB-OprM and MexXY(-OprA), AmpC cephalosporinase and OprD porin in non-metallo-β-lactamase producing Pseudomonas aeruginosa isolated from cystic fibrosis and burn patients. Infect Genet Evol. 24, 187-92 (2014).
-
(2014)
Infect Genet Evol
, vol.24
, pp. 187-192
-
-
Aghazadeh, M.1
-
7
-
-
19544386997
-
Occurrence of hypermutable Pseudomonas aeruginosa in cystic fibrosis patients is associated with the oxidative stress caused by chronic lung inflammation
-
Ciofu, O., Riis, B., Pressler, T., Poulsen, H. E., Høiby, N. Occurrence of hypermutable Pseudomonas aeruginosa in cystic fibrosis patients is associated with the oxidative stress caused by chronic lung inflammation. Antimicrob Agents Chemother. 49, 2276-82 (2005).
-
(2005)
Antimicrob Agents Chemother.
, vol.49
, pp. 2276-2282
-
-
Ciofu, O.1
Riis, B.2
Pressler, T.3
Poulsen, H.E.4
Høiby, N.5
-
8
-
-
77954729491
-
Mutators in cystic fibrosis chronic lung infection: Prevalence, mechanisms, and consequences for antimicrobial therapy
-
Oliver, A. Mutators in cystic fibrosis chronic lung infection: Prevalence, mechanisms, and consequences for antimicrobial therapy. Int J Med Microbiol. 300, 563-72 (2010).
-
(2010)
Int J Med Microbiol.
, vol.300
, pp. 563-572
-
-
Oliver, A.1
-
9
-
-
57349088170
-
Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutation
-
Mena, A. et al. Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutation. J Bacteriol. 190, 7910-7 (2008).
-
(2008)
J Bacteriol
, vol.190
, pp. 7910-7917
-
-
Mena, A.1
-
10
-
-
0034685940
-
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection
-
Oliver, A., Cantón, R., Campo, P., Baquero, F., Blázquez, J. High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. Science. 288, 1251-4 (2000).
-
(2000)
Science
, vol.288
, pp. 1251-1254
-
-
Oliver, A.1
Cantón, R.2
Campo, P.3
Baquero, F.4
Blázquez, J.5
-
11
-
-
0022576641
-
An epidemic spread of multiresistant Pseudomonas aeruginosa in a cystic fibrosis centre
-
Pedersen, S. S., Koch, C., Hoiby, N., Rosendal, K. An epidemic spread of multiresistant Pseudomonas aeruginosa in a cystic fibrosis centre. J Antimicrob Chemother. 17, 505-516 (1986).
-
(1986)
J Antimicrob Chemother
, vol.17
, pp. 505-516
-
-
Pedersen, S.S.1
Koch, C.2
Hoiby, N.3
Rosendal, K.4
-
12
-
-
0030573808
-
Spread of beta-lactam-resistant Pseudomonas aeruginosa in a cystic fibrosis clinic
-
Cheng, K. et al. Spread of beta-lactam-resistant Pseudomonas aeruginosa in a cystic fibrosis clinic. Lancet. 348, 639-642 (1996).
-
(1996)
Lancet
, vol.348
, pp. 639-642
-
-
Cheng, K.1
-
13
-
-
0037951634
-
Evidence for spread of a clonal strain of Pseudomonas aeruginosa among cystic fibrosis clinics
-
Armstrong, D. et al. Evidence for spread of a clonal strain of Pseudomonas aeruginosa among cystic fibrosis clinics. J Clin Microbiol. 41, 2266-2267 (2003).
-
(2003)
J Clin Microbiol.
, vol.41
, pp. 2266-2267
-
-
Armstrong, D.1
-
14
-
-
84959309866
-
Pseudomonas aeruginosa evolutionary adaptation and diversification in cystic fibrosis chronic lung infections
-
Winstanley, C., O'Brien, S., Brockhurst, M. A. Pseudomonas aeruginosa evolutionary adaptation and diversification in cystic fibrosis chronic lung infections. Trends Microbiol. 24, 327-37 (2016).
-
(2016)
Trends Microbiol.
, vol.24
, pp. 327-337
-
-
Winstanley, C.1
O'Brien, S.2
Brockhurst, M.A.3
-
15
-
-
44449117336
-
Evolution of Pseudomonas aeruginosa pathogenicity: From acute to chronic infections
-
Baquero, F., Nombela, C., Cassell, G. H., Gutiérrez, J. A. (Eds ASM Press
-
Oliver, A., Mena, A., Macià, M. D. Evolution of Pseudomonas aeruginosa pathogenicity: From acute to chronic infections. In: Baquero, F., Nombela, C., Cassell, G. H., Gutiérrez, J. A. (Eds), Evolutionary Biology of Bacterial and Fungal Pathogens, ISBN 978-1-55581-414-4, 433-444, (ASM Press, 2008).
-
(2008)
Evolutionary Biology of Bacterial and Fungal Pathogens
, pp. 433-444
-
-
Oliver, A.1
Mena, A.2
MacIà, M.D.3
-
16
-
-
84881513008
-
Clonal dissemination, emergence of mutator lineages and antibiotic resistance evolution in Pseudomonas aeruginosa cystic fibrosis chronic lung infection
-
López-Causapé, C. et al. Clonal dissemination, emergence of mutator lineages and antibiotic resistance evolution in Pseudomonas aeruginosa cystic fibrosis chronic lung infection. PLoS One. 8, e71001, doi: 10.1371/journal.pone.0071001 (2013).
-
(2013)
PLoS One
, vol.8
, pp. 71001
-
-
López-Causapé, C.1
-
17
-
-
84859982559
-
Emergence of a mutL mutation causing multilocus sequence typing-pulsed-field gel electrophoresis discrepancy among Pseudomonas aeruginosa isolates from a cystic fibrosis patient
-
Garciá-Castillo, M. et al. Emergence of a mutL mutation causing multilocus sequence typing-pulsed-field gel electrophoresis discrepancy among Pseudomonas aeruginosa isolates from a cystic fibrosis patient. J Clin Microbiol. 50, 1777-8 (2012).
-
(2012)
J Clin Microbiol
, vol.50
, pp. 1777-1778
-
-
Garciá-Castillo, M.1
-
18
-
-
78650902004
-
Comparison of three molecular techniques for typing Pseudomonas aeruginosa isolates in sputum samples
-
Kidd, T. J., Grimwood, K., Ramsay, K. A., Rainey, P., Bell, S. C. Comparison of three molecular techniques for typing Pseudomonas aeruginosa isolates in sputum samples. J Clin Microbiol. 49, 263-268 (2011).
-
(2011)
J Clin Microbiol
, vol.49
, pp. 263-268
-
-
Kidd, T.J.1
Grimwood, K.2
Ramsay, K.A.3
Rainey, P.4
Bell, S.C.5
-
19
-
-
84946833974
-
Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium
-
Freschi, L. et al. Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Front Microbiol. 6, 1036 (2015).
-
(2015)
Front Microbiol
, vol.6
, pp. 1036
-
-
Freschi, L.1
-
20
-
-
84965190732
-
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
-
Treangen, T. J., Ondov, B. D., Koren, S., Phillippy, A. M. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome Biol. 15, 524 (2014).
-
(2014)
Genome Biol
, vol.15
, pp. 524
-
-
Treangen, T.J.1
Ondov, B.D.2
Koren, S.3
Phillippy, A.M.4
-
21
-
-
84926620810
-
Divergent, coexisting Pseudomonas aeruginosa lineages in chronic cystic fibrosis lung infections
-
Williams, D. et al. Divergent, coexisting Pseudomonas aeruginosa lineages in chronic cystic fibrosis lung infections. Am J Respir Crit Care Med. 191, 775-785 (2015).
-
(2015)
Am J Respir Crit Care Med.
, vol.191
, pp. 775-785
-
-
Williams, D.1
-
22
-
-
84895531123
-
Comparative genomics of isolates of a Pseudomonas aeruginosa epidemic strain associated with chronic lung infections of cystic fibrosis patients
-
Jeukens, J. et al. Comparative genomics of isolates of a Pseudomonas aeruginosa epidemic strain associated with chronic lung infections of cystic fibrosis patients. PLoSOne. 9, e87611, doi: 10.1371/journal.pone.0087611 (2014).
-
(2014)
PLoSOne
, vol.9
, pp. e87611
-
-
Jeukens, J.1
-
23
-
-
79956307094
-
Evolutionary dynamics of bacteria in a human host environment
-
Yang, L. et al. Evolutionary dynamics of bacteria in a human host environment. Proc Natl Acad Sci USA. 108, 7481-6 (2011).
-
(2011)
Proc Natl Acad Sci USA.
, vol.108
, pp. 7481-7486
-
-
Yang, L.1
-
24
-
-
84908338190
-
Coexistence and within-host evolution of diversified lineages of hypermutable Pseudomonas aeruginosa in long-term cystic fibrosis infections
-
Feliziani, S. et al. Coexistence and within-host evolution of diversified lineages of hypermutable Pseudomonas aeruginosa in long-term cystic fibrosis infections. PLoS Genet. 10, e1004651, doi: 10.1371/journal.pgen.1004651 (2014).
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004651
-
-
Feliziani, S.1
-
25
-
-
84884679783
-
Genome analysis of a transmissible lineage of Pseudomonas aeruginosa reveals pathoadaptive mutations and distinct evolutionary paths of hypermutators
-
Marvig, R. L., Johansen, H. K., Molin, S., Jelsbak, L. Genome analysis of a transmissible lineage of Pseudomonas aeruginosa reveals pathoadaptive mutations and distinct evolutionary paths of hypermutators. PLoS Genet. 9, e1003741, doi: 10.1371/journal.pgen.1003741 (2013).
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003741
-
-
Marvig, R.L.1
Johansen, H.K.2
Molin, S.3
Jelsbak, L.4
-
26
-
-
79959841531
-
Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs
-
Cramer, N. et al. Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs. Environ Microbiol. 13, 1690-704 (2011).
-
(2011)
Environ Microbiol
, vol.13
, pp. 1690-1704
-
-
Cramer, N.1
-
27
-
-
84857646835
-
Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: An international expert proposal for interim standard definitions for acquired resistance
-
Magiorakos, A. P. et al. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: An international expert proposal for interim standard definitions for acquired resistance. Clin Microbiol Infect. 18, 268-81 (2012).
-
(2012)
Clin Microbiol Infect
, vol.18
, pp. 268-281
-
-
Magiorakos, A.P.1
-
28
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
Zankari, E. et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 67, 2640-2644 (2012).
-
(2012)
J Antimicrob Chemother.
, vol.67
, pp. 2640-2644
-
-
Zankari, E.1
-
29
-
-
23044473638
-
Hypermutation is a key factor in development of multiple-antimicrobial resistance in Pseudomonas aeruginosa strains causing chronic lung infections
-
Maciá, M. D. et al. Hypermutation is a key factor in development of multiple-antimicrobial resistance in Pseudomonas aeruginosa strains causing chronic lung infections. Antimicrob Agents Chemother. 49, 3382-6 (2005).
-
(2005)
Antimicrob Agents Chemother.
, vol.49
, pp. 3382-3386
-
-
MacIá, M.D.1
-
30
-
-
79955530880
-
Overexpression of AmpC and efflux pumps in Pseudomonas aeruginosa isolates from bloodstream infections: Prevalence and impact on resistance in a Spanish multicenter study
-
Cabot, G. et al. Overexpression of AmpC and efflux pumps in Pseudomonas aeruginosa isolates from bloodstream infections: Prevalence and impact on resistance in a Spanish multicenter study. Antimicrob. Agents Chemother. 55, 1906-1911 (2011).
-
(2011)
Antimicrob. Agents Chemother.
, vol.55
, pp. 1906-1911
-
-
Cabot, G.1
-
31
-
-
63449128597
-
Beta-lactam resistance response triggered by inactivation of a nonessential penicillin-binding protein
-
Moyà, B. et al. Beta-lactam resistance response triggered by inactivation of a nonessential penicillin-binding protein. PLoS Pathog. 5, e1000353, doi: 10.1371/journal.ppat.1000353 (2009).
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000353
-
-
Moyà, B.1
-
32
-
-
84946595400
-
Selective sweeps and parallel pathoadaptation drive Pseudomonas aeruginosa evolution in the cystic fibrosis lung
-
Diáz-Caballero, J. et al. Selective sweeps and parallel pathoadaptation drive Pseudomonas aeruginosa evolution in the cystic fibrosis lung. MBio. 6, e00981-15, doi: 10.1128/mBio.00981-15 (2015).
-
(2015)
MBio
, vol.6
, pp. e00981-e001015
-
-
Diáz-Caballero, J.1
-
33
-
-
84960192153
-
Evolution of Pseudomonas aeruginosa antimicrobial resistance and fitness under low and high mutation rates
-
Cabot, G. et al. Evolution of Pseudomonas aeruginosa antimicrobial resistance and fitness under low and high mutation rates. Antimicrob Agents Chemother. 60, 1767-1778 (2016).
-
(2016)
Antimicrob Agents Chemother
, vol.60
, pp. 1767-1778
-
-
Cabot, G.1
-
34
-
-
78650656571
-
Structural basis for effectiveness of siderophore-conjugated monocarbams against clinically relevant strains of Pseudomonas aeruginosa
-
Han, S. et al. Structural basis for effectiveness of siderophore-conjugated monocarbams against clinically relevant strains of Pseudomonas aeruginosa. Proc Natl Acad Sci USA 107, 22002-22007 (2010).
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 22002-22007
-
-
Han, S.1
-
35
-
-
84996565849
-
Deciphering the resistome of the widespread Pseudomonas aeruginosa sequence type 175 international high-risk clone through whole-genome sequencing
-
Cabot, G. et al. Deciphering the resistome of the widespread Pseudomonas aeruginosa sequence type 175 international high-risk clone through whole-genome sequencing. Antimicrob Agents Chemother. 60, 7415-7423 (2016).
-
(2016)
Antimicrob Agents Chemother
, vol.60
, pp. 7415-7423
-
-
Cabot, G.1
-
36
-
-
84920164355
-
The resistome of Pseudomonas aeruginosa in relationship to phenotypic susceptibility
-
Kos, V. N. et al. The resistome of Pseudomonas aeruginosa in relationship to phenotypic susceptibility. Antimicrob Agents Chemother. 59, 427-36 (2015).
-
(2015)
Antimicrob Agents Chemother.
, vol.59
, pp. 427-436
-
-
Kos, V.N.1
-
37
-
-
66149134410
-
Efflux unbalance in Pseudomonas aeruginosa isolates from cystic fibrosis patients
-
Vettoretti, L. et al. Efflux unbalance in Pseudomonas aeruginosa isolates from cystic fibrosis patients. Antimicrob Agents Chemother. 53, 1987-97 (2009).
-
(2009)
Antimicrob Agents Chemother.
, vol.53
, pp. 1987-1997
-
-
Vettoretti, L.1
-
38
-
-
12944262276
-
Aminoglycoside resistance in Pseudomonas aeruginosa
-
Poole, K. Aminoglycoside resistance in Pseudomonas aeruginosa. Antimicrob Agents Chemother. 49, 479-87 (2005).
-
(2005)
Antimicrob Agents Chemother.
, vol.49
, pp. 479-487
-
-
Poole, K.1
-
39
-
-
0037378945
-
MexXY-OprM efflux pump is necessary for adaptive resistance of Pseudomonas aeruginosa to aminoglycosides
-
Hocquet, D. et al. MexXY-OprM efflux pump is necessary for adaptive resistance of Pseudomonas aeruginosa to aminoglycosides. Antimicrob Agents Chemother. 47, 1371-5 (2003).
-
(2003)
Antimicrob Agents Chemother
, vol.47
, pp. 1371-1375
-
-
Hocquet, D.1
-
40
-
-
84977566041
-
Aminoglycoside resistance of Pseudomonas aeruginosa in cystic fibrosis results from convergent evolution in the mexZ gene
-
Prickett, M. H. et al. Aminoglycoside resistance of Pseudomonas aeruginosa in cystic fibrosis results from convergent evolution in the mexZ gene. Thorax. 72, 40-47 (2017).
-
(2017)
Thorax
, vol.72
, pp. 40-47
-
-
Prickett, M.H.1
-
41
-
-
2142697190
-
Role of the multidrug efflux system MexXY in the emergence of moderate resistance to aminoglycosides among Pseudomonas aeruginosa isolates from patients with cystic fibrosis
-
Vogne, C., Aires, J. R., Bailly, C., Hocquet, D., Plésiat, P. Role of the multidrug efflux system MexXY in the emergence of moderate resistance to aminoglycosides among Pseudomonas aeruginosa isolates from patients with cystic fibrosis. Antimicrob Agents Chemother. 48, 1676-80 (2004).
-
(2004)
Antimicrob Agents Chemother.
, vol.48
, pp. 1676-1680
-
-
Vogne, C.1
Aires, J.R.2
Bailly, C.3
Hocquet, D.4
Plésiat, P.5
-
42
-
-
84977126109
-
Dynamics of mutations during development of resistance by Pseudomonas aeruginosa against five antibiotics
-
Feng, Y., Jonker, M. J., Moustakas, I., Brul, S., Ter Kuile, B. H. Dynamics of mutations during development of resistance by Pseudomonas aeruginosa against five antibiotics. Antimicrob Agents Chemother. 60, 4229-36 (2016).
-
(2016)
Antimicrob Agents Chemother
, vol.60
, pp. 4229-4236
-
-
Feng, Y.1
Jonker, M.J.2
Moustakas, I.3
Brul, S.4
Ter Kuile, B.H.5
-
43
-
-
57049100540
-
Novel genetic determinants of low-level aminoglycoside resistance in Pseudomonas aeruginosa
-
Schurek, K. N. et al. Novel genetic determinants of low-level aminoglycoside resistance in Pseudomonas aeruginosa. Antimicrob. Agents Chemother. 52, 4213-4219 (2008).
-
(2008)
Antimicrob. Agents Chemother.
, vol.52
, pp. 4213-4219
-
-
Schurek, K.N.1
-
44
-
-
33847650484
-
Cumulative effects of several nonenzymatic mechanisms on the resistance of Pseudomonas aeruginosa to aminoglycosides
-
El'Garch, F., Jeannot, K., Hocquet, D., Llanes-Barakat, C., Plésiat, P. Cumulative effects of several nonenzymatic mechanisms on the resistance of Pseudomonas aeruginosa to aminoglycosides. Antimicrob Agents Chemother. 51, 1016-21 (2007).
-
(2007)
Antimicrob Agents Chemother
, vol.51
, pp. 1016-1021
-
-
El'Garch, F.1
Jeannot, K.2
Hocquet, D.3
Llanes-Barakat, C.4
Plésiat, P.5
-
45
-
-
84994850387
-
Molecular epidemiology of mutations in antimicrobial resistance loci of Pseudomonas aeruginosa isolates from airways of cystic fibrosis patients
-
Greipel, L. et al. Molecular epidemiology of mutations in antimicrobial resistance loci of Pseudomonas aeruginosa isolates from airways of cystic fibrosis patients. Antimicrob Agents Chemother. 60, 6726-6734 (2016).
-
(2016)
Antimicrob Agents Chemother
, vol.60
, pp. 6726-6734
-
-
Greipel, L.1
-
46
-
-
0242648332
-
Overexpression of the mexC-mexD-oprJ efflux operon in nfxB-type multidrug-resistant strains of Pseudomonas aeruginosa
-
Poole, K. et al. Overexpression of the mexC-mexD-oprJ efflux operon in nfxB-type multidrug-resistant strains of Pseudomonas aeruginosa. Mol Microbiol. 21, 713-724 (1996).
-
(1996)
Mol Microbiol.
, vol.21
, pp. 713-724
-
-
Poole, K.1
-
47
-
-
80052845657
-
Antagonistic interactions of Pseudomonas aeruginosa antibiotic resistance mechanisms in planktonic but not biofilm growth
-
Mulet, X. et al. Antagonistic interactions of Pseudomonas aeruginosa antibiotic resistance mechanisms in planktonic but not biofilm growth. Antimicrob Agents Chemother. 55, 4560-4568 (2011).
-
(2011)
Antimicrob Agents Chemother.
, vol.55
, pp. 4560-4568
-
-
Mulet, X.1
-
48
-
-
0032994202
-
Detection of gyrA mutations among 335 Pseudomonas aeruginosa strains isolated in Japan and their susceptibilities to fluoroquinolones
-
Takenouchi, T., Sakagawa, E., Sugawara, M. Detection of gyrA mutations among 335 Pseudomonas aeruginosa strains isolated in Japan and their susceptibilities to fluoroquinolones. Antimicrob Agents Chemother. 43, 406-9 (1999).
-
(1999)
Antimicrob Agents Chemother.
, vol.43
, pp. 406-409
-
-
Takenouchi, T.1
Sakagawa, E.2
Sugawara, M.3
-
49
-
-
84908463538
-
LpxC inhibitors as new antibacterial agents and tools for studying regulation of lipid A biosynthesis in Gram-negative pathogens
-
Tomaras, A. P. et al. LpxC inhibitors as new antibacterial agents and tools for studying regulation of lipid A biosynthesis in Gram-negative pathogens. MBio. 5, e01551-14, doi: 10.1128/mBio.01551-14 (2014).
-
(2014)
MBio
, vol.5
, pp. e01551-e01614
-
-
Tomaras, A.P.1
-
50
-
-
84876226990
-
Polymyxin resistance of Pseudomonas aeruginosa phoQ mutants is dependent on additional two-component regulatory systems
-
Gutu, A. D. et al. Polymyxin resistance of Pseudomonas aeruginosa phoQ mutants is dependent on additional two-component regulatory systems. Antimicrob Agents Chemother. 57, 2204-15 (2013).
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 2204-2215
-
-
Gutu, A.D.1
-
51
-
-
84869204668
-
The two-component system CprRS senses cationic peptides and triggers adaptive resistance in Pseudomonas aeruginosa independently of ParRS
-
Fernández, L. et al. The two-component system CprRS senses cationic peptides and triggers adaptive resistance in Pseudomonas aeruginosa independently of ParRS. Antimicrob Agents Chemother. 56, 6212-22 (2012).
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 6212-6222
-
-
Fernández, L.1
-
52
-
-
84863393429
-
PmrB mutations promote polymyxin resistance of Pseudomonas aeruginosa isolated from colistin-treated cystic fibrosis patients
-
Moskowitz, S. M. et al. PmrB mutations promote polymyxin resistance of Pseudomonas aeruginosa isolated from colistin-treated cystic fibrosis patients. Antimicrob Agents Chemother. 56, 1019-30 (2012).
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 1019-1030
-
-
Moskowitz, S.M.1
-
53
-
-
81555211920
-
PhoQ mutations promote lipid A modification and polymyxin resistance of Pseudomonas aeruginosa found in colistin-treated cystic fibrosis patients
-
Miller, A. K. et al. PhoQ mutations promote lipid A modification and polymyxin resistance of Pseudomonas aeruginosa found in colistin-treated cystic fibrosis patients. Antimicrob Agents Chemother. 55, 5761-9 (2011).
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 5761-5769
-
-
Miller, A.K.1
-
54
-
-
77955376940
-
Adaptive resistance to the last hope" antibiotics polymyxin B and colistin in Pseudomonas aeruginosa is mediated by the novel two-component regulatory system ParR-ParS
-
Fernández, L. et al. Adaptive resistance to the "last hope" antibiotics polymyxin B and colistin in Pseudomonas aeruginosa is mediated by the novel two-component regulatory system ParR-ParS. Antimicrob Agents Chemother. 54, 3372-82 (2010).
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 3372-3382
-
-
Fernández, L.1
-
55
-
-
84931330941
-
Development of colistin resistance in pmrA-, phoP-, parR-A nd cprR-inactivated mutants of Pseudomonas aeruginosa
-
Lee, J. Y. et al. Development of colistin resistance in pmrA-, phoP-, parR-A nd cprR-inactivated mutants of Pseudomonas aeruginosa. J Antimicrob Chemother. 69, 2966-71 (2014).
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 2966-2971
-
-
Lee, J.Y.1
-
56
-
-
71249110157
-
Alterations in two-component regulatory systems of phoPQ and pmrAB are associated with polymyxin B resistance in clinical isolates of Pseudomonas aeruginosa
-
Barrow, K., Kwon, D. H. Alterations in two-component regulatory systems of phoPQ and pmrAB are associated with polymyxin B resistance in clinical isolates of Pseudomonas aeruginosa. Antimicrob Agents Chemother. 53, 5150-4 (2009).
-
(2009)
Antimicrob Agents Chemother.
, vol.53
, pp. 5150-5154
-
-
Barrow, K.1
Kwon, D.H.2
-
57
-
-
33646458074
-
Stepwise upregulation of the Pseudomonas aeruginosa chromosomal cephalosporinase conferring high-level beta-lactam resistance involves three AmpD homologues
-
Juan, C., Moyá, B., Pérez, J. L., Oliver, A. Stepwise upregulation of the Pseudomonas aeruginosa chromosomal cephalosporinase conferring high-level beta-lactam resistance involves three AmpD homologues. Antimicrob Agents Chemother. 50, 1780-7 (2006).
-
(2006)
Antimicrob Agents Chemother.
, vol.50
, pp. 1780-1787
-
-
Juan, C.1
Moyá, B.2
Pérez, J.L.3
Oliver, A.4
-
58
-
-
85028139131
-
Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis
-
Marvig, R. L., Sommer, L. M., Molin, S., Johansen, H. K. Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis. Nat Genet. 47, 57-64 (2015).
-
(2015)
Nat Genet.
, vol.47
, pp. 57-64
-
-
Marvig, R.L.1
Sommer, L.M.2
Molin, S.3
Johansen, H.K.4
-
59
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9, 357-9 (2012).
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
60
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 25, 2078-9 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
61
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M. A. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 43, 491-8 (2011).
-
(2011)
Nat Genet.
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
-
62
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D. R., Birney, E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-9 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
63
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S. et al. Versatile and open software for comparing large genomes. Genome Biol. 5, R12 (2004).
-
(2004)
Genome Biol.
, vol.5
, pp. R12
-
-
Kurtz, S.1
-
64
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond, A. J., Suchard, M. A., Xie, D., Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29, 1969-1973 (2012).
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
65
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
-
Cingolani, P. et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin). 6, 80-92 (2012).
-
(2012)
Fly (Austin)
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
|