메뉴 건너뛰기




Volumn 191, Issue 7, 2015, Pages 775-785

Divergent, coexisting Pseudomonas aeruginosa lineages in chronic cystic fibrosis lung infections

Author keywords

Bacteria; Genomics; Homologous recombination; Population genetics

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIUM ISOLATE; CLINICAL ARTICLE; COMPARATIVE STUDY; CYSTIC FIBROSIS; EVOLUTIONARY ADAPTATION; GENE FREQUENCY; GENETIC DISTANCE; GENETIC VARIABILITY; HOMOLOGOUS RECOMBINATION; HUMAN; LUNG INFECTION; PHYLOGENY; POPULATION GENETIC STRUCTURE; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SPUTUM ANALYSIS; ADULT; AGED; CHRONIC DISEASE; FEMALE; GENETIC VARIATION; GENETICS; ISOLATION AND PURIFICATION; MALE; MICROBIOLOGY; MIDDLE AGED; PHENOTYPE; PSEUDOMONAS INFECTION; RESPIRATORY TRACT INFECTION; VERY ELDERLY;

EID: 84926620810     PISSN: 1073449X     EISSN: 15354970     Source Type: Journal    
DOI: 10.1164/rccm.201409-1646OC     Document Type: Article
Times cited : (100)

References (48)
  • 1
    • 33947197663 scopus 로고    scopus 로고
    • The epidemiology, pathogenesis and treatment of Pseudomonas aeruginosa infections
    • Driscoll JA, Brody SL, Kollef MH. The epidemiology, pathogenesis and treatment of Pseudomonas aeruginosa infections. Drugs 2007;67:351-368.
    • (2007) Drugs , vol.67 , pp. 351-368
    • Driscoll, J.A.1    Brody, S.L.2    Kollef, M.H.3
  • 2
    • 33846284918 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa chronic colonization in cystic fibrosis patients
    • Murray TS, Egan M, Kazmierczak BI. Pseudomonas aeruginosa chronic colonization in cystic fibrosis patients. Curr Opin Pediatr 2007;19:83-88.
    • (2007) Curr Opin Pediatr , vol.19 , pp. 83-88
    • Murray, T.S.1    Egan, M.2    Kazmierczak, B.I.3
  • 3
    • 0029814366 scopus 로고    scopus 로고
    • Microbial pathogenesis in cystic fibrosis: Mucoid Pseudomonas aeruginosa and Burkholderia cepacia
    • Govan JR, Deretic V. Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. Microbiol Rev 1996;60:539-574.
    • (1996) Microbiol Rev , vol.60 , pp. 539-574
    • Govan, J.R.1    Deretic, V.2
  • 5
    • 7744220530 scopus 로고    scopus 로고
    • A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa
    • Goodman AL, Kulasekara B, Rietsch A, Boyd D, Smith RS, Lory S. A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa. Dev Cell 2004;7:745-754.
    • (2004) Dev Cell , vol.7 , pp. 745-754
    • Goodman, A.L.1    Kulasekara, B.2    Rietsch, A.3    Boyd, D.4    Smith, R.S.5    Lory, S.6
  • 6
    • 0033837207 scopus 로고    scopus 로고
    • Increased sputum amino acid concentrations and auxotrophy of Pseudomonas aeruginosa in severe cystic fibrosis lung disease
    • Thomas SR, Ray A, Hodson ME, Pitt TL. Increased sputum amino acid concentrations and auxotrophy of Pseudomonas aeruginosa in severe cystic fibrosis lung disease. Thorax 2000;55:795-797.
    • (2000) Thorax , vol.55 , pp. 795-797
    • Thomas, S.R.1    Ray, A.2    Hodson, M.E.3    Pitt, T.L.4
  • 7
    • 77950648700 scopus 로고    scopus 로고
    • Genetic adaptation of Pseudomonas aeruginosa during chronic lung infection of patients with cystic fibrosis: Strong and weak mutators with heterogeneous genetic backgrounds emerge in mucA and/or lasR mutants
    • Ciofu O, Mandsberg LF, Bjarnsholt T, Wassermann T, Høiby N. Genetic adaptation of Pseudomonas aeruginosa during chronic lung infection of patients with cystic fibrosis: strong and weak mutators with heterogeneous genetic backgrounds emerge in mucA and/or lasR mutants. Microbiology 2010;156:1108-1119.
    • (2010) Microbiology , vol.156 , pp. 1108-1119
    • Ciofu, O.1    Mandsberg, L.F.2    Bjarnsholt, T.3    Wassermann, T.4    Høiby, N.5
  • 8
    • 84860614797 scopus 로고    scopus 로고
    • Increasing resistance of the Liverpool Epidemic Strain (LES) of Pseudomonas aeruginosa (Psa) to antibiotics in cystic fibrosis (CF) - A cause for concern?
    • Ashish A, Shaw M, Winstanley C, Ledson MJ, Walshaw MJ. Increasing resistance of the Liverpool Epidemic Strain (LES) of Pseudomonas aeruginosa (Psa) to antibiotics in cystic fibrosis (CF) - a cause for concern? J Cyst Fibros 2012;11:173-179.
    • (2012) J Cyst Fibros , vol.11 , pp. 173-179
    • Ashish, A.1    Shaw, M.2    Winstanley, C.3    Ledson, M.J.4    Walshaw, M.J.5
  • 9
    • 72449123193 scopus 로고    scopus 로고
    • Instantaneous within-patient diversity of Pseudomonas aeruginosa quorum-sensing populations from cystic fibrosis lung infections
    • Wilder CN, Allada G, Schuster M. Instantaneous within-patient diversity of Pseudomonas aeruginosa quorum-sensing populations from cystic fibrosis lung infections. Infect Immun 2009;77:5631-5639.
    • (2009) Infect Immun , vol.77 , pp. 5631-5639
    • Wilder, C.N.1    Allada, G.2    Schuster, M.3
  • 10
    • 77954645140 scopus 로고    scopus 로고
    • Early adaptive developments of Pseudomonas aeruginosa after the transition from life in the environment to persistent colonization in the airways of human cystic fi brosis hosts
    • Rau MH, Hansen SK, Johansen HK, Thomsen LE, Workman CT, Nielsen KF, Jelsbak L, Høiby N, Yang L, Molin S. Early adaptive developments of Pseudomonas aeruginosa after the transition from life in the environment to persistent colonization in the airways of human cystic fibrosis hosts. Environ Microbiol 2010;12:1643-1658.
    • (2010) Environ Microbiol , vol.12 , pp. 1643-1658
    • Rau, M.H.1    Hansen, S.K.2    Johansen, H.K.3    Thomsen, L.E.4    Workman, C.T.5    Nielsen, K.F.6    Jelsbak, L.7    Høiby, N.8    Yang, L.9    Molin, S.10
  • 12
    • 84863448941 scopus 로고    scopus 로고
    • Transmissible strains of Pseudomonas aeruginosa in cystic fibrosis lung infections
    • Fothergill JL, Walshaw MJ, Winstanley C. Transmissible strains of Pseudomonas aeruginosa in cystic fibrosis lung infections. Eur Respir J 2012;40:227-238.
    • (2012) Eur Respir J , vol.40 , pp. 227-238
    • Fothergill, J.L.1    Walshaw, M.J.2    Winstanley, C.3
  • 18
    • 84884679783 scopus 로고    scopus 로고
    • Genome analysis of a transmissible lineage of Pseudomonas aeruginosa reveals pathoadaptive mutations and distinct evolutionary paths of hypermutators
    • Marvig RL, Johansen HK, Molin S, Jelsbak L. Genome analysis of a transmissible lineage of Pseudomonas aeruginosa reveals pathoadaptive mutations and distinct evolutionary paths of hypermutators. PLoS Genet 2013;9:e1003741.
    • (2013) PLoS Genet , vol.9 , pp. e1003741
    • Marvig, R.L.1    Johansen, H.K.2    Molin, S.3    Jelsbak, L.4
  • 20
    • 84888018473 scopus 로고    scopus 로고
    • Extensive diversification is a common feature of Pseudomonas aeruginosa populations during respiratory infections in cystic fibrosis
    • Ashish A, Paterson S, Mowat E, Fothergill JL, Walshaw MJ, Winstanley C. Extensive diversification is a common feature of Pseudomonas aeruginosa populations during respiratory infections in cystic fibrosis. J Cyst Fibros 2013;12:790-793.
    • (2013) J Cyst Fibros , vol.12 , pp. 790-793
    • Ashish, A.1    Paterson, S.2    Mowat, E.3    Fothergill, J.L.4    Walshaw, M.J.5    Winstanley, C.6
  • 25
    • 84891351800 scopus 로고    scopus 로고
    • Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures
    • Lieberman TD, Flett KB, Yelin I, Martin TR, McAdam AJ, Priebe GP, Kishony R. Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures. Nat Genet 2014;46:82-87.
    • (2014) Nat Genet , vol.46 , pp. 82-87
    • Lieberman, T.D.1    Flett, K.B.2    Yelin, I.3    Martin, T.R.4    McAdam, A.J.5    Priebe, G.P.6    Kishony, R.7
  • 26
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009;25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 28
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 1997;14:685-695.
    • (1997) Mol Biol Evol , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 29
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004;20:289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 31
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003;19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 32
    • 77954202497 scopus 로고    scopus 로고
    • DendroPy: A Python library for phylogenetic computing
    • Sukumaran J, Holder MT. DendroPy: a Python library for phylogenetic computing. Bioinformatics 2010;26:1569-1571.
    • (2010) Bioinformatics , vol.26 , pp. 1569-1571
    • Sukumaran, J.1    Holder, M.T.2
  • 33
    • 84864453108 scopus 로고    scopus 로고
    • jModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 2012;9:772.
    • (2012) Nat Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 34
    • 38149079760 scopus 로고    scopus 로고
    • Testing regions with nonsmooth boundaries via multiscale bootstrap
    • Shimodaira H. Testing regions with nonsmooth boundaries via multiscale bootstrap. J Stat Plan Inference 2008;138:1227-1241.
    • (2008) J Stat Plan Inference , vol.138 , pp. 1227-1241
    • Shimodaira, H.1
  • 35
    • 79955109754 scopus 로고    scopus 로고
    • PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
    • Sipos B, Massingham T, Jordan GE, Goldman N. PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment. BMC Bioinformatics 2011;12:104.
    • (2011) BMC Bioinformatics , vol.12 , pp. 104
    • Sipos, B.1    Massingham, T.2    Jordan, G.E.3    Goldman, N.4
  • 36
    • 0037137207 scopus 로고    scopus 로고
    • Characterization of the GO system of Pseudomonas aeruginosa
    • Oliver A, Sánchez JM, Blázquez J. Characterization of the GO system of Pseudomonas aeruginosa. FEMS Microbiol Lett 2002;217:31-35.
    • (2002) FEMS Microbiol Lett , vol.217 , pp. 31-35
    • Oliver, A.1    Sánchez, J.M.2    Blázquez, J.3
  • 37
    • 0036274037 scopus 로고    scopus 로고
    • The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: Molecular characterization of naturally occurring mutants
    • Oliver A, Baquero F, Blázquez J. The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: molecular characterization of naturally occurring mutants. Mol Microbiol 2002;43:1641-1650.
    • (2002) Mol Microbiol , vol.43 , pp. 1641-1650
    • Oliver, A.1    Baquero, F.2    Blázquez, J.3
  • 38
    • 0034685940 scopus 로고    scopus 로고
    • High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection
    • Oliver A, Cantón R, Campo P, Baquero F, Blázquez J. High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. Science 2000;288:1251-1254.
    • (2000) Science , vol.288 , pp. 1251-1254
    • Oliver, A.1    Cantón, R.2    Campo, P.3    Baquero, F.4    Blázquez, J.5
  • 39
    • 84908338190 scopus 로고    scopus 로고
    • Coexistence and within-host evolution of diversi fied lineages of hypermutable Pseudomonas aeruginosa in long-term cystic fibrosis infections
    • Feliziani S, Marvig RL, Luján AM, Moyano AJ, Di Rienzo JA, Krogh Johansen H, Molin S, Smania AM. Coexistence and within-host evolution of diversi fied lineages of hypermutable Pseudomonas aeruginosa in long-term cystic fibrosis infections. PLoS Genet 2014; 10:e1004651.
    • (2014) PLoS Genet , vol.10 , pp. e1004651
    • Feliziani, S.1    Marvig, R.L.2    Luján, A.M.3    Moyano, A.J.4    Di Rienzo, J.A.5    Krogh Johansen, H.6    Molin, S.7    Smania, A.M.8
  • 40
    • 78549237780 scopus 로고    scopus 로고
    • Clonal epidemiology of Pseudomonas aeruginosa in cystic fibrosis
    • Cramer N, Wiehlmann L, Tümmler B. Clonal epidemiology of Pseudomonas aeruginosa in cystic fibrosis. Int J Med Microbiol 2010;300:526-533.
    • (2010) Int J Med Microbiol , vol.300 , pp. 526-533
    • Cramer, N.1    Wiehlmann, L.2    Tümmler, B.3
  • 42
    • 84866137177 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa exhibits frequent recombination, but only a limited association between genotype and ecological setting
    • Kidd TJ, Ritchie SR, Ramsay KA, Grimwood K, Bell SC, Rainey PB. Pseudomonas aeruginosa exhibits frequent recombination, but only a limited association between genotype and ecological setting. PLoS One 2012;7:e44199.
    • (2012) PLoS One , vol.7 , pp. e44199
    • Kidd, T.J.1    Ritchie, S.R.2    Ramsay, K.A.3    Grimwood, K.4    Bell, S.C.5    Rainey, P.B.6
  • 43
    • 45949100171 scopus 로고    scopus 로고
    • Fitness of isogenic colony morphology variants of Pseudomonas aeruginosa in murine airway infection
    • Rakhimova E, Munder A, Wiehlmann L, Bredenbruch F, Tümmler B. Fitness of isogenic colony morphology variants of Pseudomonas aeruginosa in murine airway infection. PLoS One 2008;3:e1685.
    • (2008) PLoS One , vol.3 , pp. e1685
    • Rakhimova, E.1    Munder, A.2    Wiehlmann, L.3    Bredenbruch, F.4    Tümmler, B.5
  • 44
    • 84877339385 scopus 로고    scopus 로고
    • Evolutionary remodeling of global regulatory networks during long-term bacterial adaptation to human hosts
    • Damkiær S, Yang L, Molin S, Jelsbak L. Evolutionary remodeling of global regulatory networks during long-term bacterial adaptation to human hosts. Proc Natl Acad Sci USA 2013;110:7766-7771.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 7766-7771
    • Damkiær, S.1    Yang, L.2    Molin, S.3    Jelsbak, L.4
  • 45
    • 84891372431 scopus 로고    scopus 로고
    • Halting the spread of epidemic Pseudomonas aeruginosa in an adult cystic fibrosis centre: A prospective cohort study
    • Ashish A, Shaw M, Winstanley C, Humphreys L, Walshaw MJ. Halting the spread of epidemic Pseudomonas aeruginosa in an adult cystic fibrosis centre: a prospective cohort study. JRSM Short Rep 2013;4:1.
    • (2013) JRSM Short Rep , vol.4 , pp. 1
    • Ashish, A.1    Shaw, M.2    Winstanley, C.3    Humphreys, L.4    Walshaw, M.J.5
  • 46
    • 1942469578 scopus 로고    scopus 로고
    • Increased morbidity associated with chronic infection by an epidemic Pseudomonas aeruginosa strain in CF patients
    • Al-Aloul M, Crawley J, Winstanley C, Hart CA, Ledson MJ, Walshaw MJ. Increased morbidity associated with chronic infection by an epidemic Pseudomonas aeruginosa strain in CF patients. Thorax 2004;59:334-336.
    • (2004) Thorax , vol.59 , pp. 334-336
    • Al-Aloul, M.1    Crawley, J.2    Winstanley, C.3    Hart, C.A.4    Ledson, M.J.5    Walshaw, M.J.6
  • 48
    • 0037541096 scopus 로고    scopus 로고
    • Susceptibility testing of Pseudomonas aeruginosa isolates and clinical response to parenteral antibiotic administration: Lack of association in cystic fibrosis
    • Smith AL, Fiel SB, Mayer-Hamblett N, Ramsey B, Burns JL. Susceptibility testing of Pseudomonas aeruginosa isolates and clinical response to parenteral antibiotic administration: lack of association in cystic fibrosis. Chest 2003;123:1495-1502.
    • (2003) Chest , vol.123 , pp. 1495-1502
    • Smith, A.L.1    Fiel, S.B.2    Mayer-Hamblett, N.3    Ramsey, B.4    Burns, J.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.