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Volumn 33, Issue 14, 2017, Pages i274-i282

Integrative deep models for alternative splicing

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TRANSCRIPTOME;

EID: 85024472425     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btx268     Document Type: Conference Paper
Times cited : (56)

References (19)
  • 1
    • 84966697335 scopus 로고    scopus 로고
    • Position-dependent activity of celf2 in the regulation of splicing and implications for signal-responsive regulation in t cells
    • Ajith, S. et al. (2016) Position-dependent activity of celf2 in the regulation of splicing and implications for signal-responsive regulation in t cells. RNA Biol., 13, 569-581.
    • (2016) RNA Biol. , vol.13 , pp. 569-581
    • Ajith, S.1
  • 2
    • 77952029221 scopus 로고    scopus 로고
    • Deciphering the splicing code
    • Barash, Y. et al. (2010a) Deciphering the splicing code. Nature, 465, 53-59.
    • (2010) Nature , vol.465 , pp. 53-59
    • Barash, Y.1
  • 3
    • 77954196300 scopus 로고    scopus 로고
    • Model-based detection of alternative splicing signals
    • Barash, Y. et al. (2010b) Model-based detection of alternative splicing signals. Bioinformatics, 26, i325-i333.
    • (2010) Bioinformatics , vol.26 , pp. i325-i333
    • Barash, Y.1
  • 4
    • 84886029445 scopus 로고    scopus 로고
    • Avispa: A web tool for the prediction and analysis of alternative splicing
    • Barash, Y. et al. (2013) Avispa: A web tool for the prediction and analysis of alternative splicing. Genome Biol., 14, R114.
    • (2013) Genome Biol. , vol.14 , pp. R114
    • Barash, Y.1
  • 5
    • 80054976678 scopus 로고    scopus 로고
    • The evolution of gene expression levels in mammalian organs
    • Brawand, D. et al. (2011) The evolution of gene expression levels in mammalian organs. Nature, 478, 343-348.
    • (2011) Nature , vol.478 , pp. 343-348
    • Brawand, D.1
  • 6
    • 84899053832 scopus 로고    scopus 로고
    • In silico to in vivo splicing analysis using splicing code models
    • Gazzara, M.R. et al. (2014) In silico to in vivo splicing analysis using splicing code models. Methods, 67, 3-12.
    • (2014) Methods , vol.67 , pp. 3-12
    • Gazzara, M.R.1
  • 7
    • 85024499465 scopus 로고    scopus 로고
    • Ancient antagonism between Celf and Rbfox families tunes mRNA splicing outcomes
    • in press
    • Gazzara, M.R. et al. (2017) Ancient antagonism between Celf and Rbfox families tunes mRNA splicing outcomes. Genome Res., in press.
    • (2017) Genome Res
    • Gazzara, M.R.1
  • 8
    • 80052851950 scopus 로고    scopus 로고
    • Mouse genomic variation and its effect on pheno-types and gene regulation
    • Keane, T.M. et al. (2011) Mouse genomic variation and its effect on pheno-types and gene regulation. Nature, 477, 289-294.
    • (2011) Nature , vol.477 , pp. 289-294
    • Keane, T.M.1
  • 9
    • 84902462761 scopus 로고    scopus 로고
    • Deep learning of the tissue-regulated splicing code
    • Leung, M.K.K. et al. (2014) Deep learning of the tissue-regulated splicing code. Bioinformatics, 30, i121-i129.
    • (2014) Bioinformatics , vol.30 , pp. i121-i129
    • Leung, M.K.K.1
  • 10
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan, Q. et al. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet., 40, 1413-1415.
    • (2008) Nat. Genet. , vol.40 , pp. 1413-1415
    • Pan, Q.1
  • 11
    • 84926480647 scopus 로고    scopus 로고
    • The RNA-binding protein rbfox1 regulates splicing required for skeletal muscle structure and function
    • Pedrotti, S. et al. (2015) The RNA-binding protein rbfox1 regulates splicing required for skeletal muscle structure and function. Hum. Mol. Genet., 24, 2360-2374.
    • (2015) Hum. Mol. Genet. , vol.24 , pp. 2360-2374
    • Pedrotti, S.1
  • 12
  • 13
    • 84906791713 scopus 로고    scopus 로고
    • Rbfox2-coordinated alternative splicing of mef2d and rock2 controls myoblast fusion during myogenesis
    • Singh, R.K. et al. (2014) Rbfox2-coordinated alternative splicing of mef2d and rock2 controls myoblast fusion during myogenesis. Mol. Cell, 55, 592-603.
    • (2014) Mol. Cell , vol.55 , pp. 592-603
    • Singh, R.K.1
  • 14
    • 84947984588 scopus 로고    scopus 로고
    • Convergence of acquired mutations and alternative splicing of CD19 enables resistance to CART-19 immunotherapy
    • Sotillo, E. et al. (2015) Convergence of acquired mutations and alternative splicing of CD19 enables resistance to CART-19 immunotherapy. Cancer Discov.
    • (2015) Cancer Discov
    • Sotillo, E.1
  • 15
    • 84904163933 scopus 로고    scopus 로고
    • Dropout: A simple way to prevent neural networks from overfitting
    • Srivastava, N. et al. (2014) Dropout: A simple way to prevent neural networks from overfitting. J. Mach. Learn. Res., 15, 1929-1958.
    • (2014) J. Mach. Learn. Res. , vol.15 , pp. 1929-1958
    • Srivastava, N.1
  • 16
    • 84962544731 scopus 로고    scopus 로고
    • A new view of transcriptome complexity and regulation through the lens of local splicing variations
    • Vaquero-Garcia, J. et al. (2016) A new view of transcriptome complexity and regulation through the lens of local splicing variations. eLife, 5, e11752.
    • (2016) ELife , vol.5 , pp. e11752
    • Vaquero-Garcia, J.1
  • 17
    • 56549101959 scopus 로고    scopus 로고
    • Alternative isoform regulation in human tissue tran-scriptomes
    • Wang, E.T. et al. (2008) Alternative isoform regulation in human tissue tran-scriptomes. Nature, 456, 470-476.
    • (2008) Nature , vol.456 , pp. 470-476
    • Wang, E.T.1
  • 18
    • 80052766045 scopus 로고    scopus 로고
    • Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context
    • Xiong, H. et al. (2011) Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context. Bioinformatics, 27, 2554-2562.
    • (2011) Bioinformatics , vol.27 , pp. 2554-2562
    • Xiong, H.1
  • 19
    • 84923276179 scopus 로고    scopus 로고
    • The human splicing code reveals new insights into the genetic determinants of disease
    • Xiong, H.Y. et al. (2015) The human splicing code reveals new insights into the genetic determinants of disease. Science, 347, 1254806.
    • (2015) Science , vol.347 , pp. 1254806
    • Xiong, H.Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.