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Volumn 206, Issue 3, 2017, Pages 1611-1619

Safeguarding our genetic resources with libraries of doubled-haploid lines

Author keywords

Allelic diversity; Genetic load; Haploidy linkage disequilibrium; Maize

Indexed keywords

ARTICLE; BUGARD; COMPARATIVE STUDY; CONSERVATIONAL SEED BANK; CONTROLLED STUDY; CROP IMPROVEMENT; DOUBLED HAPLOID LINE; GELBER BADISCHER; GENE FREQUENCY; GENE LIBRARY; GENETIC LOAD; GENETIC RESOURCE; GENETIC VARIABILITY; GENOTYPE; GERMPLASM; HETEROZYGOTE; LANDRACE; MAIZE; NONHUMAN; PLANT CHROMOSOME; PLANT GENETICS; PLANT GENOME; PRIORITY JOURNAL; QUANTITATIVE TRAIT; RHEINTHALER; SCHINDELMEISER; STRENZFELDER; ALLELE; GENE LINKAGE DISEQUILIBRIUM; GENETIC POLYMORPHISM; GENETICS; HAPLOIDY; NUCLEIC ACID DATABASE; PLANT BREEDING; PROCEDURES;

EID: 85021901433     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.115.186205     Document Type: Article
Times cited : (23)

References (48)
  • 1
    • 34447324105 scopus 로고    scopus 로고
    • GenABEL: An R library for genome-wide association analysis
    • Aulchenko, Y. S., S. Ripke, A. Isaacs, and C. M. van Duijn, 2007 GenABEL: an R library for genome-wide association analysis. Bioinformatics 23: 1294-1296.
    • (2007) Bioinformatics , vol.23 , pp. 1294-1296
    • Aulchenko, Y.S.1    Ripke, S.2    Isaacs, A.3    Van Duijn, C.M.4
  • 3
    • 84962910713 scopus 로고    scopus 로고
    • A proposal regarding best practices for validating the identity of genetic stocks and the effects of genetic variants
    • Bergelson, J., E. S. Buckler, J. R. Ecker, M. Nordborg, and D. Weigel, 2016 A proposal regarding best practices for validating the identity of genetic stocks and the effects of genetic variants. Plant Cell 28: 606-609.
    • (2016) Plant Cell , vol.28 , pp. 606-609
    • Bergelson, J.1    Buckler, E.S.2    Ecker, J.R.3    Nordborg, M.4    Weigel, D.5
  • 4
    • 84903145392 scopus 로고    scopus 로고
    • Breeding potential of European flint maize landraces evaluated by their testcross performance
    • Böhm, J., W. Schipprack, V. Mirdita, H. F. Utz, and A. E. Melchinger, 2014 Breeding potential of European flint maize landraces evaluated by their testcross performance. Crop Sci. 54: 1665-1672.
    • (2014) Crop Sci , vol.54 , pp. 1665-1672
    • Böhm, J.1    Schipprack, W.2    Mirdita, V.3    Utz, H.F.4    Melchinger, A.E.5
  • 5
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for wholegenome association studies by use of localized haplotype clustering
    • Browning, S. R., and B. L. Browning, 2007 Rapid and accurate haplotype phasing and missing-data inference for wholegenome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81: 1084-1097.
    • (2007) Am. J. Hum. Genet , vol.81 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 6
    • 0344668768 scopus 로고    scopus 로고
    • Molecular studies on genetic integrity of open-pollinating species rye (Secale cereale L.) after long-term genebank maintenance
    • Chebotar, S., M. S. Röder, V. Korzun, B. Saal, W. E. Weber et al., 2003 Molecular studies on genetic integrity of open-pollinating species rye (Secale cereale L.) after long-term genebank maintenance. Theor. Appl. Genet. 107: 1469-1476.
    • (2003) Theor. Appl. Genet , vol.107 , pp. 1469-1476
    • Chebotar, S.1    Röder, M.S.2    Korzun, V.3    Saal, B.4    Weber, W.E.5
  • 8
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier, L., and H. E. L. Lischer, 2010 Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10: 564-567.
    • (2010) Mol. Ecol. Resour , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 11
    • 82955201636 scopus 로고    scopus 로고
    • A large maize (Zea mays L.) SNP genotyping array: Development and germplasm genotyping and genetic mapping to compare with the B73 reference genome
    • Ganal, M. W., G. Durstewitz, A. Polley, A. Bérard, E. S. Buckler et al., 2011 A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping and genetic mapping to compare with the B73 reference genome. PLoS One 6: e28334.
    • (2011) Plos One , vol.6
    • Ganal, M.W.1    Durstewitz, G.2    Polley, A.3    Bérard, A.4    Buckler, E.S.5
  • 12
    • 85013466633 scopus 로고    scopus 로고
    • Loss of pollen-specific phospholipase NOT LIKE DAD triggers gynogenesis in maize
    • Gilles, L. M., A. Khaled, J.-B. Laffaire, S. Chaignon, G. Gendrot et al., 2017 Loss of pollen-specific phospholipase NOT LIKE DAD triggers gynogenesis in maize. EMBO J. 36: 707-717.
    • (2017) EMBO J , vol.36 , pp. 707-717
    • Gilles, L.M.1    Khaled, A.2    Laffaire, J.-B.3    Chaignon, S.4    Gendrot, G.5
  • 13
    • 84955679325 scopus 로고    scopus 로고
    • Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations
    • Gorjanc, G., J. Jenko, S. J. Hearne, and J. M. Hickey, 2016 Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations. BMC Genomics 17: 30.
    • (2016) BMC Genomics , vol.17 , pp. 30
    • Gorjanc, G.1    Jenko, J.2    Hearne, S.J.3    Hickey, J.M.4
  • 15
    • 84956693233 scopus 로고    scopus 로고
    • Choice of models for QTL mapping with multiple families and design of the training set for prediction of Fusarium resistance traits in maize
    • Han, S., H. F. Utz, W. Liu, T. A. Schrag, M. Stange et al., 2016 Choice of models for QTL mapping with multiple families and design of the training set for prediction of Fusarium resistance traits in maize. Theor. Appl. Genet. 129: 431-444.
    • (2016) Theor. Appl. Genet , vol.129 , pp. 431-444
    • Han, S.1    Utz, H.F.2    Liu, W.3    Schrag, T.A.4    Stange, M.5
  • 16
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill, W. G., and A. Robertson, 1968 Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38: 226-231.
    • (1968) Theor. Appl. Genet , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 18
    • 67349176068 scopus 로고    scopus 로고
    • Genetics in geographically structured populations: Defining, estimating and interpreting FST
    • Holsinger, K. E., and B. S. Weir, 2009 Genetics in geographically structured populations: defining, estimating and interpreting FST. Nat. Rev. Genet. 10: 639-650.
    • (2009) Nat. Rev. Genet , vol.10 , pp. 639-650
    • Holsinger, K.E.1    Weir, B.S.2
  • 19
    • 84979939240 scopus 로고    scopus 로고
    • The genetic basis of haploid induction in maize identified with a novel genome-wide association method
    • Hu, H., T. A. Schrag, R. Peis, S. Unterseer, W. Schipprack et al., 2016 The genetic basis of haploid induction in maize identified with a novel genome-wide association method. Genetics 202: 1267-1276.
    • (2016) Genetics , vol.202 , pp. 1267-1276
    • Hu, H.1    Schrag, T.A.2    Peis, R.3    Unterseer, S.4    Schipprack, W.5
  • 20
    • 85016140376 scopus 로고    scopus 로고
    • MATRILINEAL, a sperm-specific phospholipase, triggers maize haploid induction
    • Kelliher, T., D. Starr, L. Richbourg, S. Chintamanani, B. Delzer et al., 2017 MATRILINEAL, a sperm-specific phospholipase, triggers maize haploid induction. Nature 542: 105-109.
    • (2017) Nature , vol.542 , pp. 105-109
    • Kelliher, T.1    Starr, D.2    Richbourg, L.3    Chintamanani, S.4    Delzer, B.5
  • 21
    • 0035490936 scopus 로고    scopus 로고
    • Green revolution: The way forward
    • Khush, G. S., 2001 Green revolution: the way forward. Nat. Rev. Genet. 2: 815-822.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 815-822
    • Khush, G.S.1
  • 22
    • 85014544987 scopus 로고    scopus 로고
    • A 4-bp insertion at ZmPLA1 encoding a putative phospholipase A generates haploid induction in maize
    • Liu, C., X. Li, D. Meng, Y. Zhong, C. Chen et al., 2017 A 4-bp insertion at ZmPLA1 encoding a putative phospholipase A generates haploid induction in maize. Mol. Plant 10: 520-522.
    • (2017) Mol. Plant , vol.10 , pp. 520-522
    • Liu, C.1    Li, X.2    Meng, D.3    Zhong, Y.4    Chen, C.5
  • 24
    • 84880105916 scopus 로고    scopus 로고
    • Rapid and accurate identification of in vivoinduced haploid seeds based on oil content in maize
    • Melchinger, A. E., W. Schipprack, T. Würschum, S. Chen, and F. Technow, 2013 Rapid and accurate identification of in vivoinduced haploid seeds based on oil content in maize. Sci. Rep. 3: 02129.
    • (2013) Sci. Rep , vol.3 , pp. 02129
    • Melchinger, A.E.1    Schipprack, W.2    Würschum, T.3    Chen, S.4    Technow, F.5
  • 25
    • 84892716897 scopus 로고    scopus 로고
    • The pattern and distribution of deleterious mutations in maize
    • Mezmouk, S., and J. Ross-Ibarra, 2014 The pattern and distribution of deleterious mutations in maize. G3 (Bethesda) 4: 163-171.
    • (2014) G3 (Bethesda) , vol.4 , pp. 163-171
    • Mezmouk, S.1    Ross-Ibarra, J.2
  • 26
    • 84875170310 scopus 로고    scopus 로고
    • Haploids and doubled haploids in plant breeding
    • edited by I. Abdurakhmonov. InTech, Croatia
    • Murovec, J., and B. Bohanec, 2012 Haploids and doubled haploids in plant breeding, pp. 87-106 in Plant Breeding, edited by I. Abdurakhmonov. InTech, Croatia.
    • (2012) Plant Breeding , pp. 87-106
    • Murovec, J.1    Bohanec, B.2
  • 27
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray, M. G., and W. F. Thompson, 1980 Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4326.
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4326
    • Murray, M.G.1    Thompson, W.F.2
  • 28
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei, M., 1973 Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323.
    • (1973) Proc. Natl. Acad. Sci. USA , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 29
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis, E., J. Claude, and K. Strimmer, 2004 APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 31
    • 84865997757 scopus 로고    scopus 로고
    • Production of haploids and doubled haploids in maize
    • Ed. 3, edited by V. M. Loyola-Vargas, and N. Ochoa-Alejo. Humana Press, Totowa
    • Prigge, V., and A. E. Melchinger, 2012 Production of haploids and doubled haploids in maize, pp. 161-172 in Plant Cell Culture Protocols, Methods in Molecular Biology, Ed. 3, edited by V. M. Loyola-Vargas, and N. Ochoa-Alejo. Humana Press, Totowa.
    • (2012) Plant Cell Culture Protocols, Methods in Molecular Biology , pp. 161-172
    • Prigge, V.1    Melchinger, A.E.2
  • 32
    • 77950233349 scopus 로고    scopus 로고
    • Haploid plants produced by centromere-mediated genome elimination
    • Ravi, M., and S. W. L. Chan, 2010 Haploid plants produced by centromere-mediated genome elimination. Nature 464: 615-619.
    • (2010) Nature , vol.464 , pp. 615-619
    • Ravi, M.1    Chan, S.W.L.2
  • 34
    • 0000413758 scopus 로고
    • Measures of similarities and genetics distances
    • edited by M. R. Wheeler. The University of Texas at Austin, Austin, TX
    • Rogers, J. S., 1972 Measures of similarities and genetics distances, pp. 145-153 in Studies in Genetics VII, edited by M. R. Wheeler. The University of Texas at Austin, Austin, TX.
    • (1972) Studies in Genetics VII , pp. 145-153
    • Rogers, J.S.1
  • 35
    • 0034104722 scopus 로고    scopus 로고
    • Isozymatic and morphological diversity in the races of maize of Mexico
    • Sanchez G., J. J., M. M. Goodman, and C. W. Stuber, 2000 Isozymatic and morphological diversity in the races of maize of Mexico. Econ. Bot. 54: 43-59.
    • (2000) Econ. Bot , vol.54 , pp. 43-59
    • Sanchez, G.1    Goodman, M.M.2    Stuber, C.W.3
  • 38
    • 84951209506 scopus 로고    scopus 로고
    • Mining natural variation for maize improvement: Selection on phenotypes and genes
    • edited by R. Tuberosa, A. Graner, and E. Frison. Springer, Netherlands
    • Sood, S., S. Flint-Garcia, M. C. Willcox, and J. B. Holland, 2014 Mining natural variation for maize improvement: selection on phenotypes and genes, pp. 617-640 in Genomics of Plant Genetic Resources, edited by R. Tuberosa, A. Graner, and E. Frison. Springer, Netherlands.
    • (2014) Genomics of Plant Genetic Resources , pp. 617-640
    • Sood, S.1    Flint-Garcia, S.2    Willcox, M.C.3    Holland, J.B.4
  • 39
    • 71249100887 scopus 로고
    • Gamete selection in corn breeding
    • Stadler, L. J., 1944 Gamete selection in corn breeding. J. Am. Soc. Agron. 36: 988-989.
    • (1944) J. Am. Soc. Agron , vol.36 , pp. 988-989
    • Stadler, L.J.1
  • 40
    • 84883556287 scopus 로고    scopus 로고
    • Association mapping for chilling tolerance in elite flint and dent maize inbred lines evaluated in growth chamber and field experiments
    • Strigens, A., N. M. Freitag, X. Gilbert, C. Grieder, C. Riedelsheimer et al., 2013a Association mapping for chilling tolerance in elite flint and dent maize inbred lines evaluated in growth chamber and field experiments. Plant Cell Environ. 36: 1871-1887.
    • (2013) Plant Cell Environ , vol.36 , pp. 1871-1887
    • Strigens, A.1    Freitag, N.M.2    Gilbert, X.3    Grieder, C.4    Riedelsheimer, C.5
  • 41
    • 84874317282 scopus 로고    scopus 로고
    • Unlocking the genetic diversity of maize landraces with doubled haploids opens new avenues for breeding
    • Strigens, A., W. Schipprack, J. C. Reif, and A. E. Melchinger, 2013b Unlocking the genetic diversity of maize landraces with doubled haploids opens new avenues for breeding. PLoS One 8: e57234.
    • (2013) Plos One , vol.8
    • Strigens, A.1    Schipprack, W.2    Reif, J.C.3    Melchinger, A.E.4
  • 43
    • 84908001372 scopus 로고    scopus 로고
    • A powerful tool for genome analysis in maize: Development and evaluation of the high density 600 k SNP genotyping array
    • Unterseer, S., E. Bauer, G. Haberer, M. Seidel, C. Knaak et al., 2014 A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics 15: 823.
    • (2014) BMC Genomics , vol.15 , pp. 823
    • Unterseer, S.1    Bauer, E.2    Haberer, G.3    Seidel, M.4    Knaak, C.5
  • 45
    • 0033427034 scopus 로고    scopus 로고
    • The role of genes of large effect on inbreeding depression in Mimulus guttatus
    • Willis, J. H., 1999 The role of genes of large effect on inbreeding depression in Mimulus guttatus. Evolution 53: 1678-1691.
    • (1999) Evolution , vol.53 , pp. 1678-1691
    • Willis, J.H.1
  • 46
    • 84865139666 scopus 로고    scopus 로고
    • 2012 synbreed: A framework for the analysis of genomic prediction data using R
    • Wimmer, V., T. Albrecht, H.-J. Auinger, and C.-C. Schön, 2012 synbreed: a framework for the analysis of genomic prediction data using R. Bioinformatics 28: 2086-2087.
    • Bioinformatics , vol.28 , pp. 2086-2087
    • Wimmer, V.1    Albrecht, T.2    Auinger, H.-J.3    Schön, C.-C.4
  • 47
    • 84989892190 scopus 로고    scopus 로고
    • Genomic prediction contributing to a promising global strategy to turbocharge gene banks
    • Yu, X., X. Li, T. Guo, C. Zhu, Y. Wu et al., 2016 Genomic prediction contributing to a promising global strategy to turbocharge gene banks. Nature Plants 2: 16150.
    • (2016) Nature Plants , vol.2 , pp. 16150
    • Yu, X.1    Li, X.2    Guo, T.3    Zhu, C.4    Wu, Y.5
  • 48
    • 84885192064 scopus 로고    scopus 로고
    • Fertilization and uniparental chromosome elimination during crosses with maize haploid inducers
    • Zhao, X., X. Xu, H. Xie, S. Chen, and W. Jin, 2013 Fertilization and uniparental chromosome elimination during crosses with maize haploid inducers. Plant Physiol. 163: 721-731.
    • (2013) Plant Physiol , vol.163 , pp. 721-731
    • Zhao, X.1    Xu, X.2    Xie, H.3    Chen, S.4    Jin, W.5


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