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Volumn 22, Issue 1, 2016, Pages 198-207

Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes

Author keywords

Biodiversity loss; Climate change; Colonization; Dispersal; Global change; Grassland; Metagenome; Neutral process; Niche; Nitrogen deposition

Indexed keywords

CLIMATE CHANGE; CLIMATE EFFECT; COLONIZATION; ENVIRONMENTAL CHANGE; GLOBAL CHANGE; MICROBIAL ACTIVITY; SPECIES RICHNESS; STOCHASTICITY;

EID: 84954150195     PISSN: 13541013     EISSN: 13652486     Source Type: Journal    
DOI: 10.1111/gcb.13080     Document Type: Article
Times cited : (99)

References (52)
  • 1
    • 29144445330 scopus 로고    scopus 로고
    • PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample
    • Acinas SG, Sarma-Rupavtarm R, Klepac-Ceraj V, Polz MF (2005) PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Applied and Environmental Microbiology, 71, 8966-8969.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8966-8969
    • Acinas, S.G.1    Sarma-Rupavtarm, R.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 2
    • 0003932892 scopus 로고    scopus 로고
    • ermutation dispersion: a FORTRAN computer program for permutational analysis of multivariate dispersions (for any two-factor ANOVA design) using permutation tests
    • Department of Statistics, University of Auckland, Aukland, New Zealand.
    • Anderson MJ (2004) Permutation dispersion: a FORTRAN computer program for permutational analysis of multivariate dispersions (for any two-factor ANOVA design) using permutation tests. Department of Statistics, University of Auckland, Aukland, New Zealand.
    • (2004)
    • Anderson, M.J.1
  • 4
    • 79955538533 scopus 로고    scopus 로고
    • Leaf quality, predators, and stochastic processes in the assembly of a diverse herbivore community
    • Barber NA, Marquis RJ (2011) Leaf quality, predators, and stochastic processes in the assembly of a diverse herbivore community. Ecology, 92, 699-708.
    • (2011) Ecology , vol.92 , pp. 699-708
    • Barber, N.A.1    Marquis, R.J.2
  • 5
    • 1542364165 scopus 로고    scopus 로고
    • zt: a software tool for simple and partial Mantel tests
    • Bonnet E, Peer YV (2002) zt: a software tool for simple and partial Mantel tests. Journal of Statistical Software, 7, 1-12.
    • (2002) Journal of Statistical Software , vol.7 , pp. 1-12
    • Bonnet, E.1    Peer, Y.V.2
  • 6
    • 0000286531 scopus 로고
    • An ordination of the upland forest communities of Southern Wisconsin
    • Bray JR, Curtis JT (1957) An ordination of the upland forest communities of Southern Wisconsin. Ecological Monograph, 27, 325-349.
    • (1957) Ecological Monograph , vol.27 , pp. 325-349
    • Bray, J.R.1    Curtis, J.T.2
  • 8
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7, 335-336.
    • (2010) Nature Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 10
    • 80052044392 scopus 로고    scopus 로고
    • Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale
    • Caruso T, Chan Y-K, Lacap DC, Lau MCY, McKay CP, Pointing SB (2011) Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale. The ISME Journal, 5, 1406-1413.
    • (2011) The ISME Journal , vol.5 , pp. 1406-1413
    • Caruso, T.1    Chan, Y.-K.2    Lacap, D.C.3    Lau, M.C.Y.4    McKay, C.P.5    Pointing, S.B.6
  • 11
    • 77953577612 scopus 로고    scopus 로고
    • Stochastic community assembly causes higher biodiversity in more productive environments
    • Chase JM (2010) Stochastic community assembly causes higher biodiversity in more productive environments. Science, 328, 1388-1391.
    • (2010) Science , vol.328 , pp. 1388-1391
    • Chase, J.M.1
  • 12
    • 77149148775 scopus 로고    scopus 로고
    • Relative roles of niche and neutral processes in structuring a soil microbial community
    • Dumbrell AJ, Nelson M, Helgason T, Dytham C, Fitter AH (2010) Relative roles of niche and neutral processes in structuring a soil microbial community. The ISME Journal, 4, 337-345.
    • (2010) The ISME Journal , vol.4 , pp. 337-345
    • Dumbrell, A.J.1    Nelson, M.2    Helgason, T.3    Dytham, C.4    Fitter, A.H.5
  • 13
    • 74049111308 scopus 로고    scopus 로고
    • Changes in species richness and composition in European acidic grasslands over the past 70 years: the contribution of cumulative atmospheric nitrogen deposition
    • Duprè C, Stevens CJ, Ranke T, Bleeker A (2010) Changes in species richness and composition in European acidic grasslands over the past 70 years: the contribution of cumulative atmospheric nitrogen deposition. Global Change Biology, 16, 344-357.
    • (2010) Global Change Biology , vol.16 , pp. 344-357
    • Duprè, C.1    Stevens, C.J.2    Ranke, T.3    Bleeker, A.4
  • 14
    • 44449137093 scopus 로고    scopus 로고
    • The microbial engines that drive earth's biogeochemical cycles
    • Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive earth's biogeochemical cycles. Science, 320, 1034-1039.
    • (2008) Science , vol.320 , pp. 1034-1039
    • Falkowski, P.G.1    Fenchel, T.2    Delong, E.F.3
  • 15
    • 84878333618 scopus 로고    scopus 로고
    • Changes in assembly processes in soil bacterial communities following a wildfire disturbance
    • Ferrenberg S, O'Neill SP, Knelman JE et al. (2013) Changes in assembly processes in soil bacterial communities following a wildfire disturbance. The ISME Journal, 7, 1102-1111.
    • (2013) The ISME Journal , vol.7 , pp. 1102-1111
    • Ferrenberg, S.1    O'Neill, S.P.2    Knelman, J.E.3
  • 17
    • 84887301559 scopus 로고    scopus 로고
    • Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States
    • Fierer N, Ladau J, Clemente JC et al. (2013) Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States. Science, 342, 621-624.
    • (2013) Science , vol.342 , pp. 621-624
    • Fierer, N.1    Ladau, J.2    Clemente, J.C.3
  • 18
    • 28644448010 scopus 로고    scopus 로고
    • Species divergence and trait convergence in experimental plant community assembly
    • Fukami T, Bezemer TM, Mortimer SR, Van der Putten WH (2005) Species divergence and trait convergence in experimental plant community assembly. Ecology Letters, 8, 1283-1290.
    • (2005) Ecology Letters , vol.8 , pp. 1283-1290
    • Fukami, T.1    Bezemer, T.M.2    Mortimer, S.R.3    Van der Putten, W.H.4
  • 20
    • 40249113897 scopus 로고    scopus 로고
    • Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?
    • Ge Y, He J, Zhu Y et al. (2008) Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies? The ISME Journal, 2, 254-264.
    • (2008) The ISME Journal , vol.2 , pp. 254-264
    • Ge, Y.1    He, J.2    Zhu, Y.3
  • 24
    • 37049178830 scopus 로고
    • Tree dispersion, abundance and diversity in a tropical dry forest
    • Hubbell SP (1979) Tree dispersion, abundance and diversity in a tropical dry forest. Science, 203, 1299-1309.
    • (1979) Science , vol.203 , pp. 1299-1309
    • Hubbell, S.P.1
  • 27
    • 0002073068 scopus 로고
    • Giardia: a missing link between prokaryotes and eukaryotes
    • Kabnick KS, Peattie DA (1991) Giardia: a missing link between prokaryotes and eukaryotes. American Scientist, 79, 34-43.
    • (1991) American Scientist , vol.79 , pp. 34-43
    • Kabnick, K.S.1    Peattie, D.A.2
  • 28
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Research, 28, 27-30.
    • (2000) Nucleic Acids Research , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 29
    • 84907221036 scopus 로고    scopus 로고
    • Temperature sensitivity of soil respiration rates enhanced by microbial community response
    • Karhu K, Auffret MD, Dungait JAJ et al. (2014) Temperature sensitivity of soil respiration rates enhanced by microbial community response. Nature, 513, 81-84.
    • (2014) Nature , vol.513 , pp. 81-84
    • Karhu, K.1    Auffret, M.D.2    Dungait, J.A.J.3
  • 30
    • 80053134216 scopus 로고    scopus 로고
    • Disentangling the drivers of β diversity along latitudinal and elevational gradients
    • Kraft NJB, Comita LS, Chase JM et al. (2011) Disentangling the drivers of β diversity along latitudinal and elevational gradients. Science, 333, 1755-1758.
    • (2011) Science , vol.333 , pp. 1755-1758
    • Kraft, N.J.B.1    Comita, L.S.2    Chase, J.M.3
  • 31
    • 83455224377 scopus 로고    scopus 로고
    • 454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities
    • Lekberg Y, Schnoor T, KjØller R et al. (2012) 454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities. Journal of Ecology, 100, 151-160.
    • (2012) Journal of Ecology , vol.100 , pp. 151-160
    • Lekberg, Y.1    Schnoor, T.2    KjØller, R.3
  • 32
    • 0002302962 scopus 로고
    • The vegetation of the Xilin River basin and its utilization
    • Research on Grassland Ecosystem No. 3. Science Press, Beijing.
    • Li B, Yong SP, Li ZH (1988) The vegetation of the Xilin River basin and its utilization. In: Inner Mongolia Grassland Ecosystem Research Station (ed), pp. 84-183. Research on Grassland Ecosystem No. 3. Science Press, Beijing.
    • (1988) Inner Mongolia Grassland Ecosystem Research Station , pp. 84-183
    • Li, B.1    Yong, S.P.2    Li, Z.H.3
  • 33
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R (2006) UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics, 7, 371-385.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371-385
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 34
    • 33947269742 scopus 로고    scopus 로고
    • Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities
    • Lozupone C, Hamady M, Kelley ST, Knight R (2007) Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities. Applied and Environmental Microbiology, 73, 1576-1585.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 1576-1585
    • Lozupone, C.1    Hamady, M.2    Kelley, S.T.3    Knight, R.4
  • 35
    • 83555174830 scopus 로고    scopus 로고
    • Deep metagenome sequencing illuminates permafrost response to thaw
    • Mackelprang R, Waldrop MP, DeAngelis KM et al. (2011) Deep metagenome sequencing illuminates permafrost response to thaw. Nature, 480, 368-371.
    • (2011) Nature , vol.480 , pp. 368-371
    • Mackelprang, R.1    Waldrop, M.P.2    DeAngelis, K.M.3
  • 36
    • 84903362470 scopus 로고    scopus 로고
    • Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities
    • Maignien L, DeForce EA, Chafee ME, Eren AM, Simmons SL (2014) Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities. mBio, 5, e00682-e00713.
    • (2014) mBio , vol.5 , pp. e00682-e00713
    • Maignien, L.1    DeForce, E.A.2    Chafee, M.E.3    Eren, A.M.4    Simmons, S.L.5
  • 38
    • 84906942808 scopus 로고    scopus 로고
    • Spore dispersal of basidiomycete fungi at the landscape scale is driven by stochastic and deterministic processes and generates variability in plant-fungal interactions
    • Peay KG, Bruns TD (2014) Spore dispersal of basidiomycete fungi at the landscape scale is driven by stochastic and deterministic processes and generates variability in plant-fungal interactions. New Phytologist, 204, 180-191.
    • (2014) New Phytologist , vol.204 , pp. 180-191
    • Peay, K.G.1    Bruns, T.D.2
  • 39
    • 78650321860 scopus 로고    scopus 로고
    • Evidence of dispersal limitation in soil microorganisms: isolation reduces species richness on mycorrhizal tree islands
    • Peay KG, Garbelotto M, Bruns TD (2010) Evidence of dispersal limitation in soil microorganisms: isolation reduces species richness on mycorrhizal tree islands. Ecology, 91, 3631-3640.
    • (2010) Ecology , vol.91 , pp. 3631-3640
    • Peay, K.G.1    Garbelotto, M.2    Bruns, T.D.3
  • 42
    • 84865345637 scopus 로고    scopus 로고
    • Stochastic and deterministic assembly processes in subsurface microbial communities
    • Stegen JC, Lin X, Konopka AE, Fredrickson JK (2012) Stochastic and deterministic assembly processes in subsurface microbial communities. The ISME Journal, 6, 1653-1664.
    • (2012) The ISME Journal , vol.6 , pp. 1653-1664
    • Stegen, J.C.1    Lin, X.2    Konopka, A.E.3    Fredrickson, J.K.4
  • 44
    • 33646748900 scopus 로고    scopus 로고
    • Dispersal limitations matter for microbial morphospecies
    • Telford RJ, Vandvik V, Birks HJB (2006) Dispersal limitations matter for microbial morphospecies. Science, 312, 1015.
    • (2006) Science , vol.312 , pp. 1015
    • Telford, R.J.1    Vandvik, V.2    Birks, H.J.B.3
  • 45
    • 0037052493 scopus 로고    scopus 로고
    • Prokaryotic diversity-magnitude, dynamics, and controlling factors
    • Torsvik V, Øvreås L, Thingstad TF (2002) Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science, 296, 1064-1066.
    • (2002) Science , vol.296 , pp. 1064-1066
    • Torsvik, V.1    Øvreås, L.2    Thingstad, T.F.3
  • 46
    • 0030612951 scopus 로고    scopus 로고
    • Human alteration of the global nitrogen cycle: sources and consequences
    • Vitousek PM, Aber CJ, Howarth RW et al. (1997) Human alteration of the global nitrogen cycle: sources and consequences. Ecological Application, 7, 737-750.
    • (1997) Ecological Application , vol.7 , pp. 737-750
    • Vitousek, P.M.1    Aber, C.J.2    Howarth, R.W.3
  • 47
    • 84880919285 scopus 로고    scopus 로고
    • Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
    • Wang J, Shen J, Wu Y et al. (2013) Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes. The ISME Journal, 7, 1310-1321.
    • (2013) The ISME Journal , vol.7 , pp. 1310-1321
    • Wang, J.1    Shen, J.2    Wu, Y.3
  • 49
    • 78651324365 scopus 로고    scopus 로고
    • Nitrogen deposition mediates the effects and importance of chance in changing biodiversity
    • Zhang X, Liu W, Bai Y, Zhang G, Han X (2011) Nitrogen deposition mediates the effects and importance of chance in changing biodiversity. Molecular Ecology, 20, 429-438.
    • (2011) Molecular Ecology , vol.20 , pp. 429-438
    • Zhang, X.1    Liu, W.2    Bai, Y.3    Zhang, G.4    Han, X.5
  • 50
    • 84885080764 scopus 로고    scopus 로고
    • Response of the abundance of key soil microbial nitrogen-cycling genes to multi-factorial global changes
    • Zhang X, Liu W, Schloter M et al. (2013) Response of the abundance of key soil microbial nitrogen-cycling genes to multi-factorial global changes. PLoS One, 8, e76500.
    • (2013) PLoS One , vol.8 , pp. e76500
    • Zhang, X.1    Liu, W.2    Schloter, M.3
  • 51
    • 0036136025 scopus 로고    scopus 로고
    • Spatial and resource factors influencing high microbial diversity in soil
    • Zhou J, Xia B, Treves DS et al. (2002) Spatial and resource factors influencing high microbial diversity in soil. Applied and Environmental Microbiology, 68, 326-334.
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 326-334
    • Zhou, J.1    Xia, B.2    Treves, D.S.3


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