Temperature regulates methane production through the function centralization of microbial community in anaerobic digestion

Bioresource Technology

Volumn 216, Issue , 2016, Pages 150-158

  Lin, Qiang ^a,b   De Vrieze, Jo ^c   He, Guihua ^a   Li, Xiangzhen ^a   Li, Jiabao ^a  

^a CHENGDU INSTITUTE OF BIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c GHENT UNIVERSITY   (Belgium)

Author keywords

Anaerobic digestion; Function centralization; Functional diversity; Metatranscriptome; Temperature

Indexed keywords

BIOGAS; METHANE; BIOFUEL; MANURE; VOLATILE FATTY ACID;

ANAEROBIC DIGESTION; ARTICLE; CELL ACTIVITY; CENTRALIZATION; GENE EXPRESSION; MANURE; METHANOGENESIS; MICROBIAL COMMUNITY; MICROBIAL GENE; NONHUMAN; PRIORITY JOURNAL; THERMOREGULATION; ANAEROBIC GROWTH; ANIMAL; BACTERIUM; BIOREACTOR; BIOSYNTHESIS; CLUSTER ANALYSIS; METABOLISM; MICROBIOLOGY; PHYLOGENY; PIG; TEMPERATURE;

ANAEROBIOSIS; ANIMALS; BACTERIA; BIOFUELS; BIOREACTORS; CLUSTER ANALYSIS; FATTY ACIDS, VOLATILE; MANURE; METABOLIC NETWORKS AND PATHWAYS; METHANE; PHYLOGENY; SWINE; TEMPERATURE;

EID: 84969780845     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2016.05.046     Document Type: Article

References (33)

1. APHA Standard Methods for the Examination of Water and Wastewater 1998, American Public Health Association, Washington, DC.
2. Bludman S.A., Vanriper K.A. Equation of state of an ideal ferni gas. Astrophys. J. 1977, 212(3):859-872.
3. Cui W.R., Chen L., Huang T., Gao Q., Jiang M., Zhang N., Zheng L.L., Feng K.Y., Cai Y.D., Wang H.W. Computationally identifying virulence factors based on KEGG pathways. Mol. BioSyst. 2013, 9(6):1447-1452.
4. de Menezes A., Clipson N., Doyle E. Comparative metatranscriptomic reveals widespread community responses during phenanthrene degradation in soil. Environ. Microbiol. 2012, 14(9):2577-2588.
5. De Vrieze J., Verstraete W., Boon N. Repeated pulse feeding induces functional stability in anaerobic digestion. Microb. Biotechnol. 2013, 6(4):414-424.
6. De Vrieze J., Saunders A.M., He Y., Fang J., Nielsen P.H., Verstraete W., Boon N. Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome. Water Res. 2015, 75:312-323.
7. Fredriksson N.J., Hermansson M., Wilen B.-M. Diversity and dynamics of Archaea in an activated sludge wastewater treatment plant. BMC Microbiol. 2012, 12.
8. Gannoun H., Omri I., Chouari R., Khelifi E., Keskes S., Godon J.J., Hamdi M., Sghir A., Bouallagui H. Microbial community structure associated with the high loading anaerobic codigestion of olive mill and abattoir wastewaters. Bioresour. Technol. 2016, 201:337-346.
9. Gifford S.M., Sharma S., Booth M., Moran M.A. Expression patterns reveal niche diversification in a marine microbial assemblage. ISME J. 2013, 7(2):281-298.
10. Gifford S.M., Sharma S., Moran M.A. Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community. Front. Microbiol. 2014, 5.
11. Gunnigle E., Nielsen J.L., Fuszard M., Botting C.H., Sheahan J., O'Flaherty V., Abram F. Functional responses and adaptation of mesophilic microbial communities to psychrophilic anaerobic digestion. FEMS Microbiol. Ecol. 2015, 91(12).
12. Hart S.C., Stark J.M., Davidson E.A., Firestone M.K. Nitrogen Mineralization, Immobilization, and Nitrification. Methods of Soil Analysis: Part 2-Microbiological and Biochemical Properties (methodsofsoilan2) 1994, 985-1018.
13. Higgins C.F. ABC transporters: physiology, structure and mechanism - an overview. Res. Microbiol. 2001, 152(3-4):205-210.
14. Labatut R.A., Angenent L.T., Scott N.R. Conventional mesophilic vs. thermophilic anaerobic digestion: a trade-off between performance and stability?. Water Res. 2014, 53:249-258.
15. Li X.K., Ma K.L., Meng L.W., Zhang J., Wang K. Performance and microbial community profiles in an anaerobic reactor treating with simulated PTA wastewater: from mesophilic to thermophilic temperature. Water Res. 2014, 61:57-66.
16. Lie T.J., Costa K.C., Lupa B., Korpole S., Whitman W.B., Leigh J.A. Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis. Proc. Natl. Acad. Sci. U.S.A. 2012, 109(38):15473-15478.
17. Ma Q., Qu Y.Y., Zhang X.W., Liu Z.Y., Li H.J., Zhang Z.J., Wang J.W., Shen W.L., Zhou J.T. Systematic investigation and microbial community profile of indole degradation processes in two aerobic activated sludge systems. Sci. Rep. 2015, 5:11.
18. Maestre F.T., Delgado-Baquerizo M., Jeffries T.C., Eldridge D.J., Ochoa V., Gozalo B., Quero J.L., Garcia-Gomez M., Gallardo A., Ulrich W., Bowker M.A., Arredondo T., Barraza-Zepeda C., Bran D., Florentino A., Gaitan J., Gutierrez J.R., Huber-Sannwald E., Jankju M., Mau R.L., Miriti M., Naseri K., Ospina A., Stavi I., Wang D.L., Woods N.N., Yuan X., Zaady E., Singh B.K. Increasing aridity reduces soil microbial diversity and abundance in global drylands. Proc. Natl. Acad. Sci. U.S.A. 2015, 112(51):15684-15689.
19. Marzorati M., Wittebolle L., Boon N., Daffonchio D., Verstraete W. How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ. Microbiol. 2008, 10(6):1571-1581.
20. Meyer F., Paarmann D., D'Souza M., Olson R., Glass E., Kubal M., Paczian T., Rodriguez A., Stevens R., Wilke A., Wilkening J., Edwards R. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008, 9(1):1-8.
21. Millares L., Perez-Brocal V., Ferrari R., Gallego M., Pomares X., Garcia-Nunez M., Monton C., Capilla S., Monso E., Moya A. Functional metagenomics of the bronchial microbiome in COPD. PLoS ONE 2015, 10(12):13.
22. Naeem S., Li S.B. Biodiversity enhances ecosystem reliability. Nature 1997, 390(6659):507-509.
23. Pap B., Gyoerkei A., Boboescu I.Z., Nagy I.K., Biro T., Kondorosi E., Maroti G. Temperature-dependent transformation of biogas-producing microbial communities points to the increased importance of hydrogenotrophic methanogenesis under thermophilic operation. Bioresour. Technol. 2015, 177:375-380.
24. Shi W.B., Moon C.D., Leahy S.C., Kang D.W., Froula J., Kittelmann S., Fan C., Deutsch S., Gagic D., Seedorf H., Kelly W.J., Atua R., Sang C., Soni P., Li D., Pinares-Patino C.S., McEwan J.C., Janssen P.H., Chen F., Visel A., Wang Z., Attwood G.T., Rubin E.M. Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome. Genome Res. 2014, 24(9):1517-1525.
25. Sun W.M., Yu G.W., Louie T., Liu T., Zhu C.S., Xue G., Gao P. From mesophilic to thermophilic digestion: the transitions of anaerobic bacterial, archaeal, and fungal community structures in sludge and manure samples. Appl. Microbiol. Biotechnol. 2015, 99(23):10271-10282.
26. Tian Z., Zhang Y., Li Y.Y., Chi Y.Z., Yang M. Rapid establishment of thermophilic anaerobic microbial community during the one-step startup of thermophilic anaerobic digestion from a mesophilic digester. Water Res. 2015, 69:9-19.
27. Vanwonterghem I., Jensen P.D., Ho D.P., Batstone D.J., Tyson G.W. Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques. Curr. Opin. Biotechnol. 2014, 27:55-64.
28. Weiland P. Biogas production: current state and perspectives. Appl. Microbiol. Biotechnol. 2010, 85(4):849-860.
29. Werner J.J., Knights D., Garcia M.L., Scalfone N.B., Smith S., Yarasheski K., Cummings T.A., Beers A.R., Knight R., Angenent L.T. Bacterial community structures are unique and resilient in full-scale bioenergy systems. Proc. Natl. Acad. Sci. U.S.A. 2011, 108(10):4158-4163.
30. Wilson C.A., Murthy S.M., Fang Y., Novak J.T. The effect of temperature on the performance and stability of thermophilic anaerobic digestion. Water Sci. Technol. 2008, 57(2):297-304.
31. Wittebolle L., Marzorati M., Clement L., Balloi A., Daffonchio D., Heylen K., De Vos P., Verstraete W., Boon N. Initial community evenness favours functionality under selective stress. Nature 2009, 458(7238):623-626.
32. Yu K., Zhang T. Metagenomic and metatranscriptomic analysis of microbial community structure and gene expression of activated sludge. PLoS ONE 2012, 7(5).
33. Zhang H.S., Chen X., Braithwaite D., He Z. Phylogenetic and metagenomic analyses of substrate-dependent bacterial temporal dynamics in microbial fuel cells. PLoS ONE 2014, 9(9):8.