Erratum: Auxin signaling through SCFTIR1/AFBsmediates feedback regulation of IAA biosynthesis (Bioscience, Biotechnology, and Biochemistry DOI: 10.1080/09168451.2017.1313694);Auxin signaling through SCFTIR1/AFBs mediates feedback regulation of IAA biosynthesis

Bioscience, Biotechnology and Biochemistry

Volumn 81, Issue 7, 2017, Pages 1320-1326

  Takato, Shin ^a   Kakei, Yusuke ^a   Mitsui, Marie ^a,b   Ishida, Yosuke ^a   Suzuki, Masashi ^a   Yamazaki, Chiaki ^a   Hayashi, Ken Ichiro ^c   Ishii, Takahiro ^d   Nakamura, Ayako ^a   Soeno, Kazuo ^d   Shimada, Yukihisa ^a,b  

^a YOKOHAMA CITY UNIVERSITY   (Japan)

^b RIKEN Center for Sustainable Resource Science   (Japan)

^c OKAYAMA UNIVERSITY OF SCIENCE   (Japan)

^d NATIONAL AGRICULTURAL RESEARCH CENTER FOR WESTERN REGION   (Japan)

Author keywords

Arabidopsis; Auxin; Feedback regulation

Indexed keywords

BIOCHEMISTRY; BIOSYNTHESIS; GENE EXPRESSION; ORGANIC ACIDS; POLYCYCLIC AROMATIC HYDROCARBONS; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS SEEDLINGS; AUXIN; BIOSYNTHESIS PATHWAYS; FEEDBACK REGULATION; INDOLE-3-ACETIC ACID; SIGNAL TRANSDUCTION PATHWAYS; SIGNALING PATHWAYS;

SIGNALING;

AFB2 PROTEIN, ARABIDOPSIS; AFB3 PROTEIN, ARABIDOPSIS; ARABIDOPSIS PROTEIN; AUXIN-RESPONSIVE PROTEIN IAA7, ARABIDOPSIS; AXR3 PROTEIN, ARABIDOPSIS; CARRIER PROTEIN; CELL SURFACE RECEPTOR; F BOX PROTEIN; INDOL-3-YL PYRUVIC ACID; INDOLE DERIVATIVE; INDOLEACETIC ACID; INDOLEACETIC ACID DERIVATIVE; MIXED FUNCTION OXIDASE; NUCLEAR PROTEIN; OXYGENASE; PHYTOHORMONE; TIR1 PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR; YUC PROTEIN, ARABIDOPSIS; YUCCA8 PROTEIN, ARABIDOPSIS;

ARABIDOPSIS; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHYSIOLOGICAL FEEDBACK; PLANT ROOT; SEEDLING; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CARRIER PROTEINS; F-BOX PROTEINS; FEEDBACK, PHYSIOLOGICAL; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; INDOLES; MIXED FUNCTION OXYGENASES; NUCLEAR PROTEINS; OXYGENASES; PLANT GROWTH REGULATORS; PLANT ROOTS; RECEPTORS, CELL SURFACE; SEEDLINGS; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

EID: 85021102712     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1093/bbb/zbab052     Document Type: Erratum

References (51)

1. Zhao Y. Auxin biosynthesis. Arab Book. 2014:e0173. DOI:10.1199/tab.0173
2. Novák O, Hényková E, Sairanen I, et al. Tissue-specific profiling of the Arabidopsis thaliana auxin metabolome. Plant J. 2012;72 (3):523-536.
3. Gray WM, Östin A, Sandberg G, et al. High temperature promotes auxin-mediated hypocotyl elongation in Arabidopsis. Proc Nat Acad Sci USA. 1998;95(12):7197-7202.
4. Shibasaki K, Uemura M, Tsurumi S, et al. Auxin response in Arabidopsis under cold stress: underlying molecular mechanisms. Plant Cell. 2009;21(12):3823-3838.
5. Kepinski S, Leyser O. The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature. 2005;435(7041):446-451.
6. Dharmasiri N, Dharmasiri S, Estelle M. The F-box protein TIR1 is an auxin receptor. Nature. 2005;435(7041):441-445.
7. Tan X, Calderon-Villalobos LIA, Sharon M, et al. Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature. 2007;446 (7136):640-645.
8. Takahashi K, Hayashi K, Kinoshita T. Auxin activates the plasma membrane H+-ATPase by phosphorylation during hypocotyl elongation in Arabidopsis. Plant Physiol. 2012;159(2): 632-641.
9. Gray WM, Kepinski S, Rouse D, et al. Auxin regulates SCF (TIR1)-dependent degradation of AUX/IAA proteins. Nature. 2001;414(6861):271-276.
10. Ulmasov T, Liu ZB, Hagen G, et al. Composite structure of auxin response elements. Plant Cell. 1995;7(10):1611-1623.
11. Hagen G, Guilfoyle T. Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol Biol. 2002;49(3-4): 373-385.
12. Abel S, Theologis A. Early genes and auxin action. Plant Physiol. 1996;111(1):9-17.
13. Stirnberg P, Chatfield SP, Leyser HMO. AXR1 acts after lateral bud formation to inhibit lateral bud growth in Arabidopsis. Plant Physiol. 1999;121(3):839-847.
14. De Rybel B, Audenaert D, Beeckman T, et al. The past, present, and future of chemical biology in auxin research. ACS Chem Biol. 2009;4(12):987-998.
15. Ma Q, Robert S. Auxin biology revealed by small molecules. Physiol Plant. 2014;151(1):25-42.
16. Wilson AK, Pickett FB, Turner JC, et al. A dominant mutation in Arabidopsis confers resistance to auxin, ethylene and abscisic acid. Mol Gen Genet MGG. 1990;222(2-3):377-383.
17. Leyser HMO, Pickett FB, Dharmasiri S, et al. Mutations in the AXR3 gene of Arabidopsis result in altered auxin response including ectopic expression from the SAUR-AC1 promoter. Plant J. 1996;10(3):403-413.
18. Rouse D, Mackay P, Stirnberg P, et al. Changes in auxin response from mutations in an AUX/IAA gene. Science. 1998;279(5355):1371-1373.
19. Dharmasiri N, Dharmasiri S, Weijers D, et al. Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell. 2005;9(1):109-119.
20. Guilfoyle TJ. The PB1 domain in auxin response factor and Aux/IAA proteins: a versatile protein interaction module in the auxin response. Plant Cell. 2015;27(1):33-43.
21. Weijers D, Wagner D. Transcriptional responses to the auxin hormone. Annu Rev Plant Biol. 2016;67(1): null.
22. Wang B, Chu J, Yu T, et al. Tryptophan-independent auxin biosynthesis contributes to early embryogenesis in Arabidopsis. Proc Nat Acad Sci. 2015;112(15):4821-4826.
23. Mano Y, Nemoto K. The pathway of auxin biosynthesis in plants. J Exp Bot. 2012;63(8):2853-2872.
24. Ruiz Rosquete M, Barbez E, Kleine-Vehn J. Cellular auxin homeostasis: gatekeeping is housekeeping. Mol Plant. 2012;5(4): 772-786.
25. Ljung K. Auxin metabolism and homeostasis during plant development. Development. 2013;140(5):943-950.
26. Tivendale ND, Ross JJ, Cohen JD. The shifting paradigms of auxin biosynthesis. Trends Plant Sci. 2014;19(1):44-51.
27. Mashiguchi K, Tanaka K, Sakai T, et al. The main auxin biosynthesis pathway in Arabidopsis. Proc Nat Acad Sci. 2011;108 (45):18512-18517.
28. Won C, Shen X, Mashiguchi K, et al. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANS-FERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Nat Acad Sci. 2011;108(45):18518-18523.
29. Zhao Y. Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol Plant. 2012;5 (2):334-338.
30. Stepanova AN, Robertson-Hoyt J, Yun J, et al. TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell. 2008;133(1):177-191.
31. Tao Y, Ferrer J-L, Ljung K, et al. Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell. 2008;133(1):164-176.
32. Yamada M, Greenham K, Prigge MJ, et al. The TRANSPORT INHIBITOR RESPONSE2 gene is required for auxin synthesis and diverse aspects of plant development. Plant Physiol. 2009;151(1):168-179.
33. Zhao Y, Christensen SK, Fankhauser C, et al. A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science. 2001;291(5502):306-309.
34. Hentrich M, Böttcher C, Düchting P, et al. The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expression. Plant J. 2013;74(4):626-637.
35. Chen Q, Dai X, De-Paoli H, et al. Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots. Plant Cell Physiol. 2014;55(6):1072-1079.
36. Cheng Y, Dai X, Zhao Y. Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev. 2006;20 (13):1790-1799.
37. Lee M, Jung J-H, Han D-Y, et al. Activation of a flavin monooxygenase gene YUCCA7 enhances drought resistance in Arabidopsis. Planta. 2011;235(5):923-938.
38. Suzuki M, Yamazaki C, Mitsui M, et al. Transcriptional feedback regulation of YUCCA genes in response to auxin levels in Arabidopsis. Plant Cell Rep. 2015;34(8):1343-1352.
39. Kakei Y, Yamazaki C, Suzuki M, et al. Small molecule auxin inhibitors that target YUCCA are powerful tools for studying auxin function. Plant J. 2015;84(4):827-837.
40. Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods. 2001;25(4):402-408.
41. Karimi M, Inzé D, Depicker A. GATEWAY™ vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 2002;7(5):193-195.
42. Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998;16(6):735-743.
43. Hayashi K, Neve J, Hirose M, et al. Rational design of an auxin antagonist of the SCF TIR1 auxin receptor complex. ACS Chem Biol. 2012;7(3):590-598.
44. Pérez-Torres C-A, López-Bucio J, Cruz-Ramírez A, et al. Phosphate availability alters lateral root development in arabidopsis by modulating auxin sensitivity via a mechanism involving the TIR1 auxin receptor. Plant Cell. 2008;20(12):3258-3272.
45. Goh T, Kasahara H, Mimura T, et al. Multiple AUX/IAA-ARF modules regulate lateral root formation: the role of Arabidopsis SHY2/IAA3-mediated auxin signalling. Philos Trans R Soc B Biol Sci. 2012;367(1595):1461-1468.
46. Bargmann BOR, Vanneste S, Krouk G, et al. A map of cell type-specific auxin responses. Mol Syst Biol. 2013;9(1):688-688.
47. Sugawara S, Mashiguchi K, Tanaka K, et al. Distinct characteristics of indole-3-acetic acid and phenylacetic acid, two common auxins in plants. Plant Cell Physiol. 2015;56(8):1641-1654.
48. Woodward AW, Bartel B. Auxin: regulation, action, and interaction. Ann. Bot. 2005;95(5):707-735.
49. Cha J-Y, Kim W-Y, Kang SB, et al. A novel thiol-reductase activity of Arabidopsis YUC6 confers drought tolerance independently of auxin biosynthesis. Nat Commun. 2015;6:8041. DOI:10.1038/ncomms9041
50. Vragović K, Sela A, Friedlander-Shani L, et al. Translatome analyses capture of opposing tissue-specific brassinosteroid signals orchestrating root meristem differentiation. Proc Nat Acad Sci. 2015;112(3):923-928.
51. Swarup R, Perry P, Hagenbeek D, et al. Ethylene upregulates auxin biosynthesis in Arabidopsis seedlings to enhance inhibition of root cell elongation. Plant Cell. 2007;19(7):2186-2196.