Tissue-specific profiling of the Arabidopsis thaliana auxin metabolome

Plant Journal

Volumn 72, Issue 3, 2012, Pages 523-536

  Novák, Ondřej ^a   Hényková, Eva ^a,b   Sairanen, Ilkka ^a   Kowalczyk, Mariusz ^a,c   Pospíšil, Tomáš ^b   Ljung, Karin ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b PALACKÝ UNIVERSITY   (Czech Republic)

^c STATE RESEARCH INSTITUTE   (Poland)

Author keywords

Arabidopsis thaliana; auxin; biosynthesis; degradation; indole 3 acetic acid; metabolite profiling; technical advance

Indexed keywords

ARABIDOPSIS THALIANA; AUXIN; INDOLE-3-ACETIC ACID; METABOLITE PROFILING; TECHNICAL ADVANCES;

ACETIC ACID; BIOCHEMISTRY; BIOMOLECULES; BIOSYNTHESIS; DEGRADATION; HISTOLOGY; MASS SPECTROMETRY; METABOLITES; TISSUE;

PLANTS (BOTANY);

INDOLE DERIVATIVE; INDOLEACETIC ACID DERIVATIVE; INDOLEBUTYRIC ACID; PHYTOHORMONE;

ANTIBODY SPECIFICITY; ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; CHEMISTRY; GROWTH, DEVELOPMENT AND AGING; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; METABOLOME; METABOLOMICS; METHODOLOGY; MULTIVARIATE ANALYSIS; MUTATION; PLANT; PLANT ROOT; SEEDLING; SIGNAL TRANSDUCTION; TRANSGENIC PLANT; TRANSPORT AT THE CELLULAR LEVEL;

ARABIDOPSIS; BIOLOGICAL TRANSPORT; BIOSYNTHETIC PATHWAYS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; INDOLEACETIC ACIDS; INDOLES; MASS SPECTROMETRY; METABOLOME; METABOLOMICS; MULTIVARIATE ANALYSIS; MUTATION; ORGAN SPECIFICITY; PLANT GROWTH REGULATORS; PLANT ROOTS; PLANT SHOOTS; PLANTS, GENETICALLY MODIFIED; SEEDLING; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84868213276     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2012.05085.x     Document Type: Article

References (47)

1. Andersen, S.U., Buechel, S., Zhao, Z., Ljung, K., Novák, O., Busch, W., Schuster, C., and, Lohmann, J.U., (2008) Requirement of B2-type cyclin-dependent kinases for meristem integrity in Arabidopsis thaliana. Plant Cell, 20, 88-100.
2. Barkawi, L.S., Tam, Y.Y., Tillman, J.A., Pederson, B., Calio, J., Al-Amier, H., Emerick, M., Normanly, J., and, Cohen, J.D., (2008) A high-throughput method for the quantitative analysis of indole-3-acetic acid and other auxins from plant tissue. Anal. Biochem. 372, 177-188.
3. Barlier, I., Kowalczyk, M., Marchant, A., Ljung, K., Bhalerao, R., Bennett, M., Sandberg, G., and, Bellini, C., (2000) The SUR2 gene of Arabidopsis thaliana encodes the cytochrome P450 CYP83B1, a modulator of auxin homeostasis. Proc. Natl Acad. Sci. USA, 97, 14819-14824.
4. Benková, E., Ivanchenko, M.G., Friml, J., Shishkova, S., and, Dubrovsky, J.G., (2009) A morphogenetic trigger: is there an emerging concept in plant developmental biology? Trends Plant Sci. 14, 189-193.
5. Boerjan, W., Cervera, M.T., Delarue, M., Beeckman, T., Dewitte, W., Bellini, C., Caboche, M., Van Onckelen, H., Van Montagu, M., and, Inzé, D., (1995) Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction. Plant Cell. 7, 1405-1419.
6. Chen, K.-H., Miller, A.N., Patterson, G.W., and, Cohen, J.D., (1988) A rapid and simple procedure for purification of indole-3-acetic acid prior to GC-SIM-MS analysis. Plant Physiol. 86, 822-825.
7. Edlund, A., Eklöf, S., Sundberg, B., Moritz, T., and, Sandberg, G., (1995) A microscale technique for gas chromatography-mass spectrometry measurements of picogram amounts of indole-3-acetic acid in plant tissues. Plant Physiol. 108, 1043-1047.
8. Hirano, K., Nakajima, M., Asano, K., et al. (2007) The GID1-mediated gibberellin perception mechanism is conserved in the lycophyte Selaginella moellendorffii but not in the bryophyte Physcomitrella patens. Plant Cell, 19, 3058-3079.
9. Ilić, N., Magnus, V., Ostin, A., and, Sandberg, G., (1997) Stable-isotope labeled metabolites of the phytohormone, indole-3-acetic acid. J. Labelled Comp. Radiopharm. 39, 433-440.
10. Jones, S.E., DeMeo, J.S., Davies, N.W., Noonan, S.E., and, Ross, J.J., (2005) Stems of the Arabidopsis pin1-1 mutant are not deficient in free indole-3-acetic acid. Planta, 222, 530-534.
11. Kai, K., Horita, J., Wakasa, K., and, Miyagawa, H., (2007) Three oxidative metabolites of indole-3-acetic acid from Arabidopsis thaliana. Phytochemistry, 68, 1651-1663.
12. Kataoka, H., Sumida, A., Nishihata, N., and, Makita, M., (1995) Determination of aliphatic aldehydes as their thiazolidine derivatives in foods by gas chromatography with flame photometric detection. J. Chromatogr. A. 709, 303-311.
13. Kojima, M., Kamada-Nobusada, T., Komatsu, H., et al. (2009) Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. Plant Cell Physiol. 50, 1201-1214.
14. Kowalczyk, M., (2002) Metabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana. PhD thesis. Swedish University of Agricultural Sciences, Umeå, Sweden.
15. Kowalczyk, M., and, Sandberg, G., (2001) Quantitative analysis of indole-3-acetic acid metabolites in Arabidopsis. Plant Physiol. 127, 1845-1853.
16. Kriechbaumer, V., Wang, P., Hawes, C., and, Abell, B.M., (2012) Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation. Plant J. 70, 292-302.
17. Lehmann, T., Hoffmann, M., Hentrich, M., and, Pollmann, S., (2010) Indole-3-acetamide-dependent auxin biosynthesis: a widely distributed way of indole-3-acetic acid production? Eur. J. Cell Biol. 89, 895-905.
18. Leyser, O., (2010) The power of auxin in plants. Plant Physiol. 154, 501-505.
19. Ljung, K., Hull, A.K., Kowalczyk, M., Marchant, A., Celenza, J., Cohen, J.D., and, Sandberg, G., (2002) Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana. Plant Mol. Biol. 50, 309-332.
20. Ludwig-Müller, J., (2007) Indole-3-butyric acid synthesis in ecotypes and mutants of Arabidopsis thaliana under different growth conditions. J. Plant Physiol. 164, 47-59.
21. Ludwig-Müller, J., Vertocnik, A., and, Town, C.D., (2005) Analysis of indole-3-butyric acid-induced adventitious root formation on Arabidopsis stem segments. J. Exp. Bot. 56, 2095-2105.
22. Mashiguchi, K., Tanaka, K., Sakai, T., et al. (2011) The main auxin biosynthesis pathway in Arabidopsis. Proc. Natl Acad. Sci. USA, 108, 18512-18517.
23. Midttun, O., Hustad, S., and, Ueland, P.M., (2009) Quantitative profiling of biomarkers related to B-vitamin status, tryptophan metabolism and inflammation in human plasma by liquid chromatography/tandem mass spectrometry. Rapid Commun. Mass Spectrom. 23, 1371-1379.
24. Mikkelsen, M.D., Naur, P., and, Halkier, B.A., (2004) Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis. Plant J. 37, 770-777.
25. Miyake, T., and, Shibamoto, T., (1993) Quantitative analysis of acetaldehyde in foods and beverages. J. Agric. Food Chem. 41, 1968-1970.
26. Normanly, J., (2010) Approaching cellular and molecular resolution of auxin biosynthesis and metabolism. Cold Spring Harb. Perspect. Biol. 2, a001594.
27. Novák, O., Hauserová, E., Amakorová, P., Doležal, K., and, Strnad, M., (2008) Cytokinin profiling in plant tissues using ultra-performance liquid chromatography-electrospray tandem mass spectrometry. Phytochemistry, 69, 2214-2224.
28. Östin, A., Kowalczyk, M., Bhalerao, R.P., and, Sandberg, G., (1998) Metabolism of indole-3-acetic acid in Arabidopsis. Plant Physiol. 118, 285-296.
29. Petersson, S.V., Johansson, A.I., Kowalczyk, K., Makoveychuk, A., Wang, J.Y., Moritz, T., Grebe, M., Benfey, P.N., Sandberg, G., and, Ljung, K., (2009) An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis. Plant Cell, 21, 1659-1668.
30. Petrášek, J., and, Friml, J., (2009) Auxin transport routes in plant development. Development, 136, 2675-2688.
31. Quittenden, L.J., Davies, N.W., Smith, J.A., Molesworth, P.P., Tivendale, N.D., and, Ross, J.J., (2009) Auxin biosynthesis in pea: characterization of the tryptamine pathway. Plant Physiol. 151, 1130-1138.
32. Rittenberg, D., and, Foster, L., (1940) A new procedure for quantitative analysis by isotope dilution, with application to the determination of amino acids and fatty acids. J. Biol. Chem. 133, 727-744.
33. Sorefan, K., Girin, T., Liljegren, S.J., Ljung, K., Robles, P., Galván-Ampudia, C.S., Offringa, R., Friml, J., Yanofsky, M.F., and, Ostergaard, L., (2009) A regulated auxin minimum is required for seed dispersal in Arabidopsis. Nature, 459, 583-586.
34. Stepanova, A.N., Yun, J., Robles, L.M., Novak, O., He, W., Guo, H., Ljung, K., and, Alonso, J.M., (2011) The Arabidopsis YUCCA1 flavin monooxygenase functions in the indole-3-pyruvic acid branch of auxin biosynthesis. Plant Cell, 23, 3961-3973.
35. Strader, L.C., and, Bartel, B., (2011) Transport and metabolism of the endogenous auxin precursor indole-3-butyric acid. Mol. Plant. 4, 477-486.
36. Strader, L.C., Culler, A.H., Cohen, J.D., and, Bartel, B., (2010) Conversion of endogenous indole-3-butyric acid to indole-3-acetic acid drives cell expansion in Arabidopsis seedlings. Plant Physiol. 153, 1577-1586.
37. Strader, L.C., Wheeler, D.L., Christensen, S.E., Berens, J.C., Cohen, J.D., Rampey, R.A., and, Bartel, B., (2011) Multiple facets of Arabidopsis seedling development require indole-3-butyric acid-derived auxin. Plant Cell, 23, 984-999.
38. Sugawara, S., Hishiyama, S., Jikumaru, Y., Hanada, A., Nishimura, T., Koshiba, T., Zhao, Y., Kamiya, Y., and, Kasahara, H., (2009) Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis. Proc. Natl Acad. Sci. USA, 106, 5430-5435.
39. Sundberg, B., (1990) Influence of extraction solvent (buffer, methanol, acetone) and time on the quantification of indole-3-acetic acid in plants. Physiol. Plant. 78, 293-297.
40. Tam, Y.Y., and, Normanly, J., (1998) Determination of indole-3-pyruvic acid levels in Arabidopsis thaliana by gas chromatography-selected ion monitoring-mass spectrometry. J. Chromatogr. A. 800, 101-108.
41. Tam, Y.Y., Epstein, E., and, Normanly, J., (2000) Characterization of auxin conjugates in Arabidopsis. Low steady-state levels of indole-3-acetyl- aspartate, indole-3-acetyl-glutamate, and indole-3-acetyl-glucose. Plant Physiol. 123, 589-596.
42. Turečková, V., Novák, O., and, Strnad, M., (2009) Profiling ABA metabolites in Nicotiana tabacum L. leaves by ultra-performance liquid chromatography-electrospray tandem mass spectrometry. Talanta, 80, 390-399.
43. Tzin, V., and, Galili, G., (2010) The biosynthetic pathways for shikimate and aromatic amino acids in Arabidopsis thaliana. The Arabidopsis Book, 8, e0132.
44. van de Weert, M., Lagerwerf, F.M., Haverkamp, J., and, Heerma, W., (1998) Mass spectrometric analysis of oxidized tryptophan. J. Mass Spectrom. 33, 884-891.
45. Won, C., Shen, X., Mashiguchi, K., Zheng, Z., Dai, X., Cheng, Y., Kasahara, H., Kamiya, Y., Chory, J., and, Zhao, Y., (2011) Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc. Natl Acad. Sci. USA, 108, 18518-18523.
46. Zentella, R., Zhang, Z.L., Park, M., et al. (2007) Global analysis of DELLA direct targets in early gibberellin signaling in Arabidopsis. Plant Cell 19, 3037-3057.
47. Zhao, Y., Christensen, S.K., Fankhauser, C., Cashman, J.R., Cohen, J.D., Weigel, D., and, Chory, J., (2001) A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science, 291, 306-309.