-
1
-
-
78651339097
-
AGRIS: The arabidopsis gene regulatory information server, an update
-
PMID: 21059685
-
Yilmaz A, Mejia-Guerra MK, Kurz K, Liang X, Welch L, Grotewold E. AGRIS: The arabidopsis gene regulatory information server, an update. Nucleic Acids Res. 2011; 39: 1118-1122. https://doi.org/10.1093/nar/gkq1120 PMID: 21059685
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1118-1122
-
-
Yilmaz, A.1
Mejia-Guerra, M.K.2
Kurz, K.3
Liang, X.4
Welch, L.5
Grotewold, E.6
-
2
-
-
84964892288
-
HRGRN: A graph search-empowered integrative database of arabidopsis signaling transduction, metabolism and gene regulation networks
-
PMID: 26657893
-
Dai X, Li J, Liu T, Zhao PX. HRGRN: A graph search-empowered integrative database of arabidopsis signaling transduction, metabolism and gene regulation networks. Plant Cell Physiol. 2016; 57: e12. https://doi.org/10.1093/pcp/pcv200 PMID: 26657893
-
(2016)
Plant Cell Physiol.
, vol.57
, pp. e12
-
-
Dai, X.1
Li, J.2
Liu, T.3
Zhao, P.X.4
-
3
-
-
0037249498
-
The arabidopsis information resource (TAIR): A model organism database providing a centralized, curated gateway to arabidopsis biology, research materials and community
-
PMID: 12519987
-
Rhee SY. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res. 2003; 31: 224-228. https://doi.org/10.1093/nar/gkg076 PMID: 12519987
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 224-228
-
-
Rhee, S.Y.1
-
4
-
-
84990817914
-
New BAR tools for mining expression data and exploring Cis-elements in arabidopsis thaliana
-
PMID: 27401965
-
Austin RS, Hiu S, Waese J, Ierullo M, Pasha A, Wang TT, et al. New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana. Plant J. 2016; 88: 490-504. https://doi.org/10.1111/tpj.13261 PMID: 27401965
-
(2016)
Plant J.
, vol.88
, pp. 490-504
-
-
Austin, R.S.1
Hiu, S.2
Waese, J.3
Ierullo, M.4
Pasha, A.5
Wang, T.T.6
-
5
-
-
84956576343
-
Arabidopsis motif scanner
-
BMC Bioinformatics; PMID: 26817596
-
Mele G. Arabidopsis Motif Scanner. BMC Bioinformatics. BMC Bioinformatics; 2016; 17: 50. https://doi.org/10.1186/s12859-016-0896-x PMID: 26817596
-
(2016)
BMC Bioinformatics
, vol.17
, pp. 50
-
-
Mele, G.1
-
6
-
-
35348816687
-
A predicted interactome for arabidopsis
-
PMID: 17675552
-
Geisler-Lee J, O'Toole N, Ammar R, Provart NJ, Millar a H, Geisler M. A Predicted Interactome for Arabidopsis. Plant Physiol. 2007; 145: 317-329. https://doi.org/10.1104/pp.107.103465 PMID: 17675552
-
(2007)
Plant Physiol.
, vol.145
, pp. 317-329
-
-
Geisler-Lee, J.1
O'Toole, N.2
Ammar, R.3
Provart, N.J.4
Millar, A.H.5
Geisler, M.6
-
7
-
-
73949091601
-
Manipulating large-scale arabidopsis microarray expression data: Identifying dominant expression patterns and biological process enrichment
-
In: Belostotsky D, editor. Humana Press
-
Orlando DA, Brady SM, Koch JD, Dinneny R, Benfey PN. Manipulating Large-Scale Arabidopsis Microarray Expression Data: Identifying Dominant Expression Patterns and Biological Process Enrichment. In: Belostotsky D, editor. Plant Systems Biology. Humana Press; 2009. pp. 57-77.
-
(2009)
Plant Systems Biology
, pp. 57-77
-
-
Orlando, D.A.1
Brady, S.M.2
Koch, J.D.3
Dinneny, R.4
Benfey, P.N.5
-
8
-
-
84873135198
-
Comprehensive developmental profiles of gene activity in regions and subregions of the arabidopsis seed
-
2013/01/16. PMID: 23319655
-
Belmonte MF, Kirkbride RC, Stone SL, Pelletier JM, Bui AQ, Yeung EC, et al. Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proc Natl Acad Sci U S A. 2013/01/16. 2013; 110: E435-44. https://doi.org/10.1073/pnas.1222061110 PMID: 23319655
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E435-E444
-
-
Belmonte, M.F.1
Kirkbride, R.C.2
Stone, S.L.3
Pelletier, J.M.4
Bui, A.Q.5
Yeung, E.C.6
-
9
-
-
84925678331
-
Transcriptome atlas of the arabidopsis funiculus-A study of maternal seed subregions
-
PMID: 25684030
-
Khan D, Millar JL, Girard IJ, Chan A, Kirkbride RC, Pelletier JM, et al. Transcriptome atlas of the Arabidopsis funiculus-a study of maternal seed subregions. Plant J. 2015; 82: 41-53. https://doi.org/10.1111/tpj.12790 PMID: 25684030
-
(2015)
Plant J.
, vol.82
, pp. 41-53
-
-
Khan, D.1
Millar, J.L.2
Girard, I.J.3
Chan, A.4
Kirkbride, R.C.5
Pelletier, J.M.6
-
10
-
-
84962045541
-
-
PMID: 26888061
-
Silva AT, Ribone PA, Chan RL, Ligterink W, Hilhorst HWM. A Predictive Coexpression Network Identi fies Novel Genes Controlling the Seed-to-Seedling Phase Transition in Arabidopsis thaliana 1 [OPEN]. 2016; 170: 2218-2231. https://doi.org/10.1104/pp.15.01704 PMID: 26888061
-
(2016)
A Predictive Coexpression Network Identi Fies Novel Genes Controlling the Seed-to-Seedling Phase Transition in Arabidopsis Thaliana 1 [OPEN]
, vol.170
, pp. 2218-2231
-
-
Silva, A.T.1
Ribone, P.A.2
Chan, R.L.3
Ligterink, W.4
Hilhorst, H.W.M.5
-
11
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant arabidopsis thaliana
-
PMID: 11130711
-
The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 2000; 408: 796-815. https://doi.org/10.1038/35048692 PMID: 11130711
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
12
-
-
84906689347
-
Early allopolyploid evolution in the post-neolithic brassica napus oilseed genome
-
(80-) PMID: 25146293
-
Chalhoub B, Denoeud F, Liu S, Parkin I a. P, Tang H, Wang X, et al. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science (80-). 2014; 345: 950-953. https://doi.org/10.1126/science.1253435 PMID: 25146293
-
(2014)
Science
, vol.345
, pp. 950-953
-
-
Chalhoub, B.1
Denoeud, F.2
Liu, S.3
Parkin, I.A.P.4
Tang, H.5
Wang, X.6
-
13
-
-
84964679957
-
Positional distribution of transcription factor binding sites in arabidopsis thaliana
-
Nature Publishing Group; PMID: 27117388
-
Yu C-P, Lin J-J, Li W-H. Positional distribution of transcription factor binding sites in Arabidopsis thaliana. Sci Rep. Nature Publishing Group; 2016; 6: 25164. https://doi.org/10.1038/srep25164 PMID: 27117388
-
(2016)
Sci Rep.
, vol.6
, pp. 25164
-
-
Yu, C.-P.1
Lin, J.-J.2
Li, W.-H.3
-
14
-
-
84893861206
-
DNA-binding specificities of plant transcription factors and their potential to define target genes
-
PMID: 24477691
-
Franco-Zorrilla JM, López-Vidriero I, Carrasco JL, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc Natl Acad Sci U S A. 2014; 111: 2367-72. https://doi.org/10.1073/pnas.1316278111 PMID: 24477691
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 2367-2372
-
-
Franco-Zorrilla, J.M.1
López-Vidriero, I.2
Carrasco, J.L.3
Godoy, M.4
Vera, P.5
Solano, R.6
-
15
-
-
84949023944
-
Analysis of the DNA-binding activities of the arabidopsis R2R3-MYB transcription factor family by one-hybrid experiments in yeast
-
PMID: 26484765
-
Kelemen Z, Sebastian A, Xu W, Grain D, Salsac F, Avon A, et al. Analysis of the DNA-binding activities of the arabidopsis R2R3-MYB transcription factor family by one-hybrid experiments in yeast. PLoS One. 2015; 10: 1-22. https://doi.org/10.1371/journal.pone.0141044 PMID: 26484765
-
(2015)
PLoS One
, vol.10
, pp. 1-22
-
-
Kelemen, Z.1
Sebastian, A.2
Xu, W.3
Grain, D.4
Salsac, F.5
Avon, A.6
-
16
-
-
84975134214
-
Cistrome and epicistrome features shape the regulatory DNA landscape
-
Elsevier Inc.; PMID: 27203113
-
O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, et al. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell. Elsevier Inc.; 2016; 165: 1280-1292. https://doi.org/10.1016/j.cell.2016.04.038 PMID: 27203113
-
(2016)
Cell
, vol.165
, pp. 1280-1292
-
-
O'Malley, R.C.1
Huang, S.C.2
Song, L.3
Lewsey, M.G.4
Bartlett, A.5
Nery, J.R.6
-
17
-
-
84944474687
-
Subgroup-specific intrinsic disorder profiles of arabidopsis NAC transcription factors: Identification of functional hotspots
-
PMID: 26107850
-
Stender EG, O'Shea C, Skriver K. Subgroup-specific intrinsic disorder profiles of arabidopsis NAC transcription factors: Identification of functional hotspots. Plant Signal Behav. 2015; 10: e1010967. https://doi.org/10.1080/15592324.2015.1010967 PMID: 26107850
-
(2015)
Plant Signal Behav.
, vol.10
, pp. e1010967
-
-
Stender, E.G.1
O'Shea, C.2
Skriver, K.3
-
18
-
-
0041346459
-
Arabidopsis local resistance to botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4
-
PMID: 12848825
-
Ferrari S, Plotnikova JM, De Lorenzo G, Ausubel FM. Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4. Plant J. 2003; 35: 193-205. https://doi.org/10.1046/j.1365-313X.2003.01794.x PMID: 12848825
-
(2003)
Plant J.
, vol.35
, pp. 193-205
-
-
Ferrari, S.1
Plotnikova, J.M.2
De Lorenzo, G.3
Ausubel, F.M.4
-
19
-
-
9144228236
-
Conservation, diversification and expansion of C2H2 zinc finger proteins in the arabidopsis thaliana genome
-
PMID: 15236668
-
Englbrecht CC, Schoof H, Böhm S. Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. 2004; 5: 39. https://doi.org/10.1186/1471-2164-5-39 PMID: 15236668
-
(2004)
BMC Genomics
, vol.5
, pp. 39
-
-
Englbrecht, C.C.1
Schoof, H.2
Böhm, S.3
-
20
-
-
1942501774
-
The GATA family of transcription factors in arabidopsis and rice
-
PMID: 15084732
-
Reyes JC, Muro-Pastor MI, Florencio FJ. The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol. 2004; 134: 1718-1732. https://doi.org/10.1104/pp.103.037788 PMID: 15084732
-
(2004)
Plant Physiol.
, vol.134
, pp. 1718-1732
-
-
Reyes, J.C.1
Muro-Pastor, M.I.2
Florencio, F.J.3
-
21
-
-
33646832415
-
Genome-wide analysis of the ERF gene family
-
PMID: 16407444
-
Nakano T, Suzuki K, Fujimura T, Shinshi H. Genome-Wide Analysis of the ERF Gene Family. Plant Physiol. 2006; 140: 411-432. https://doi.org/10.1104/pp.105.073783 PMID: 16407444
-
(2006)
Plant Physiol.
, vol.140
, pp. 411-432
-
-
Nakano, T.1
Suzuki, K.2
Fujimura, T.3
Shinshi, H.4
-
22
-
-
41749085508
-
Genome-wide analysis of heat shock transcription factor families in rice and arabidopsis
-
PMID: 18407058
-
Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, et al. Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genomics. 2008; 35: 105-118. https://doi.org/10.1016/S1673-8527(08)60016-8 PMID: 18407058
-
(2008)
J Genet Genomics
, vol.35
, pp. 105-118
-
-
Guo, J.1
Wu, J.2
Ji, Q.3
Wang, C.4
Luo, L.5
Yuan, Y.6
-
23
-
-
40549134512
-
Genome-wide analysis of CCCH zinc finger family in arabidopsis and rice
-
PMID: 18221561
-
Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics. 2008; 9: 44. https://doi.org/10.1186/1471-2164-9-44 PMID: 18221561
-
(2008)
BMC Genomics
, vol.9
, pp. 44
-
-
Wang, D.1
Guo, Y.2
Wu, C.3
Yang, G.4
Li, Y.5
Zheng, C.6
-
24
-
-
84858072869
-
The trihelix family of transcription factors-light, stress and development
-
Elsevier Ltd; PMID: 22236699
-
Kaplan-Levy RN, Brewer PB, Quon T, Smyth DR. The trihelix family of transcription factors-light, stress and development. Trends Plant Sci. Elsevier Ltd; 2012; 17: 163-171. https://doi.org/10.1016/j. tplants.2011.12.002 PMID: 22236699
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 163-171
-
-
Kaplan-Levy, R.N.1
Brewer, P.B.2
Quon, T.3
Smyth, D.R.4
-
25
-
-
85020240856
-
Genome-wide identification and evolutionary and expression analyses of MYB-related genes in land plants
-
Du HAI, Wang YONGIN, Xie YI, Liang ZHE, Jiang SANIE, Zhang SHH, et al. Genome-Wide Identification and Evolutionary and Expression Analyses of MYB-Related Genes in Land Plants. DNA Res. 2013; 1: 1-12.
-
(2013)
DNA Res.
, vol.1
, pp. 1-12
-
-
Du, H.A.I.1
Yongin, W.2
Xie, Y.I.3
Liang, Z.H.E.4
Sanie, J.5
Zhang, S.H.H.6
-
26
-
-
19244384030
-
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in arabidopsis: New openings to the MADS world
-
PMID: 12837945
-
Parenicova L. Molecular and Phylogenetic Analyses of the Complete MADS-Box Transcription Factor Family in Arabidopsis: New Openings to the MADS World. Plant Cell Online. 2003; 15: 1538-1551. https://doi.org/10.1105/tpc.011544 PMID: 12837945
-
(2003)
Plant Cell Online
, vol.15
, pp. 1538-1551
-
-
Parenicova, L.1
-
27
-
-
0037094360
-
A gene trap dissociation insertion line, associated with a RING-H2 finger gene, shows tissue specific and developmental regulated expression of the gene in arabidopsis
-
PMID: 12062802
-
Lechner E, Goloubinoff P, Genschik P, Shen WH. A gene trap Dissociation insertion line, associated with a RING-H2 finger gene, shows tissue specific and developmental regulated expression of the gene in Arabidopsis. Gene. 2002; 290: 63-71. https://doi.org/10.1016/S0378-1119(02)00556-5 PMID: 12062802
-
(2002)
Gene
, vol.290
, pp. 63-71
-
-
Lechner, E.1
Goloubinoff, P.2
Genschik, P.3
Shen, W.H.4
-
28
-
-
84995598436
-
E3 ubiquitin ligase SP1 regulates peroxisome biogenesis in arabidopsis
-
Pan R, Satkovich J, Hu J. E3 ubiquitin ligase SP1 regulates peroxisome biogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2016; https://doi.org/10.1073/pnas.1613530113
-
(2016)
Proc Natl Acad Sci U S A
-
-
Pan, R.1
Satkovich, J.2
Hu, J.3
-
29
-
-
21444443478
-
MatInspector and beyond: Promoter analysis based on transcription factor binding sites
-
PMID: 15860560
-
Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, et al. MatInspector and beyond: Promoter analysis based on transcription factor binding sites. Bioinformatics. 2005; 21: 2933-2942. https://doi.org/10.1093/bioinformatics/bti473 PMID: 15860560
-
(2005)
Bioinformatics
, vol.21
, pp. 2933-2942
-
-
Cartharius, K.1
Frech, K.2
Grote, K.3
Klocke, B.4
Haltmeier, M.5
Klingenhoff, A.6
-
30
-
-
80052461299
-
Conservation of transcription factor binding events predicts gene expression across species
-
PMID: 21622661
-
Hemberg M, Kreiman G. Conservation of transcription factor binding events predicts gene expression across species. Nucleic Acids Res. 2011; 39: 7092-7102. https://doi.org/10.1093/nar/gkr404 PMID: 21622661
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7092-7102
-
-
Hemberg, M.1
Kreiman, G.2
-
31
-
-
32044469882
-
The MYB transcription factor superfamily of arabidopsis: Expression analysis and phylogenetic comparison with the rice MYB family
-
PMID: 16463103
-
Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhaofeng G, et al. The MYB transcription factor superfamily of Arabidopsis: Expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol. 2006; 60: 107-124. https://doi.org/10.1007/s11103-005-2910-y PMID: 16463103
-
(2006)
Plant Mol Biol.
, vol.60
, pp. 107-124
-
-
Yanhui, C.1
Xiaoyuan, Y.2
Kun, H.3
Meihua, L.4
Jigang, L.5
Zhaofeng, G.6
-
32
-
-
84925491555
-
An arabidopsis gene regulatory network for secondary cell wall synthesis
-
PMID: 25533953
-
Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, et al. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature; 2014; 517: 571-575. https://doi.org/10.1038/nature14099 PMID: 25533953
-
(2014)
Nature;
, vol.517
, pp. 571-575
-
-
Taylor-Teeples, M.1
Lin, L.2
De Lucas, M.3
Turco, G.4
Toal, T.W.5
Gaudinier, A.6
-
33
-
-
84952979955
-
BZR1 interacts with HY5 to mediate brassinosteroid- and light-regulated cotyledon opening in arabidopsis in darkness
-
Elsevier; PMID: 26363272
-
Li QF, He JX. BZR1 Interacts with HY5 to Mediate Brassinosteroid- and Light-Regulated Cotyledon Opening in Arabidopsis in Darkness. Mol Plant. Elsevier; 2016; 9: 113-125. https://doi.org/10.1016/j. molp.2015.08.014 PMID: 26363272
-
(2016)
Mol Plant
, vol.9
, pp. 113-125
-
-
Li, Q.F.1
He, J.X.2
-
34
-
-
84879509741
-
Differential control of seed primary dormancy in arabidopsis ecotypes by the transcription factor SPATULA
-
PMID: 23754415
-
Vaistij FE, Gan Y, Penfield S, Gilday AD, Dave A, He Z, et al. Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA. Proc Natl Acad Sci U S A. 2013; 110: 10866-71. https://doi.org/10.1073/pnas.1301647110 PMID: 23754415
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 10866-10871
-
-
Vaistij, F.E.1
Gan, Y.2
Penfield, S.3
Gilday, A.D.4
Dave, A.5
He, Z.6
-
35
-
-
84973558166
-
Tissue-specific laser microdissection of the brassica napus funiculus improves gene discovery and spatial identification of biological processes
-
PMID: 27194740
-
Chan AC, Khan D, Girard IJ, Becker MG, Millar JL, Sytnik D, et al. Tissue-specific laser microdissection of the Brassica napus funiculus improves gene discovery and spatial identification of biological processes. J Exp Bot. 2016; 67: erw179. https://doi.org/10.1093/jxb/erw179 PMID: 27194740
-
(2016)
J Exp Bot.
, vol.67
, pp. erw179
-
-
Chan, A.C.1
Khan, D.2
Girard, I.J.3
Becker, M.G.4
Millar, J.L.5
Sytnik, D.6
-
36
-
-
85016635481
-
Transcriptome analysis of the brassica napus-leptosphaeria maculans pathosystem identifies receptor, signalling and structural genes underlying plant resistance
-
PMID: 28222234
-
Becker MG, Zhang X, Walker PL, Wan JC, Millar JL, Khan D, et al. Transcriptome analysis of the Brassica napus-Leptosphaeria maculans pathosystem identifies receptor, signalling and structural genes underlying plant resistance. Plant J. 2017; https://doi.org/10.1111/tpj.13514 PMID: 28222234
-
(2017)
Plant J.
-
-
Becker, M.G.1
Zhang, X.2
Walker, P.L.3
Wan, J.C.4
Millar, J.L.5
Khan, D.6
-
37
-
-
84904556122
-
Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis
-
PMID: 24879533
-
Kim WC, Kim JY, Ko JH, Kang H, Han KH. Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis. Plant Mol Biol. 2014; 85: 589-599. https://doi.org/10.1007/s11103-014-0205-x PMID: 24879533
-
(2014)
Plant Mol Biol.
, vol.85
, pp. 589-599
-
-
Kim, W.C.1
Kim, J.Y.2
Ko, J.H.3
Kang, H.4
Han, K.H.5
-
38
-
-
48949120154
-
An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in arabidopsis
-
PMID: 18203871
-
Tapia-López R, García-Ponce B, Dubrovsky JG, Garay-Arroyo A, Pérez-Ruíz R V, Kim S-H, et al. An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis. Plant Physiol. 2008; 146: 1182-1192. https://doi.org/10.1104/pp. 107.108647 PMID: 18203871
-
(2008)
Plant Physiol.
, vol.146
, pp. 1182-1192
-
-
Tapia-López, R.1
García-Ponce, B.2
Dubrovsky, J.G.3
Garay-Arroyo, A.4
Pérez-Ruíz, R.V.5
Kim, S.-H.6
-
39
-
-
84885164457
-
Histological and ultrastructural changes in canola (Brassica napus) funicular anatomy during the seed lifecycle
-
Chan A, Belmonte M. Histological and ultrastructural changes in canola (Brassica napus) funicular anatomy during the seed lifecycle. Botany. 2013; 91: 671-679. https://doi.org/10.1139/cjb-2013-0141
-
(2013)
Botany
, vol.91
, pp. 671-679
-
-
Chan, A.1
Belmonte, M.2
-
40
-
-
70350441252
-
Loss of calmodulin binding to bax inhibitor-1 affects pseudomonas-mediated hypersensitive response-associated cell death in arabidopsis thaliana
-
PMID: 19674971
-
Kawai-Yamada M, Hori Z, Ogawa T, Ihara-Ohori Y, Tamura K, Nagano M, et al. Loss of calmodulin binding to bax inhibitor-1 affects pseudomonas-mediated hypersensitive response-associated cell death in Arabidopsis thaliana. J Biol Chem. 2009; 284: 27998-28003. https://doi.org/10.1074/jbc.M109. 037234 PMID: 19674971
-
(2009)
J Biol Chem.
, vol.284
, pp. 27998-28003
-
-
Kawai-Yamada, M.1
Hori, Z.2
Ogawa, T.3
Ihara-Ohori, Y.4
Tamura, K.5
Nagano, M.6
-
41
-
-
77954299992
-
AgriGO: A GO analysis toolkit for the agricultural community
-
PMID: 20435677
-
Du Z, Zhou X, Ling Y, Zhang Z, Su Z. agriGO: A GO analysis toolkit for the agricultural community. Nucleic Acids Res. 2010; 38: 64-70. https://doi.org/10.1093/nar/gkq310 PMID: 20435677
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 64-70
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.4
Su, Z.5
-
42
-
-
84979857821
-
RSAT 2015: Regulatory sequence analysis tools
-
PMID: 25904632
-
Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon JA, Delerce J, et al. RSAT 2015: Regulatory Sequence Analysis Tools. Nucleic Acids Res. 2015; 43: W50-6. https://doi.org/10.1093/nar/gkv362 PMID: 25904632
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. W50-W56
-
-
Medina-Rivera, A.1
Defrance, M.2
Sand, O.3
Herrmann, C.4
Castro-Mondragon, J.A.5
Delerce, J.6
-
43
-
-
23144439384
-
PatMatch: A program for finding patterns in peptide and nucleotide sequences
-
PMID: 15980466
-
Yan T, Yoo D, Berardini TZ, Mueller LA, Weems DC, Weng S, et al. PatMatch: A program for finding patterns in peptide and nucleotide sequences. Nucleic Acids Res. 2005; 33: 262-266. https://doi.org/10.1093/nar/gki368 PMID: 15980466
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 262-266
-
-
Yan, T.1
Yoo, D.2
Berardini, T.Z.3
Mueller, L.A.4
Weems, D.C.5
Weng, S.6
-
45
-
-
84883191963
-
OPOSSUM-3: Advanced analysis of regulatory motif over-representation across genes or ChIP-seq datasets
-
PMID: 22973536
-
Kwon AT, Arenillas DJ, Worsley Hunt R, Wasserman WW. oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets. G3 (Bethesda). 2012; 2: 987-1002. https://doi.org/10.1534/g3.112.003202 PMID: 22973536
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 987-1002
-
-
Kwon, A.T.1
Arenillas, D.J.2
Worsley Hunt, R.3
Wasserman, W.W.4
-
46
-
-
84905828039
-
Integrating biological pathways and genomic profiles with ChiBE 2
-
PMID: 25086704
-
Babur O, Dogrusoz U, Cakõr M, Aksoy BA, Schultz N, Sander C, et al. Integrating biological pathways and genomic profiles with ChiBE 2. BMC Genomics. 2014; 15: 642. https://doi.org/10.1186/1471-2164-15-642 PMID: 25086704
-
(2014)
BMC Genomics.
, vol.15
, pp. 642
-
-
Babur, O.1
Dogrusoz, U.2
Cakõr, M.3
Aksoy, B.A.4
Schultz, N.5
Sander, C.6
-
47
-
-
84881183309
-
Mapping functional transcription factor networks from gene expression data
-
PMID: 23636944
-
Haynes B, Maier E, Kramer M. Mapping Functional Transcription Factor Networks from Gene Expression Data. Genome Res. 2013; 23: 1319-1328. https://doi.org/10.1101/gr.150904.112 PMID: 23636944
-
(2013)
Genome Res.
, vol.23
, pp. 1319-1328
-
-
Haynes, B.1
Maier, E.2
Kramer, M.3
-
48
-
-
33846700587
-
Predicting transcription factor affinities to DNA from a biophysical model
-
PMID: 17098775
-
Roider HG, Kanhere A, Manke T, Vingron M. Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics. 2007; 23: 134-141. https://doi.org/10.1093/bioinformatics/btl565 PMID: 17098775
-
(2007)
Bioinformatics
, vol.23
, pp. 134-141
-
-
Roider, H.G.1
Kanhere, A.2
Manke, T.3
Vingron, M.4
|