메뉴 건너뛰기




Volumn 83, Issue 12, 2017, Pages

Acid evolution of Escherichia coli K-12 eliminates amino acid decarboxylases and reregulates catabolism

Author keywords

Acid; Decarboxylase; Escherichia coli; Experimental evolution; Fnr; GABA; Low pH; RNA polymerase

Indexed keywords

ACIDS; AMINO ACIDS; ARGININE; ESCHERICHIA COLI; GENES; METABOLISM; RNA;

EID: 85020047960     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00442-17     Document Type: Article
Times cited : (24)

References (53)
  • 1
    • 0032999413 scopus 로고    scopus 로고
    • Intraluminal pH of the human gastrointestinal tract
    • Fallingborg J. 1999. Intraluminal pH of the human gastrointestinal tract. Dan Med Bull 46:183-196
    • (1999) Dan Med Bull , vol.46 , pp. 183-196
    • Fallingborg, J.1
  • 2
    • 67649258517 scopus 로고    scopus 로고
    • Cytoplasmic pH Measurement and Homeostasis in Bacteria and Archaea
    • Slonczewski JL, Fujisawa M, Dopson M, Krulwich TA. 2009. Cytoplasmic pH Measurement and Homeostasis in Bacteria and Archaea. Adv Microb Physiol 55:1-79. https://doi.org/10.1016/S0065-2911(09)05501-5
    • (2009) Adv Microb Physiol , vol.55 , pp. 1-79
    • Slonczewski, J.L.1    Fujisawa, M.2    Dopson, M.3    Krulwich, T.A.4
  • 3
    • 79954784829 scopus 로고    scopus 로고
    • Molecular aspects of bacterial pH sensing and homeostasis
    • Krulwich TA, Sachs G, Padan E. 2011. Molecular aspects of bacterial pH sensing and homeostasis. Nat Rev Microbiol 9:330-343. https://doi.org/10.1038/nrmicro2549
    • (2011) Nat Rev Microbiol , vol.9 , pp. 330-343
    • Krulwich, T.A.1    Sachs, G.2    Padan, E.3
  • 4
    • 9444285788 scopus 로고    scopus 로고
    • Escherichia coli acid resistance: tales of an amateur acidophile
    • Foster JW. 2004. Escherichia coli acid resistance: tales of an amateur acidophile. Nat Rev Microbiol 2:898-907. https://doi.org/10.1038/nrmicro1021
    • (2004) Nat Rev Microbiol , vol.2 , pp. 898-907
    • Foster, J.W.1
  • 5
    • 84924930823 scopus 로고    scopus 로고
    • Coping with low pH: molecular strategies in neutralophilic bacteria
    • Lund P, Tramonti A, De Biase D. 2014. Coping with low pH: molecular strategies in neutralophilic bacteria. FEMS Microbiol Rev 38:1091-1125. https://doi.org/10.1111/1574-6976.12076
    • (2014) FEMS Microbiol Rev , vol.38 , pp. 1091-1125
    • Lund, P.1    Tramonti, A.2    De Biase, D.3
  • 6
    • 79959894418 scopus 로고    scopus 로고
    • Understanding the role of gut microbiome-host metabolic signal disruption in health and disease
    • Holmes E, Li JV, Athanasiou T, Ashrafian H, Nicholson JK. 2011. Understanding the role of gut microbiome-host metabolic signal disruption in health and disease. Trends Microbiol 19:349-359. https://doi.org/10.1016/j.tim.2011.05.006
    • (2011) Trends Microbiol , vol.19 , pp. 349-359
    • Holmes, E.1    Li, J.V.2    Athanasiou, T.3    Ashrafian, H.4    Nicholson, J.K.5
  • 7
    • 84867845255 scopus 로고    scopus 로고
    • The interplay between the intestinal microbiota and the brain
    • Collins SM, Surette M, Bercik P. 2012. The interplay between the intestinal microbiota and the brain. Nat Rev Microbiol 10:735-742. https://doi.org/10.1038/nrmicro2876
    • (2012) Nat Rev Microbiol , vol.10 , pp. 735-742
    • Collins, S.M.1    Surette, M.2    Bercik, P.3
  • 8
    • 84884527530 scopus 로고    scopus 로고
    • Mechanisms of acid resistance in Escherichia coli
    • Kanjee U, Houry W. 2013. Mechanisms of acid resistance in Escherichia coli. Annu Rev Microbiol 67:65-81. https://doi.org/10.1146/annurev-micro-092412-155708
    • (2013) Annu Rev Microbiol , vol.67 , pp. 65-81
    • Kanjee, U.1    Houry, W.2
  • 9
    • 0041465717 scopus 로고    scopus 로고
    • Crystal structure and functional analysis of Escherichia coli glutamate decarboxylase
    • Capitani G, De Biase D, Aurizi C, Gut H, Bossa F, Grutter MG. 2003. Crystal structure and functional analysis of Escherichia coli glutamate decarboxylase. EMBO J 22:4027-4037. https://doi.org/10.1093/emboj/cdg403
    • (2003) EMBO J , vol.22 , pp. 4027-4037
    • Capitani, G.1    De Biase, D.2    Aurizi, C.3    Gut, H.4    Bossa, F.5    Grutter, M.G.6
  • 11
    • 0028365256 scopus 로고
    • Dynamics of adaptation and diversification: a 10, 000-generation experiment with bacterial populations
    • Lenski RE, Travisano M. 1994. Dynamics of adaptation and diversification: a 10, 000-generation experiment with bacterial populations. Proc Natl Acad Sci U S A 91:6808-6814. https://doi.org/10.1073/pnas.91.15.6808
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 6808-6814
    • Lenski, R.E.1    Travisano, M.2
  • 14
    • 84917686994 scopus 로고    scopus 로고
    • Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq
    • Deatherage DE, Barrick JE. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol 1151:165-188. https://doi.org/10.1007/978-1-4939-0554-6_12
    • (2014) Methods Mol Biol , vol.1151 , pp. 165-188
    • Deatherage, D.E.1    Barrick, J.E.2
  • 15
    • 80055008762 scopus 로고    scopus 로고
    • The enzymatic activities of the Escherichia coli basic aliphatic amino acid decarboxylases exhibit a pH zone of inhibition
    • Kanjee U, Gutsche I, Ramachandran S, Houry WA. 2011. The enzymatic activities of the Escherichia coli basic aliphatic amino acid decarboxylases exhibit a pH zone of inhibition. Biochemistry 50:9388-9398. https://doi.org/10.1021/bi201161k
    • (2011) Biochemistry , vol.50 , pp. 9388-9398
    • Kanjee, U.1    Gutsche, I.2    Ramachandran, S.3    Houry, W.A.4
  • 16
    • 11144263144 scopus 로고    scopus 로고
    • pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12
    • Maurer LM, Yohannes E, Bondurant SS, Radmacher M, Slonczewski JL. 2005. pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J Bacteriol 187:304-319. https://doi.org/10.1128/JB.187.1.304-319.2005
    • (2005) J Bacteriol , vol.187 , pp. 304-319
    • Maurer, L.M.1    Yohannes, E.2    Bondurant, S.S.3    Radmacher, M.4    Slonczewski, J.L.5
  • 17
    • 33750500341 scopus 로고    scopus 로고
    • Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12
    • Hayes ET, Wilks JC, Sanfilippo P, Yohannes E, Tate DP, Jones BD, Radmacher MD, BonDurant SS, Slonczewski JL. 2006. Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12. BMC Microbiol 6:89. https://doi.org/10.1186/1471-2180-6-89
    • (2006) BMC Microbiol , vol.6 , pp. 89
    • Hayes, E.T.1    Wilks, J.C.2    Sanfilippo, P.3    Yohannes, E.4    Tate, D.P.5    Jones, B.D.6    Radmacher, M.D.7    BonDurant, S.S.8    Slonczewski, J.L.9
  • 19
    • 84923250136 scopus 로고    scopus 로고
    • Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq
    • Deatherage DE, Traverse CC, Wolf LN, Barrick JE. 2014. Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq. Front Genet 5:468. https://doi.org/10.3389/fgene.2014.00468
    • (2014) Front Genet , vol.5 , pp. 468
    • Deatherage, D.E.1    Traverse, C.C.2    Wolf, L.N.3    Barrick, J.E.4
  • 20
    • 79953224088 scopus 로고    scopus 로고
    • Crystal structure of the sensory domain of Escherichia coli CadC, a member of the ToxR-like protein family
    • Eichinger A, Haneburger I, Koller C, Jung K, Skerra A. 2011. Crystal structure of the sensory domain of Escherichia coli CadC, a member of the ToxR-like protein family. Protein Sci 20:656-669. https://doi.org/10.1002/pro.594
    • (2011) Protein Sci , vol.20 , pp. 656-669
    • Eichinger, A.1    Haneburger, I.2    Koller, C.3    Jung, K.4    Skerra, A.5
  • 21
    • 0029812095 scopus 로고    scopus 로고
    • Kinetics of expression of the Escherichia coli cad operon as a function of pH and lysine
    • Neely MN, Olson ER. 1996. Kinetics of expression of the Escherichia coli cad operon as a function of pH and lysine. J Bacteriol 178:5522-5528. https://doi.org/10.1128/jb.178.18.5522-5528.1996
    • (1996) J Bacteriol , vol.178 , pp. 5522-5528
    • Neely, M.N.1    Olson, E.R.2
  • 23
    • 85028130078 scopus 로고    scopus 로고
    • Toxin GhoT of the GhoT/GhoS toxin/antitoxin system damages the cell membrane to reduce adenosine triphosphate and to reduce growth under stress
    • Cheng HY, Soo VWC, Islam S, McAnulty MJ, Benedik MJ, Wood TK. 2014. Toxin GhoT of the GhoT/GhoS toxin/antitoxin system damages the cell membrane to reduce adenosine triphosphate and to reduce growth under stress. Environ Microbiol 16:1741-1754. https://doi.org/10.1111/1462-2920.12373
    • (2014) Environ Microbiol , vol.16 , pp. 1741-1754
    • Cheng, H.Y.1    Soo, V.W.C.2    Islam, S.3    McAnulty, M.J.4    Benedik, M.J.5    Wood, T.K.6
  • 24
    • 34147172119 scopus 로고    scopus 로고
    • Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance
    • Mates AK, Sayed AK, Foster JW. 2007. Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance. J Bacteriol 189: 2759-2768. https://doi.org/10.1128/JB.01490-06
    • (2007) J Bacteriol , vol.189 , pp. 2759-2768
    • Mates, A.K.1    Sayed, A.K.2    Foster, J.W.3
  • 25
    • 33646184857 scopus 로고    scopus 로고
    • A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth
    • Constantinidou C, Hobman JL, Griffiths L, Patel MD, Penn CW, Cole JA, Overton TW. 2006. A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth. J Biol Chem 281:4802-4815. https://doi.org/10.1074/jbc.M512312200
    • (2006) J Biol Chem , vol.281 , pp. 4802-4815
    • Constantinidou, C.1    Hobman, J.L.2    Griffiths, L.3    Patel, M.D.4    Penn, C.W.5    Cole, J.A.6    Overton, T.W.7
  • 26
    • 0043032584 scopus 로고    scopus 로고
    • Global gene expression profiling in Escherichia coli K12: the effects of oxygen availability and FNR
    • Salmon K, Hung S, Mekjian K, Baldi P, Hatfield GW, Gunsalus RP. 2003. Global gene expression profiling in Escherichia coli K12: the effects of oxygen availability and FNR. J Biol Chem 278:29837-29855. https://doi.org/10.1074/jbc.M213060200
    • (2003) J Biol Chem , vol.278 , pp. 29837-29855
    • Salmon, K.1    Hung, S.2    Mekjian, K.3    Baldi, P.4    Hatfield, G.W.5    Gunsalus, R.P.6
  • 27
    • 13244289800 scopus 로고    scopus 로고
    • Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function
    • Kang Y, Weber KD, Qiu Y, Kiley PJ, Blattner FR. 2005. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. J Bacteriol 187:1135-1160. https://doi.org/10.1128/JB.187.3.1135-1160.2005
    • (2005) J Bacteriol , vol.187 , pp. 1135-1160
    • Kang, Y.1    Weber, K.D.2    Qiu, Y.3    Kiley, P.J.4    Blattner, F.R.5
  • 28
    • 79251538647 scopus 로고    scopus 로고
    • Transcriptional regulation of main metabolic pathways of cyoA, cydB, fnr, and fur gene knockout Escherichia coli in C-limited and N-limited aerobic continuous cultures
    • Kumar R, Shimizu K. 2011. Transcriptional regulation of main metabolic pathways of cyoA, cydB, fnr, and fur gene knockout Escherichia coli in C-limited and N-limited aerobic continuous cultures. Microb Cell Fact 10:3. https://doi.org/10.1186/1475-2859-10-3
    • (2011) Microb Cell Fact , vol.10 , pp. 3
    • Kumar, R.1    Shimizu, K.2
  • 29
    • 84879620270 scopus 로고    scopus 로고
    • Genome-scale analysis of Escherichia coli FNR reveals complex features of transcription factor binding
    • Myers KS, Yan H, Ong IM, Chung D, Liang K, Tran F, Kele S, Landick R, Kiley PJ. 2013. Genome-scale analysis of Escherichia coli FNR reveals complex features of transcription factor binding. PLoS Genet 9:e1003565. https://doi.org/10.1371/journal.pgen.1003565
    • (2013) PLoS Genet , vol.9
    • Myers, K.S.1    Yan, H.2    Ong, I.M.3    Chung, D.4    Liang, K.5    Tran, F.6    Kele, S.7    Landick, R.8    Kiley, P.J.9
  • 30
    • 0029946853 scopus 로고    scopus 로고
    • Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coli
    • Stim-Herndon KP, Flores TM, Bennett GN. 1996. Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coli. Microbiology 142:1311-1320. https://doi.org/10.1099/13500872-142-5-1311
    • (1996) Microbiology , vol.142 , pp. 1311-1320
    • Stim-Herndon, K.P.1    Flores, T.M.2    Bennett, G.N.3
  • 31
    • 0019521350 scopus 로고
    • The release of gammaaminobutyric acid, glutamate, and acetylcholine from striatal slices: a mass fragmentographic study
    • Moroni F, Bianchi C, Tanganelli S, Moneti GBL. 1981. The release of gammaaminobutyric acid, glutamate, and acetylcholine from striatal slices: a mass fragmentographic study. J Neurochem 36:1691-1697. https://doi.org/10.1111/j.1471-4159.1981.tb00420.x
    • (1981) J Neurochem , vol.36 , pp. 1691-1697
    • Moroni, F.1    Bianchi, C.2    Tanganelli, S.3    Moneti, G.B.L.4
  • 33
    • 84866045782 scopus 로고    scopus 로고
    • The inner membrane protein, YhiM, is necessary for Escherichia coli (E. coli) survival in acidic conditions
    • Nguyen T, Sparks-Thissen R. 2012. The inner membrane protein, YhiM, is necessary for Escherichia coli (E. coli) survival in acidic conditions. Arch Microbiol 194:637-641. https://doi.org/10.1007/s00203-012-0798-x
    • (2012) Arch Microbiol , vol.194 , pp. 637-641
    • Nguyen, T.1    Sparks-Thissen, R.2
  • 34
    • 84906877006 scopus 로고    scopus 로고
    • Sulfate assimilation pathway intermediate phosphoadenosine 5=-phosphosulfate acts as a signal molecule affecting production of curli fibres in Escherichia coli
    • Rossi E, Motta S, Mauri P, Landini P. 2014. Sulfate assimilation pathway intermediate phosphoadenosine 5=-phosphosulfate acts as a signal molecule affecting production of curli fibres in Escherichia coli. Microbiology 160:1832-1844. https://doi.org/10.1099/mic.0.079699-0
    • (2014) Microbiology , vol.160 , pp. 1832-1844
    • Rossi, E.1    Motta, S.2    Mauri, P.3    Landini, P.4
  • 35
    • 34548598563 scopus 로고    scopus 로고
    • Structure and function of the Escherichia coli protein YmgB: a protein critical for biofilm formation and acidresistance
    • Lee J, Page R, García-Contreras R, Palermino JM, Zhang XS, Doshi O, Wood TK, Peti W. 2007. Structure and function of the Escherichia coli protein YmgB: a protein critical for biofilm formation and acidresistance. J Mol Biol 373:11-26. https://doi.org/10.1016/j.jmb.2007.07.037
    • (2007) J Mol Biol , vol.373 , pp. 11-26
    • Lee, J.1    Page, R.2    García-Contreras, R.3    Palermino, J.M.4    Zhang, X.S.5    Doshi, O.6    Wood, T.K.7    Peti, W.8
  • 36
    • 84941618050 scopus 로고    scopus 로고
    • Physiologic hypoxia and oxygen homeostasis in the healthy intestine. A review in the theme: cellular responses to hypoxia
    • Zheng L, Kelly CJ, Colgan SP. 2015. Physiologic hypoxia and oxygen homeostasis in the healthy intestine. A review in the theme: cellular responses to hypoxia. Am J Physiol Cell Physiol 309:C350-C360. https://doi.org/10.1152/ajpcell.00191.2015
    • (2015) Am J Physiol Cell Physiol , vol.309 , pp. C350-C360
    • Zheng, L.1    Kelly, C.J.2    Colgan, S.P.3
  • 38
    • 84874764415 scopus 로고    scopus 로고
    • Escherichia coli K-12 survives anaerobic exposure at pH 2 without RpoS, Gad, or hydrogenases, but shows sensitivity to autoclaved broth products
    • Riggins DP, Narvaez MJ, Martinez KA, Harden MM, Slonczewski JL. 2013. Escherichia coli K-12 survives anaerobic exposure at pH 2 without RpoS, Gad, or hydrogenases, but shows sensitivity to autoclaved broth products. PLoS One 8:e56796. https://doi.org/10.1371/journal.pone.0056796
    • (2013) PLoS One , vol.8
    • Riggins, D.P.1    Narvaez, M.J.2    Martinez, K.A.3    Harden, M.M.4    Slonczewski, J.L.5
  • 39
    • 77956330310 scopus 로고    scopus 로고
    • Hydrogenase-3 contributes to anaerobic acid resistance of escherichia coli
    • Noguchi K, Riggins DP, Eldahan KC, Kitko RD, Slonczewski JL. 2010. Hydrogenase-3 contributes to anaerobic acid resistance of escherichia coli. PLoS One 5:e10132. https://doi.org/10.1371/journal.pone.0010132
    • (2010) PLoS One , vol.5
    • Noguchi, K.1    Riggins, D.P.2    Eldahan, K.C.3    Kitko, R.D.4    Slonczewski, J.L.5
  • 40
    • 0141781020 scopus 로고    scopus 로고
    • CadC is the preferential target of a convergent evolution driving enteroinvasive Escherichia coli toward a lysine decarboxylase-defective phenotype
    • Casalino M, Latella MC, Prosseda G, Colonna B. 2003. CadC is the preferential target of a convergent evolution driving enteroinvasive Escherichia coli toward a lysine decarboxylase-defective phenotype. Infect Immun 71:5472-5479. https://doi.org/10.1128/IAI.71.10.5472-5479.2003
    • (2003) Infect Immun , vol.71 , pp. 5472-5479
    • Casalino, M.1    Latella, M.C.2    Prosseda, G.3    Colonna, B.4
  • 41
    • 77952070971 scopus 로고    scopus 로고
    • Regulation of aerobic and anaerobic D-malate metabolism of Escherichia coli by the LysR-type regulator DmlR (YeaT)
    • Lukas H, Reimann J, Kim Bin O, Grimpo J, Unden G. 2010. Regulation of aerobic and anaerobic D-malate metabolism of Escherichia coli by the LysR-type regulator DmlR (YeaT). J Bacteriol 192:2503-2511. https://doi.org/10.1128/JB.01665-09
    • (2010) J Bacteriol , vol.192 , pp. 2503-2511
    • Lukas, H.1    Reimann, J.2    Kim Bin, O.3    Grimpo, J.4    Unden, G.5
  • 42
    • 70450265179 scopus 로고    scopus 로고
    • Regulation of tartrate metabolism by TtdR and relation to the DcuS-DcuR-regulated C4-dicarboxylate metabolism of Escherichia coli
    • Kim Bin O, Reimann J, Lukas H, Schumacher U, Grimpo J, Dünnwald P, Unden G. 2009. Regulation of tartrate metabolism by TtdR and relation to the DcuS-DcuR-regulated C4-dicarboxylate metabolism of Escherichia coli. Microbiology 155:3632-3640. https://doi.org/10.1099/mic.0.031401-0
    • (2009) Microbiology , vol.155 , pp. 3632-3640
    • Kim Bin, O.1    Reimann, J.2    Lukas, H.3    Schumacher, U.4    Grimpo, J.5    Dünnwald, P.6    Unden, G.7
  • 44
    • 79955575753 scopus 로고    scopus 로고
    • A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli
    • Deininger KNW, Horikawa A, Kitko RD, Tatsumi R, Rosner JL, Wachi M, Slonczewski JL. 2011. A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli. PLoS One 6:e18960. https://doi.org/10.1371/journal.pone.0018960
    • (2011) PLoS One , vol.6
    • Deininger, K.N.W.1    Horikawa, A.2    Kitko, R.D.3    Tatsumi, R.4    Rosner, J.L.5    Wachi, M.6    Slonczewski, J.L.7
  • 46
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640-6645. https://doi.org/10.1073/pnas.120163297
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 47
    • 0000174016 scopus 로고
    • Simplified tests for some amino acid decarboxylases and for the arginine dihydrolase system
    • Møller V. 1955. Simplified tests for some amino acid decarboxylases and for the arginine dihydrolase system. Acta Pathol Microbiol Scand 36: 158-172
    • (1955) Acta Pathol Microbiol Scand , vol.36 , pp. 158-172
    • Møller, V.1
  • 48
    • 0141566454 scopus 로고    scopus 로고
    • GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12
    • Ma Z, Gong S, Richard H, Tucker DL, Conway T, Foster JW. 2003. GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12. Mol Microbiol 49:1309-1320. https://doi.org/10.1046/j.1365-2958.2003.03633.x
    • (2003) Mol Microbiol , vol.49 , pp. 1309-1320
    • Ma, Z.1    Gong, S.2    Richard, H.3    Tucker, D.L.4    Conway, T.5    Foster, J.W.6
  • 49
    • 84877122812 scopus 로고    scopus 로고
    • L-Glutamine provides acid resistance for Escherichia coli through enzymatic release of ammonia
    • Lu P, Ma D, Chen Y, Guo Y, Chen G-Q, Deng H, Shi Y. 2013. L-Glutamine provides acid resistance for Escherichia coli through enzymatic release of ammonia. Cell Res 23:635-644. https://doi.org/10.1038/cr.2013.13
    • (2013) Cell Res , vol.23 , pp. 635-644
    • Lu, P.1    Ma, D.2    Chen, Y.3    Guo, Y.4    Chen, G.-Q.5    Deng, H.6    Shi, Y.7
  • 50
    • 84555189150 scopus 로고    scopus 로고
    • The EZ:Faast family of amino acid analysis kits: application of the GC-FID kit for rapid determination of plasma tryptophan and other amino acids
    • Badawy A. 2012. The EZ:Faast family of amino acid analysis kits: application of the GC-FID kit for rapid determination of plasma tryptophan and other amino acids. Methods Mol Biol 828:153-164. https://doi.org/10.1007/978-1-61779-445-2_14
    • (2012) Methods Mol Biol , vol.828 , pp. 153-164
    • Badawy, A.1
  • 51
    • 0029073161 scopus 로고
    • Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli
    • Lin J, In Soo Lee Frey J, Slonczewski JL, Foster JW. 1995. Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli. J Bacteriol 177:4097-4104. https://doi.org/10.1128/jb.177.14.4097-4104.1995
    • (1995) J Bacteriol , vol.177 , pp. 4097-4104
    • Lin, J.1    In Soo Lee Frey, J.2    Slonczewski, J.L.3    Foster, J.W.4
  • 52
    • 84963776493 scopus 로고    scopus 로고
    • Understanding the host-adapted state of Citrobacter rodentium by transcriptomic analysis
    • Smith AD, Yan X, Chen C, Dawson HD, Bhagwat AA. 2016. Understanding the host-adapted state of Citrobacter rodentium by transcriptomic analysis. Arch Microbiol 198:353-362. https://doi.org/10.1007/s00203-016-1191-y
    • (2016) Arch Microbiol , vol.198 , pp. 353-362
    • Smith, A.D.1    Yan, X.2    Chen, C.3    Dawson, H.D.4    Bhagwat, A.A.5
  • 53
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11:R106. https://doi.org/10.1186/gb-2010-11-10-r106
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.