SCOPUS 정보 검색 플랫폼

Current Protocols in Bioinformatics

Volumn 51, Issue 1, 2015, Pages 11.14.1-11.14.19

Mapping RNA-seq Reads with STAR

(2) Dobin, Alexander a Gingeras, Thomas R a

a Cold Spring Harbor ^* (United States)

Author keywords

reads mapping; RNA seq; sequence alignment; spliced alignment; STAR; transcriptome

Indexed keywords

ARTICLE; GENE EXPRESSION; GENE MAPPING; GENETIC TRANSCRIPTION; INFORMATION PROCESSING; MATHEMATICAL ANALYSIS; PRIORITY JOURNAL; RNA SEQUENCE; RNA SPLICE SITE; RNA STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SIGNAL PROCESSING; SOFTWARE; ALGORITHM; CHEMISTRY; CHROMOSOMAL MAPPING; COMPUTER INTERFACE; DATABASE MANAGEMENT SYSTEM; GENETIC DATABASE; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROCEDURES;

RNA;

ALGORITHMS; BASE SEQUENCE; CHROMOSOME MAPPING; DATABASE MANAGEMENT SYSTEMS; DATABASES, GENETIC; MOLECULAR SEQUENCE DATA; RNA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, RNA; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 85019897120 PISSN: 19343396 EISSN: 1934340X Source Type: Journal
DOI: 10.1002/0471250953.bi1114s51 Document Type: Article

Times cited : (793)

References (7)

1
- 84871809302
- STAR: Ultrafast universal RNA-seq aligner
- Dobin, A, Davis, C.A, Schlesinger, F, Drenkow, J, Zaleski, C, Jha, S, Batut, P, Chaisson, M, and Gingeras, T.R. 2013. STAR: Ultrafast universal RNA-seq aligner. Bioinformatics 29:15-21. doi: 10.1093/bioinformatics/bts635.
- (2013) Bioinformatics , vol.29 , pp. 15-21
- Dobin, A.¹ Davis, C.A.² Schlesinger, F.³ Drenkow, J.⁴ Zaleski, C.⁵ Jha, S.⁶ Batut, P.⁷ Chaisson, M.⁸ Gingeras, T.R.⁹

2
- 79961123152
- RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
- Li, B. and Dewey, C.N. 2011. RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12:323.
- (2011) BMC Bioinformatics , vol.12 , pp. 323
- Li, B.¹ Dewey, C.N.²

3
- 68549104404
- The sequence alignment/map format and SAMtools
- Li, H, Handsaker, B, Wysoker, A, Fennell, T, Ruan, J, Homer, N, Marth, G, Abecasis, G, and Durbin, R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079. doi: 10.1093/bioinformatics/btp352.
- (2009) Bioinformatics , vol.25 , pp. 2078-2079
- Li, H.¹ Handsaker, B.² Wysoker, A.³ Fennell, T.⁴ Ruan, J.⁵ Homer, N.⁶ Marth, G.⁷ Abecasis, G.⁸ Durbin, R.⁹

4
- 77952123055
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- Trapnell, C, Williams, B.A, Pertea, G, Mortazavi, A, Kwan, G, van Baren, M.J, Salzberg, S.L, Wold, B.J, and Pachter, L. 2010 Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28:511-515. doi: 10.1038/nbt.1621.
- (2010) Nat. Biotechnol. , vol.28 , pp. 511-515
- Trapnell, C.¹ Williams, B.A.² Pertea, G.³ Mortazavi, A.⁴ Kwan, G.⁵ van Baren, M.J.⁶ Salzberg, S.L.⁷ Wold, B.J.⁸ Pachter, L.⁹

5
- 85075755900
- https://github.com/alexdobin/STAR

6
- 85075751911
- https://groups.google.com/forum/#!forum/rna-star

7
- 85075750678
- https://github.com/alexdobin/STAR/raw/master/doc/STARmanual.pdf

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.