메뉴 건너뛰기




Volumn 67, Issue 2, 2017, Pages 224-236

Global epidemiology of HCV subtypes and resistance-associated substitutions evaluated by sequencing-based subtype analyses

Author keywords

Antiviral agents; Deep sequencing; Genotype; Hepatitis C virus; Resistance; Subtypes

Indexed keywords

ANTIVIRUS AGENT; VIRAL PROTEIN;

EID: 85019836059     PISSN: 01688278     EISSN: 16000641     Source Type: Journal    
DOI: 10.1016/j.jhep.2017.03.014     Document Type: Article
Times cited : (112)

References (41)
  • 1
    • 23944506014 scopus 로고    scopus 로고
    • Global epidemiology of hepatitis C virus infection
    • Shepard, C.W., Finelli, L., Alter, M.J., Global epidemiology of hepatitis C virus infection. Lancet Infect Dis 5 (2005), 558–567.
    • (2005) Lancet Infect Dis , vol.5 , pp. 558-567
    • Shepard, C.W.1    Finelli, L.2    Alter, M.J.3
  • 2
    • 0035811625 scopus 로고    scopus 로고
    • Hepatitis C virus infection
    • Lauer, G.M., Walker, B.D., Hepatitis C virus infection. N Engl J Med 345 (2001), 41–52.
    • (2001) N Engl J Med , vol.345 , pp. 41-52
    • Lauer, G.M.1    Walker, B.D.2
  • 3
    • 84894707183 scopus 로고    scopus 로고
    • Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource
    • Smith, D.B., Bukh, J., Kuiken, C., Muerhoff, A.S., Rice, C.M., Stapleton, J.T., et al. Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource. Hepatology 59 (2014), 318–327.
    • (2014) Hepatology , vol.59 , pp. 318-327
    • Smith, D.B.1    Bukh, J.2    Kuiken, C.3    Muerhoff, A.S.4    Rice, C.M.5    Stapleton, J.T.6
  • 4
    • 34848881072 scopus 로고    scopus 로고
    • Sequence diversity of hepatitis C virus: implications for immune control and therapy
    • Timm, J., Roggendorf, M., Sequence diversity of hepatitis C virus: implications for immune control and therapy. World J Gastroenterol 13 (2007), 4808–4817.
    • (2007) World J Gastroenterol , vol.13 , pp. 4808-4817
    • Timm, J.1    Roggendorf, M.2
  • 5
    • 84952815567 scopus 로고    scopus 로고
    • Direct-acting antivirals for the treatment of hepatitis C virus infection: optimizing current IFN-free treatment and future perspectives
    • Asselah, T., Boyer, N., Saadoun, D., Martinot-Peignoux, M., Marcellin, P., Direct-acting antivirals for the treatment of hepatitis C virus infection: optimizing current IFN-free treatment and future perspectives. Liver Int 36 (2016), 47–57.
    • (2016) Liver Int , vol.36 , pp. 47-57
    • Asselah, T.1    Boyer, N.2    Saadoun, D.3    Martinot-Peignoux, M.4    Marcellin, P.5
  • 8
    • 84952883325 scopus 로고    scopus 로고
    • Sofosbuvir and velpatasvir for HCV genotype 1, 2, 4, 5, and 6 infection
    • Feld, J.J., Jacobson, I.M., Hezode, C., Asselah, T., Ruane, P.J., Gruener, N., et al. Sofosbuvir and velpatasvir for HCV genotype 1, 2, 4, 5, and 6 infection. N Engl J Med 373 (2015), 2599–2607.
    • (2015) N Engl J Med , vol.373 , pp. 2599-2607
    • Feld, J.J.1    Jacobson, I.M.2    Hezode, C.3    Asselah, T.4    Ruane, P.J.5    Gruener, N.6
  • 10
    • 84914150658 scopus 로고    scopus 로고
    • Global epidemiology and genotype distribution of the hepatitis C virus infection
    • Gower, E., Estes, C., Blach, S., Razavi-Shearer, K., Razavi, H., Global epidemiology and genotype distribution of the hepatitis C virus infection. J Hepatol 61 (2014), S45–S57.
    • (2014) J Hepatol , vol.61 , pp. S45-S57
    • Gower, E.1    Estes, C.2    Blach, S.3    Razavi-Shearer, K.4    Razavi, H.5
  • 12
    • 78650862933 scopus 로고    scopus 로고
    • Hepatitis C virus genotype 3a with phylogenetically distinct origin is circulating in Pakistan
    • Rehman, I.U., Idrees, M., Ali, M., Ali, L., Butt, S., Hussain, A., et al. Hepatitis C virus genotype 3a with phylogenetically distinct origin is circulating in Pakistan. Genet Vaccines Ther, 9, 2011, 2.
    • (2011) Genet Vaccines Ther , vol.9 , pp. 2
    • Rehman, I.U.1    Idrees, M.2    Ali, M.3    Ali, L.4    Butt, S.5    Hussain, A.6
  • 13
    • 84945929387 scopus 로고    scopus 로고
    • Spatiotemporal reconstruction of the introduction of hepatitis C virus into Scotland and its subsequent regional transmission
    • McNaughton, A.L., Cameron, I.D., Wignall-Fleming, E.B., Biek, R., McLauchlan, J., Gunson, R.N., et al. Spatiotemporal reconstruction of the introduction of hepatitis C virus into Scotland and its subsequent regional transmission. J Virol 89 (2015), 11223–11232.
    • (2015) J Virol , vol.89 , pp. 11223-11232
    • McNaughton, A.L.1    Cameron, I.D.2    Wignall-Fleming, E.B.3    Biek, R.4    McLauchlan, J.5    Gunson, R.N.6
  • 15
    • 84941878614 scopus 로고    scopus 로고
    • High incidence of the hepatitis C virus recombinant 2k/1b in Georgia: Recommendations for testing and treatment
    • Karchava, M., Waldenstrom, J., Parker, M., Hallack, R., Sharvadze, L., Gatserelia, L., et al. High incidence of the hepatitis C virus recombinant 2k/1b in Georgia: Recommendations for testing and treatment. Hepatol Res 45 (2015), 1292–1298.
    • (2015) Hepatol Res , vol.45 , pp. 1292-1298
    • Karchava, M.1    Waldenstrom, J.2    Parker, M.3    Hallack, R.4    Sharvadze, L.5    Gatserelia, L.6
  • 16
    • 84863421649 scopus 로고    scopus 로고
    • Origin and evolution of the unique hepatitis C virus circulating recombinant form 2k/1b
    • Raghwani, J., Thomas, X.V., Koekkoek, S.M., Schinkel, J., Molenkamp, R., van de Laar, T.J., et al. Origin and evolution of the unique hepatitis C virus circulating recombinant form 2k/1b. J Virol 86 (2012), 2212–2220.
    • (2012) J Virol , vol.86 , pp. 2212-2220
    • Raghwani, J.1    Thomas, X.V.2    Koekkoek, S.M.3    Schinkel, J.4    Molenkamp, R.5    van de Laar, T.J.6
  • 17
    • 0036196640 scopus 로고    scopus 로고
    • A natural intergenotypic recombinant of hepatitis C virus identified in St Petersburg
    • Kalinina, O., Norder, H., Mukomolov, S., Magnius, L.O., A natural intergenotypic recombinant of hepatitis C virus identified in St Petersburg. J Virol 76 (2002), 4034–4043.
    • (2002) J Virol , vol.76 , pp. 4034-4043
    • Kalinina, O.1    Norder, H.2    Mukomolov, S.3    Magnius, L.O.4
  • 18
    • 84873604286 scopus 로고    scopus 로고
    • Antiviral resistance and the future landscape of hepatitis C virus infection therapy
    • Wyles, D.L., Antiviral resistance and the future landscape of hepatitis C virus infection therapy. J Infect Dis 207 (2013), S33–S39.
    • (2013) J Infect Dis , vol.207 , pp. S33-S39
    • Wyles, D.L.1
  • 19
    • 84890289271 scopus 로고    scopus 로고
    • Naturally occurring resistance mutations to inhibitors of HCV NS5A region and NS5B polymerase in DAA treatment-naive patients
    • Paolucci, S., Fiorina, L., Mariani, B., Gulminetti, R., Novati, S., Barbarini, G., et al. Naturally occurring resistance mutations to inhibitors of HCV NS5A region and NS5B polymerase in DAA treatment-naive patients. Virol J, 10, 2013, 355.
    • (2013) Virol J , vol.10 , pp. 355
    • Paolucci, S.1    Fiorina, L.2    Mariani, B.3    Gulminetti, R.4    Novati, S.5    Barbarini, G.6
  • 20
    • 84922318694 scopus 로고    scopus 로고
    • Prevalence of the hepatitis C virus NS3 polymorphism Q80K in genotype 1 patients in the European region
    • Sarrazin, C., Lathouwers, E., Peeters, M., Daems, B., Buelens, A., Witek, J., et al. Prevalence of the hepatitis C virus NS3 polymorphism Q80K in genotype 1 patients in the European region. Antiviral Res 116 (2015), 10–16.
    • (2015) Antiviral Res , vol.116 , pp. 10-16
    • Sarrazin, C.1    Lathouwers, E.2    Peeters, M.3    Daems, B.4    Buelens, A.5    Witek, J.6
  • 21
    • 0027178527 scopus 로고
    • Typing of hepatitis C virus isolates and characterization of new subtypes using a line probe assay
    • Stuyver, L., Rossau, R., Wyseur, A., Duhamel, M., Vanderborght, B., Van Heuverswyn, H., et al. Typing of hepatitis C virus isolates and characterization of new subtypes using a line probe assay. J Gen Virol 74 (1993), 1093–1102.
    • (1993) J Gen Virol , vol.74 , pp. 1093-1102
    • Stuyver, L.1    Rossau, R.2    Wyseur, A.3    Duhamel, M.4    Vanderborght, B.5    Van Heuverswyn, H.6
  • 22
    • 0028807064 scopus 로고
    • Hepatitis C virus genotyping by means of 5’-UR/core line probe assays and molecular analysis of untypeable samples
    • Stuyver, L., Wyseur, A., van Arnhem, W., Lunel, F., Laurent-Puig, P., Pawlotsky, J.M., et al. Hepatitis C virus genotyping by means of 5’-UR/core line probe assays and molecular analysis of untypeable samples. Virus Res 38 (1995), 137–157.
    • (1995) Virus Res , vol.38 , pp. 137-157
    • Stuyver, L.1    Wyseur, A.2    van Arnhem, W.3    Lunel, F.4    Laurent-Puig, P.5    Pawlotsky, J.M.6
  • 23
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 (1997), 3389–3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6
  • 24
    • 84932649981 scopus 로고    scopus 로고
    • Genotype- and subtype-independent full-genome sequencing assay for hepatitis C virus
    • Hedskog, C., Chodavarapu, K., Ku, K.S., Xu, S., Martin, R., Miller, M.D., et al. Genotype- and subtype-independent full-genome sequencing assay for hepatitis C virus. J Clin Microbiol 53 (2015), 2049–2059.
    • (2015) J Clin Microbiol , vol.53 , pp. 2049-2059
    • Hedskog, C.1    Chodavarapu, K.2    Ku, K.S.3    Xu, S.4    Martin, R.5    Miller, M.D.6
  • 25
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., Gibson, T.J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 (1994), 4673–4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 26
    • 33750387249 scopus 로고    scopus 로고
    • Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
    • Ph.D. dissertation The University of Texas at Austin
    • Zwickl, D.J., Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, 2006, The University of Texas at Austin.
    • (2006)
    • Zwickl, D.J.1
  • 27
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • Anisimova, M., Gascuel, O., Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 55 (2006), 539–552.
    • (2006) Syst Biol , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 28
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W., Gascuel, O., New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59 (2010), 307–321.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 29
    • 84921503517 scopus 로고    scopus 로고
    • Characterization of hepatitis C virus intergenotypic recombinant strains and associated virological response to sofosbuvir/ribavirin
    • Hedskog, C., Doehle, B., Chodavarapu, K., Gontcharova, V., Crespo Garcia, J., De Knegt, R., et al. Characterization of hepatitis C virus intergenotypic recombinant strains and associated virological response to sofosbuvir/ribavirin. Hepatology 61 (2015), 471–480.
    • (2015) Hepatology , vol.61 , pp. 471-480
    • Hedskog, C.1    Doehle, B.2    Chodavarapu, K.3    Gontcharova, V.4    Crespo Garcia, J.5    De Knegt, R.6
  • 30
    • 84987899470 scopus 로고    scopus 로고
    • Treatment of a patient with genotype 7 HCV infection with sofosbuvir and velpatasvir
    • Schreiber, J., McNally, J., Chodavarapu, K., Svarovskaia, E., Moreno, C., Treatment of a patient with genotype 7 HCV infection with sofosbuvir and velpatasvir. Hepatology 64:3 (2016), 983–985.
    • (2016) Hepatology , vol.64 , Issue.3 , pp. 983-985
    • Schreiber, J.1    McNally, J.2    Chodavarapu, K.3    Svarovskaia, E.4    Moreno, C.5
  • 31
    • 0034635771 scopus 로고    scopus 로고
    • The role of parenteral antischistosomal therapy in the spread of hepatitis C virus in Egypt
    • Frank, C., Mohamed, M.K., Strickland, G.T., Lavanchy, D., Arthur, R.R., Magder, L.S., et al. The role of parenteral antischistosomal therapy in the spread of hepatitis C virus in Egypt. Lancet 355 (2000), 887–891.
    • (2000) Lancet , vol.355 , pp. 887-891
    • Frank, C.1    Mohamed, M.K.2    Strickland, G.T.3    Lavanchy, D.4    Arthur, R.R.5    Magder, L.S.6
  • 32
    • 84897441196 scopus 로고    scopus 로고
    • Recent FDA approval of sofosbuvir and simeprevir. Implications for current HCV treatment
    • Lin, M.V., Chung, R., Recent FDA approval of sofosbuvir and simeprevir. Implications for current HCV treatment. Clin Liver Dis 3 (2014), 65–68.
    • (2014) Clin Liver Dis , vol.3 , pp. 65-68
    • Lin, M.V.1    Chung, R.2
  • 33
    • 84901595218 scopus 로고    scopus 로고
    • Daclatasvir plus asunaprevir for chronic HCV genotype 1b infection
    • Kumada, H., Suzuki, Y., Ikeda, K., Toyota, J., Karino, Y., Chayama, K., et al. Daclatasvir plus asunaprevir for chronic HCV genotype 1b infection. Hepatology 59 (2014), 2083–2091.
    • (2014) Hepatology , vol.59 , pp. 2083-2091
    • Kumada, H.1    Suzuki, Y.2    Ikeda, K.3    Toyota, J.4    Karino, Y.5    Chayama, K.6
  • 36
    • 34247254413 scopus 로고    scopus 로고
    • Improvement of hepatitis C virus (HCV) genotype determination with the new version of the INNO-LiPA HCV assay
    • Bouchardeau, F., Cantaloube, J.F., Chevaliez, S., Portal, C., Razer, A., Lefrere, J.J., et al. Improvement of hepatitis C virus (HCV) genotype determination with the new version of the INNO-LiPA HCV assay. J Clin Microbiol 45 (2007), 1140–1145.
    • (2007) J Clin Microbiol , vol.45 , pp. 1140-1145
    • Bouchardeau, F.1    Cantaloube, J.F.2    Chevaliez, S.3    Portal, C.4    Razer, A.5    Lefrere, J.J.6
  • 37
    • 84946413443 scopus 로고    scopus 로고
    • Diagnosis of hepatitis C virus genotype 2k/1b needs NS5B sequencing
    • De Keukeleire, S., Descheemaeker, P., Reynders, M., Diagnosis of hepatitis C virus genotype 2k/1b needs NS5B sequencing. Int J Infect Dis 41 (2015), 1–2.
    • (2015) Int J Infect Dis , vol.41 , pp. 1-2
    • De Keukeleire, S.1    Descheemaeker, P.2    Reynders, M.3
  • 38
    • 33750944590 scopus 로고    scopus 로고
    • Genotyping hepatitis C viruses from Southeast Asia by a novel line probe assay that simultaneously detects core and 5’ untranslated regions
    • Noppornpanth, S., Sablon, E., De Nys, K., Truong, X.L., Brouwer, J., Van Brussel, M., et al. Genotyping hepatitis C viruses from Southeast Asia by a novel line probe assay that simultaneously detects core and 5’ untranslated regions. J Clin Microbiol 44 (2006), 3969–3974.
    • (2006) J Clin Microbiol , vol.44 , pp. 3969-3974
    • Noppornpanth, S.1    Sablon, E.2    De Nys, K.3    Truong, X.L.4    Brouwer, J.5    Van Brussel, M.6
  • 39
  • 40
    • 84979740720 scopus 로고    scopus 로고
    • Ledipasvir plus sofosbuvir for 12 weeks in patients with hepatitis C genotype 4 infection
    • Abergel, A., Metivier, S., Samuel, D., Jiang, D., Kersey, K., Pang, P.S., et al. Ledipasvir plus sofosbuvir for 12 weeks in patients with hepatitis C genotype 4 infection. Hepatology 64:4 (2016), 1049–1056.
    • (2016) Hepatology , vol.64 , Issue.4 , pp. 1049-1056
    • Abergel, A.1    Metivier, S.2    Samuel, D.3    Jiang, D.4    Kersey, K.5    Pang, P.S.6
  • 41
    • 85014057062 scopus 로고    scopus 로고
    • NS5A resistance-associated substitutions in patients with genotype 1 hepatitis C virus: prevalence and effect on treatment outcome
    • Zeuzem, S., Mizokami, M., Pianko, S., Mangia, A., Han, K.H., Martin, R., et al. NS5A resistance-associated substitutions in patients with genotype 1 hepatitis C virus: prevalence and effect on treatment outcome. J Hepatol 66 (2017), 910–918.
    • (2017) J Hepatol , vol.66 , pp. 910-918
    • Zeuzem, S.1    Mizokami, M.2    Pianko, S.3    Mangia, A.4    Han, K.H.5    Martin, R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.