-
1
-
-
0037034017
-
The pathogenic basis of malaria
-
PMID:11832955
-
L. H. Miller, D. I. Baruch, K. Marsh, O. K. Doumbo, The pathogenic basis of malaria. Nature 415, 673-679 (2002). doi: 10.1038/415673a; PMID: 11832955
-
(2002)
Nature
, vol.415
, pp. 673-679
-
-
Miller, L.H.1
Baruch, D.I.2
Marsh, K.3
Doumbo, O.K.4
-
2
-
-
84968896486
-
-
World Health Organization, World Health Organization
-
World Health Organization, "World Malaria Report 2015" (World Health Organization, 2015); www.who.int/malaria/publications/world-malaria-report-2015/en/.
-
(2015)
World Malaria Report 2015
-
-
-
3
-
-
32944458099
-
Invasion of red blood cells by malaria parasites
-
PMID: 16497586
-
A. F. Cowman, B. S. Crabb, Invasion of red blood cells by malaria parasites. Cell 124, 755-766 (2006). doi: 10.1016/j.cell.2006.02.006; PMID: 16497586
-
(2006)
Cell
, vol.124
, pp. 755-766
-
-
Cowman, A.F.1
Crabb, B.S.2
-
4
-
-
34250743608
-
Duffy blood group and malaria
-
PMID: 17607593
-
D. M. Langhi, J. O. Bordin, Duffy blood group and malaria. Hematology 11, 389-398 (2006). doi: 10.1080/10245330500469841; PMID: 17607593
-
(2006)
Hematology
, vol.11
, pp. 389-398
-
-
Langhi, D.M.1
Bordin, J.O.2
-
5
-
-
12744268524
-
Parasite ligand-host receptor interactions during invasion of erythrocytes by Plasmodium merozoites
-
PMID: 15582519
-
D. Gaur, D. C. Mayer, L. H. Miller, Parasite ligand-host receptor interactions during invasion of erythrocytes by Plasmodium merozoites. Int. J. Parasitol. 34, 1413-1429 (2004). doi: 10.1016/j.ijpara.2004.10.010; PMID: 15582519
-
(2004)
Int. J. Parasitol.
, vol.34
, pp. 1413-1429
-
-
Gaur, D.1
Mayer, D.C.2
Miller, L.H.3
-
6
-
-
84968831232
-
Erythrocyte invasion receptors for Plasmodium falciparum: New and old
-
PMID: 26862042
-
T. J. Satchwell, Erythrocyte invasion receptors for Plasmodium falciparum: New and old. Transfus. Med. 26, 77-88 (2016). doi: 10.1111/tme.12280; PMID: 26862042
-
(2016)
Transfus. Med.
, vol.26
, pp. 77-88
-
-
Satchwell, T.J.1
-
7
-
-
84897450410
-
Plasmodium falciparum erythrocyte invasion: Combining function with immune evasion
-
PMID: 24651270
-
G. J. Wright, J. C. Rayner, Plasmodium falciparum erythrocyte invasion: Combining function with immune evasion. PLOS Pathog. 10, e1003943 (2014). doi: 10.1371/journal. ppat.1003943; PMID: 24651270
-
(2014)
PLOS Pathog.
, vol.10
, pp. e1003943
-
-
Wright, G.J.1
Rayner, J.C.2
-
9
-
-
0023567278
-
Falciparum malaria parasites invade erythrocytes that lack glycophorin A and B (MkMk)
-
PMID: 3308959
-
T. J. Hadley et al., Falciparum malaria parasites invade erythrocytes that lack glycophorin A and B (MkMk). J. Clin. Invest. 80, 1190-1193 (1987). doi: 10.1172/JCI113178; PMID: 3308959
-
(1987)
J. Clin. Invest.
, vol.80
, pp. 1190-1193
-
-
Hadley, T.J.1
-
10
-
-
0019986735
-
Glycophorin as a possible receptor for Plasmodium falciparum
-
PMID: 6127459
-
G. Pasvol et al., Glycophorin as a possible receptor for Plasmodium falciparum. Lancet 320, 947-950 (1982). doi: 10.1016/S0140-6736(82)90157-X; PMID: 6127459
-
(1982)
Lancet
, vol.320
, pp. 947-950
-
-
Pasvol, G.1
-
11
-
-
0036187509
-
Natural selection on the erythrocyte surface
-
PMID: 11861881
-
J. Baum, R. H. Ward, D. J. Conway, Natural selection on the erythrocyte surface. Mol. Biol. Evol. 19, 223-229 (2002). doi: 10.1093/oxfordjournals.molbev.a004075; PMID: 11861881
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 223-229
-
-
Baum, J.1
Ward, R.H.2
Conway, D.J.3
-
12
-
-
79958855323
-
Effects of natural selection and gene conversion on the evolution of human glycophorins coding for MNS blood polymorphisms in malaria-endemic African populations
-
PMID: 21664997
-
W. Y. Ko et al., Effects of natural selection and gene conversion on the evolution of human glycophorins coding for MNS blood polymorphisms in malaria-endemic African populations. Am. J. Hum. Genet. 88, 741-754 (2011). doi: 10.1016/j.ajhg.2011.05.005; PMID: 21664997
-
(2011)
Am. J. Hum. Genet.
, vol.88
, pp. 741-754
-
-
Ko, W.Y.1
-
13
-
-
0242414672
-
Rapidly evolving genes in human. I. The glycophorins and their possible role in evading malaria parasites
-
PMID: 12949139
-
H. Y. Wang, H. Tang, C. K. Shen, C. I. Wu, Rapidly evolving genes in human. I. The glycophorins and their possible role in evading malaria parasites. Mol. Biol. Evol. 20, 1795-1804 (2003). doi: 10.1093/molbev/msg185; PMID: 12949139
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1795-1804
-
-
Wang, H.Y.1
Tang, H.2
Shen, C.K.3
Wu, C.I.4
-
14
-
-
84944250599
-
A novel locus of resistance to severe malaria in a region of ancient balancing selection
-
PMID: 26416757
-
G. Band et al., A novel locus of resistance to severe malaria in a region of ancient balancing selection. Nature 526, 253-257 (2015). doi: 10.1038/nature15390; PMID: 26416757
-
(2015)
Nature
, vol.526
, pp. 253-257
-
-
Band, G.1
-
15
-
-
84912130160
-
BGMUT database of allelic variants of genes encoding human blood group antigens
-
PMID: 25538536
-
S. K. Patnaik, W. Helmberg, O. O. Blumenfeld, BGMUT database of allelic variants of genes encoding human blood group antigens. Transfus. Med. Hemother. 41, 346-351 (2014). doi: 10.1159/000366108; PMID: 25538536
-
(2014)
Transfus. Med. Hemother.
, vol.41
, pp. 346-351
-
-
Patnaik, S.K.1
Helmberg, W.2
Blumenfeld, O.O.3
-
16
-
-
0030795831
-
Molecular genetics of glycophorin MNS variants
-
PMID: 9269716
-
O. O. Blumenfeld, C. H. Huang, Molecular genetics of glycophorin MNS variants. Transfus. Clin. Biol. 4, 357-365 (1997). doi: 10.1016/S1246-7820(97)80041-9; PMID: 9269716
-
(1997)
Transfus. Clin. Biol.
, vol.4
, pp. 357-365
-
-
Blumenfeld, O.O.1
Huang, C.H.2
-
17
-
-
35348817330
-
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
-
PMID: 17924348
-
S. R. Browning, B. L. Browning, Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81, 1084-1097 (2007). doi: 10.1086/521987; PMID: 17924348
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 1084-1097
-
-
Browning, S.R.1
Browning, B.L.2
-
18
-
-
84871952176
-
Improved wholechromosome phasing for disease and population genetic studies
-
PMID: 23269371
-
O. Delaneau, J. F. Zagury, J. Marchini, Improved wholechromosome phasing for disease and population genetic studies. Nat. Methods 10, 5-6 (2013). doi: 10.1038/nmeth.2307; PMID: 23269371
-
(2013)
Nat. Methods
, vol.10
, pp. 5-6
-
-
Delaneau, O.1
Zagury, J.F.2
Marchini, J.3
-
20
-
-
84943171338
-
A global reference for human genetic variation
-
PMID: 26432245
-
A. Auton et al., A global reference for human genetic variation. Nature 526, 68-74 (2015). doi: 10.1038/nature15393; PMID: 26432245
-
(2015)
Nature
, vol.526
, pp. 68-74
-
-
Auton, A.1
-
21
-
-
84855989774
-
Fast computation and applications of genome mappability
-
PMID: 22276185
-
T. Derrien et al., Fast computation and applications of genome mappability. PLOS ONE 7, e30377 (2012). doi: 10.1371/journal.pone.0030377; PMID: 22276185
-
(2012)
PLOS ONE
, vol.7
, pp. e30377
-
-
Derrien, T.1
-
22
-
-
85020864145
-
-
Supplementary text is available as supplementary materials
-
Supplementary text is available as supplementary materials.
-
-
-
-
23
-
-
84943182461
-
An integrated map of structural variation in 2,504 human genomes
-
PMID: 26432246
-
P. H. Sudmant et al., An integrated map of structural variation in 2,504 human genomes. Nature 526, 75-81 (2015). doi: 10.1038/nature15394; PMID: 26432246
-
(2015)
Nature
, vol.526
, pp. 75-81
-
-
Sudmant, P.H.1
-
24
-
-
84911431761
-
Recombination initiation maps of individual human genomes
-
PMID: 25395542
-
F. Pratto et al., Recombination initiation maps of individual human genomes. Science 346, 1256442 (2014). doi: 10.1126/science.1256442; PMID: 25395542
-
(2014)
Science
, vol.346
, pp. 1256442
-
-
Pratto, F.1
-
25
-
-
84871736050
-
Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold
-
PMID: 23093610
-
A. Menelaou, J. Marchini, Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold. Bioinformatics 29, 84-91 (2013). doi: 10.1093/bioinformatics/bts632; PMID: 23093610
-
(2013)
Bioinformatics
, vol.29
, pp. 84-91
-
-
Menelaou, A.1
Marchini, J.2
-
26
-
-
33646245175
-
A map of recent positive selection in the human genome
-
PMID: 16494531
-
B. F. Voight, S. Kudaravalli, X. Wen, J. K. Pritchard, A map of recent positive selection in the human genome. PLOS Biol. 4, e72 (2006). doi: 10.1371/journal.pbio.0040072; PMID: 16494531
-
(2006)
PLOS Biol.
, vol.4
, pp. e72
-
-
Voight, B.F.1
Kudaravalli, S.2
Wen, X.3
Pritchard, J.K.4
-
27
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
PMID: 12397357
-
P. C. Sabeti et al., Detecting recent positive selection in the human genome from haplotype structure. Nature 419, 832-837 (2002). doi: 10.1038/nature01140; PMID: 12397357
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
-
28
-
-
0023230398
-
Hybrid glycophorins from human erythrocyte membranes
-
PMID: 3595615
-
W. Dahr, K. Beyreuther, J. Moulds, P. Unger, Hybrid glycophorins from human erythrocyte membranes. Eur. J. Biochem. 166, 31-36 (1987). doi: 10.1111/j.1432-1033.1987. tb13479.x; PMID: 3595615
-
(1987)
Eur. J. Biochem.
, vol.166
, pp. 31-36
-
-
Dahr, W.1
Beyreuther, K.2
Moulds, J.3
Unger, P.4
-
29
-
-
0023227928
-
Membrane glycophorins of Dantu blood group erythrocytes
-
PMID: 3305497
-
O. O. Blumenfeld, A. J. Smith, J. J. Moulds, Membrane glycophorins of Dantu blood group erythrocytes. J. Biol. Chem. 262, 11864-11870 (1987). PMID: 3305497
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 11864-11870
-
-
Blumenfeld, O.O.1
Smith, A.J.2
Moulds, J.J.3
-
30
-
-
0024245475
-
Characterization of a genomic hybrid specifying the human erythrocyte antigen Dantu: Dantu gene is duplicated and linked to a delta glycophorin gene deletion
-
PMID: 2462250
-
C. H. Huang, O. O. Blumenfeld, Characterization of a genomic hybrid specifying the human erythrocyte antigen Dantu: Dantu gene is duplicated and linked to a delta glycophorin gene deletion. Proc. Natl. Acad. Sci. U.S.A. 85, 9640-9644 (1988). doi: 10.1073/pnas.85.24.9640; PMID: 2462250
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 9640-9644
-
-
Huang, C.H.1
Blumenfeld, O.O.2
-
31
-
-
0025803834
-
Erythrocyte glycophorin B deficiency may occur by two distinct gene alterations
-
PMID: 2024643
-
C. Rahuel, J. London, A. Vignal, S. K. Ballas, J. P. Cartron, Erythrocyte glycophorin B deficiency may occur by two distinct gene alterations. Am. J. Hematol. 37, 57-58 (1991). doi: 10.1002/ajh.2830370115; PMID: 2024643
-
(1991)
Am. J. Hematol.
, vol.37
, pp. 57-58
-
-
Rahuel, C.1
London, J.2
Vignal, A.3
Ballas, S.K.4
Cartron, J.P.5
-
32
-
-
0015456160
-
S-s-U- red cell factor in Africans of Rhodesia, Malawi, Mozambique and Natal
-
PMID: 4647200
-
R. F. Lowe, P. P. Moores, S-s-U- red cell factor in Africans of Rhodesia, Malawi, Mozambique and Natal. Hum. Hered. 22, 344-350 (1972). doi: 10.1159/000152509; PMID: 4647200
-
(1972)
Hum. Hered.
, vol.22
, pp. 344-350
-
-
Lowe, R.F.1
Moores, P.P.2
-
34
-
-
67349278465
-
Genome-wide and fine-resolution association analysis of malaria in West Africa
-
PMID: 19465909
-
M. Jallow et al., Genome-wide and fine-resolution association analysis of malaria in West Africa. Nat. Genet. 41, 657-665 (2009). doi: 10.1038/ng.388; PMID: 19465909
-
(2009)
Nat. Genet.
, vol.41
, pp. 657-665
-
-
Jallow, M.1
-
35
-
-
0023190053
-
The Dantu erythrocyte phenotype of the NE variety
-
PMID: 3607293
-
W. Dahr, J. Moulds, P. Unger, M. Kordowicz, The Dantu erythrocyte phenotype of the NE variety. Blut 55, 19-31 (1987). doi: 10.1007/BF00319637; PMID: 3607293
-
(1987)
Blut
, vol.55
, pp. 19-31
-
-
Dahr, W.1
Moulds, J.2
Unger, P.3
Kordowicz, M.4
-
36
-
-
0022553543
-
The use of monoclonal antibodies to quantify the levels of sialoglycoproteins a and d and variant sialoglycoproteins in human erythrocyte membranes
-
PMID: 2420325
-
A. H. Merry, C. Hodson, E. Thomson, G. Mallinson, D. J. Anstee, The use of monoclonal antibodies to quantify the levels of sialoglycoproteins a and d and variant sialoglycoproteins in human erythrocyte membranes. Biochem. J. 233, 93-98 (1986). doi: 10.1042/bj2330093; PMID: 2420325
-
(1986)
Biochem. J.
, vol.233
, pp. 93-98
-
-
Merry, A.H.1
Hodson, C.2
Thomson, E.3
Mallinson, G.4
Anstee, D.J.5
-
37
-
-
0028053197
-
Glycophorin variants and Plasmodium falciparum: Protective effect of the Dantu phenotype in vitro
-
PMID: 8112738
-
S. P. Field, E. Hempelmann, B. V. Mendelow, A. F. Fleming, Glycophorin variants and Plasmodium falciparum: Protective effect of the Dantu phenotype in vitro. Hum. Genet. 93, 148-150 (1994). doi: 10.1007/BF00210600; PMID: 8112738
-
(1994)
Hum. Genet.
, vol.93
, pp. 148-150
-
-
Field, S.P.1
Hempelmann, E.2
Mendelow, B.V.3
Fleming, A.F.4
-
38
-
-
79952700582
-
Sixty years of antibodies to MNS system hybrid glycophorins: What have we learned?
-
PMID: 21345645
-
D. J. Heathcote, T. E. Carroll, R. L. Flower, Sixty years of antibodies to MNS system hybrid glycophorins: What have we learned? Transfus. Med. Rev. 25, 111-124 (2011). doi: 10.1016/j.tmrv.2010.11.003; PMID: 21345645
-
(2011)
Transfus. Med. Rev.
, vol.25
, pp. 111-124
-
-
Heathcote, D.J.1
Carroll, T.E.2
Flower, R.L.3
-
39
-
-
0020687599
-
Glycophorins and red cell invasion by Plasmodium falciparum
-
PMID: 6341001
-
G. Pasvol, M. Jungery, Glycophorins and red cell invasion by Plasmodium falciparum. Ciba Found. Symp. 94, 174-195 (1983). PMID: 6341001
-
(1983)
Ciba Found. Symp.
, vol.94
, pp. 174-195
-
-
Pasvol, G.1
Jungery, M.2
-
40
-
-
0020336537
-
Erythrocytes deficiency in glycophorin resist invasion by the malarial parasite Plasmodium falciparum
-
PMID: 7040988
-
G. Pasvol, J. S. Wainscoat, D. J. Weatherall, Erythrocytes deficiency in glycophorin resist invasion by the malarial parasite Plasmodium falciparum. Nature 297, 64-66 (1982). doi: 10.1038/297064a0; PMID: 7040988
-
(1982)
Nature
, vol.297
, pp. 64-66
-
-
Pasvol, G.1
Wainscoat, J.S.2
Weatherall, D.J.3
-
41
-
-
0026601423
-
A malaria invasion receptor, the 175-kilodalton erythrocyte binding antigen of Plasmodium falciparum recognizes the terminal Neu5Ac(alpha 2-3)Gal- sequences of glycophorin A
-
PMID: 1310320
-
P. A. Orlandi, F. W. Klotz, J. D. Haynes, A malaria invasion receptor, the 175-kilodalton erythrocyte binding antigen of Plasmodium falciparum recognizes the terminal Neu5Ac(alpha 2-3)Gal- sequences of glycophorin A. J. Cell Biol. 116, 901-909 (1992). doi: 10.1083/jcb.116.4.901; PMID: 1310320
-
(1992)
J. Cell Biol.
, vol.116
, pp. 901-909
-
-
Orlandi, P.A.1
Klotz, F.W.2
Haynes, J.D.3
-
42
-
-
65249096690
-
Glycophorin B is the erythrocyte receptor of Plasmodium falciparum erythrocyte-binding ligand, EBL-1
-
PMID: 19279206
-
D. C. Mayer et al., Glycophorin B is the erythrocyte receptor of Plasmodium falciparum erythrocyte-binding ligand, EBL-1. Proc. Natl. Acad. Sci. U.S.A. 106, 5348-5352 (2009). doi: 10.1073/pnas.0900878106; PMID: 19279206
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 5348-5352
-
-
Mayer, D.C.1
-
43
-
-
0028596479
-
Post-transcriptional regulation of the cell surface expression of glycophorins A, B, and e
-
PMID: 7806496
-
C. Rahuel, J. F. Elouet, J. P. Cartron, Post-transcriptional regulation of the cell surface expression of glycophorins A, B, and E. J. Biol. Chem. 269, 32752-32758 (1994). PMID: 7806496
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 32752-32758
-
-
Rahuel, C.1
Elouet, J.F.2
Cartron, J.P.3
-
44
-
-
0029921113
-
Human red blood cell Wright antigens: A genetic and evolutionary perspective on glycophorin A-band 3 interaction
-
PMID: 8611724
-
C. H. Huang, M. E. Reid, S. S. Xie, O. O. Blumenfeld, Human red blood cell Wright antigens: A genetic and evolutionary perspective on glycophorin A-band 3 interaction. Blood 87, 3942-3947 (1996). PMID: 8611724
-
(1996)
Blood
, vol.87
, pp. 3942-3947
-
-
Huang, C.H.1
Reid, M.E.2
Xie, S.S.3
Blumenfeld, O.O.4
-
45
-
-
0024094564
-
Signal transduction by glycophorin A: Role of extracellular and cytoplasmic domains in a modulatable process
-
PMID: 2844827
-
J. A. Chasis, M. E. Reid, R. H. Jensen, N. Mohandas, Signal transduction by glycophorin A: Role of extracellular and cytoplasmic domains in a modulatable process. J. Cell Biol. 107, 1351-1357 (1988). doi: 10.1083/jcb.107.4.1351; PMID: 2844827
-
(1988)
J. Cell Biol.
, vol.107
, pp. 1351-1357
-
-
Chasis, J.A.1
Reid, M.E.2
Jensen, R.H.3
Mohandas, N.4
-
46
-
-
0021266499
-
Serology and genetics of an MNSsassociated antigen Dantu
-
PMID: 6431691
-
M. Contreras et al., Serology and genetics of an MNSsassociated antigen Dantu. Vox Sang. 46, 377-386 (1984). doi: 10.1111/j.1423-0410.1984.tb00102.x; PMID: 6431691
-
(1984)
Vox Sang.
, vol.46
, pp. 377-386
-
-
Contreras, M.1
-
48
-
-
0023267767
-
The Dantu erythrocyte phenotype of the NE variety
-
PMID: 3607294
-
P. Unger et al., The Dantu erythrocyte phenotype of the NE variety. Blut 55, 33-43 (1987). doi: 10.1007/BF00319639; PMID: 3607294
-
(1987)
Blut
, vol.55
, pp. 33-43
-
-
Unger, P.1
-
49
-
-
84875508254
-
Multiple instances of ancient balancing selection shared between humans and chimpanzees
-
PMID: 23413192
-
E. M. Leffler et al., Multiple instances of ancient balancing selection shared between humans and chimpanzees. Science 339, 1578-1582 (2013). doi: 10.1126/science.1234070; PMID: 23413192
-
(2013)
Science
, vol.339
, pp. 1578-1582
-
-
Leffler, E.M.1
-
50
-
-
33748028816
-
Contrasting signatures of selection on the Plasmodium falciparum erythrocyte binding antigen gene family
-
PMID: 16837078
-
F. Verra et al., Contrasting signatures of selection on the Plasmodium falciparum erythrocyte binding antigen gene family. Mol. Biochem. Parasitol. 149, 182-190 (2006). doi: 10.1016/j.molbiopara.2006.05.010; PMID: 16837078
-
(2006)
Mol. Biochem. Parasitol.
, vol.149
, pp. 182-190
-
-
Verra, F.1
-
51
-
-
84866524806
-
Genome-wide association study indicates two novel resistance loci for severe malaria
-
PMID: 22895189
-
C. Timmann et al., Genome-wide association study indicates two novel resistance loci for severe malaria. Nature 489, 443-446 (2012). doi: 10.1038/nature11334; PMID: 22895189
-
(2012)
Nature
, vol.489
, pp. 443-446
-
-
Timmann, C.1
-
52
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
PMID: 19451168
-
H. Li, R. Durbin, Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009). doi: 10.1093/bioinformatics/btp324; PMID: 19451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
53
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
PMID: 21478889
-
M. A. DePristo et al., A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011). doi: 10.1038/ng.806; PMID: 21478889
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
-
54
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
PMID: 20644199
-
A. McKenna et al., The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010). doi: 10.1101/gr.107524.110; PMID: 20644199
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
55
-
-
84896009017
-
From FastQ data to high confidence variant calls: The Genome Analysis Toolkit best practices pipeline
-
PMID: 25431634
-
G. A. Van der Auwera et al., From FastQ data to high confidence variant calls: The Genome Analysis Toolkit best practices pipeline. Curr. Protoc. Bioinformatics 43, 11.10.1-11.10.33 (2013). doi: 10.1002/0471250953.bi1110s43; PMID: 25431634
-
(2013)
Curr. Protoc. Bioinformatics
, vol.43
, pp. 11101-111033
-
-
Van Der Auwera, G.A.1
-
56
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
PMID: 20110278
-
A. R. Quinlan, I. M. Hall, BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010). doi: 10.1093/bioinformatics/btq033; PMID: 20110278
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
58
-
-
84922288800
-
PRIMUS: Rapid reconstruction of pedigrees from genome-wide estimates of identity by descent
-
PMID: 25439724
-
J. Staples et al., PRIMUS: Rapid reconstruction of pedigrees from genome-wide estimates of identity by descent. Am. J. Hum. Genet. 95, 553-564 (2014). doi: 10.1016/j.ajhg.2014.10.005; PMID: 25439724
-
(2014)
Am. J. Hum. Genet.
, vol.95
, pp. 553-564
-
-
Staples, J.1
-
59
-
-
0027470692
-
Glycophorin B and glycophorin e genes arose from the glycophorin A ancestral gene via two duplications during primate evolution
-
PMID: 8420995
-
A. Rearden, A. Magnet, S. Kudo, M. Fukuda, Glycophorin B and glycophorin E genes arose from the glycophorin A ancestral gene via two duplications during primate evolution. J. Biol. Chem. 268, 2260-2267 (1993). PMID: 8420995
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 2260-2267
-
-
Rearden, A.1
Magnet, A.2
Kudo, S.3
Fukuda, M.4
-
60
-
-
63349085641
-
Kalign2: High-performance multiple alignment of protein and nucleotide sequences allowing external features
-
PMID: 19103665
-
T. Lassmann, O. Frings, E. L. Sonnhammer, Kalign2: High-performance multiple alignment of protein and nucleotide sequences allowing external features. Nucleic Acids Res. 37, 858-865 (2009). doi: 10.1093/nar/gkn1006; PMID: 19103665
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 858-865
-
-
Lassmann, T.1
Frings, O.2
Sonnhammer, E.L.3
-
61
-
-
84982253941
-
Analysis of protein-coding genetic variation in 60,706 humans
-
PMID: 27535533
-
M. Lek et al., Analysis of protein-coding genetic variation in 60,706 humans. Nature 536, 285-291 (2016). doi: 10.1038/nature19057; PMID: 27535533
-
(2016)
Nature
, vol.536
, pp. 285-291
-
-
Lek, M.1
-
62
-
-
84863845193
-
Genotype imputation with thousands of genomes
-
PMID: 22384356
-
B. Howie, J. Marchini, M. Stephens, Genotype imputation with thousands of genomes. G3 (Bethesda) 1, 457-470 (2011). doi: 10.1534/g3.111.001198; PMID: 22384356
-
(2011)
G3 (Bethesda)
, vol.1
, pp. 457-470
-
-
Howie, B.1
Marchini, J.2
Stephens, M.3
-
63
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genomewide association studies
-
PMID: 19543373
-
B. N. Howie, P. Donnelly, J. Marchini, A flexible and accurate genotype imputation method for the next generation of genomewide association studies. PLOS Genet. 5, e1000529 (2009). doi: 10.1371/journal.pgen.1000529; PMID: 19543373
-
(2009)
PLOS Genet.
, vol.5
, pp. e1000529
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
64
-
-
84973338712
-
The ensembl variant effect predictor
-
PMID: 27268795
-
W. McLaren et al., The Ensembl Variant Effect Predictor. Genome Biol. 17, 122 (2016). doi: 10.1186/s13059-016-0974-4; PMID: 27268795
-
(2016)
Genome Biol.
, vol.17
, pp. 122
-
-
McLaren, W.1
-
65
-
-
84908885451
-
Reappraisal of known malaria resistance loci in a large multicenter study
-
PMID: 25261933
-
K. A. Rockett et al., Reappraisal of known malaria resistance loci in a large multicenter study. Nat. Genet. 46, 1197-1204 (2014). doi: 10.1038/ng.3107; PMID: 25261933
-
(2014)
Nat. Genet.
, vol.46
, pp. 1197-1204
-
-
Rockett, K.A.1
-
66
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
PMID: 17943122
-
K. A. Frazer et al., A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-861 (2007). doi: 10.1038/nature06258; PMID: 17943122
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
Frazer, K.A.1
-
68
-
-
80051679387
-
The landscape of recombination in African Americans
-
PMID: 21775986
-
A. G. Hinch et al., The landscape of recombination in African Americans. Nature 476, 170-175 (2011). doi: 10.1038/nature10336; PMID: 21775986
-
(2011)
Nature
, vol.476
, pp. 170-175
-
-
Hinch, A.G.1
-
69
-
-
84897873840
-
Protter: Interactive protein feature visualization and integration with experimental proteomic data
-
PMID: 24162465
-
U. Omasits, C. H. Ahrens, S. Müller, B. Wollscheid, Protter: Interactive protein feature visualization and integration with experimental proteomic data. Bioinformatics 30, 884-886 (2014). doi: 10.1093/bioinformatics/btt607; PMID: 24162465
-
(2014)
Bioinformatics
, vol.30
, pp. 884-886
-
-
Omasits, U.1
Ahrens, C.H.2
Müller, S.3
Wollscheid, B.4
|