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Volumn 28, Issue 8, 2017, Pages 1132-1146

Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE 1 PROTEIN; CENTROMERE PROTEIN B; CHROMODOMAIN PROTEIN 1; NUCLEAR PROTEIN; TAS3 PROTEIN; TRANSPOSASE; UNCLASSIFIED DRUG; AGO1 PROTEIN, S POMBE; ARGONAUTE PROTEIN; CARRIER PROTEIN; CELL CYCLE PROTEIN; CHP1 PROTEIN, S POMBE; FUNGAL RNA; HETEROCHROMATIN; RETROPOSON; SCHIZOSACCHAROMYCES POMBE PROTEIN; SMALL INTERFERING RNA; TAS3 PROTEIN, S POMBE;

EID: 85018520129     PISSN: 10591524     EISSN: 19394586     Source Type: Journal    
DOI: 10.1091/mbc.E16-07-0485     Document Type: Article
Times cited : (12)

References (50)
  • 1
    • 0028011256 scopus 로고
    • Position effect variegation at fission yeast centromeres
    • Allshire RC, Javerzat JP, Redhead NJ, Cranston G (1994). Position effect variegation at fission yeast centromeres. Cell 76, 157-169.
    • (1994) Cell , vol.76 , pp. 157-169
    • Allshire, R.C.1    Javerzat, J.P.2    Redhead, N.J.3    Cranston, G.4
  • 3
    • 33746829935 scopus 로고    scopus 로고
    • The self primer of the long terminal repeat retrotransposon Tf1 is not removed during reverse transcription
    • Atwood-Moore A, Yan K, Judson RL, Levin HL (2006). The self primer of the long terminal repeat retrotransposon Tf1 is not removed during reverse transcription. J Virol 80, 8267-8271.
    • (2006) J Virol , vol.80 , pp. 8267-8271
    • Atwood-Moore, A.1    Yan, K.2    Judson, R.L.3    Levin, H.L.4
  • 4
    • 85018529183 scopus 로고    scopus 로고
    • Sequence co-evolution between RNA and protein characterized by mutual information between residue triplets published
    • Brandman R, Brandman Y, Pande VS (2012). Sequence co-evolution between RNA and protein characterized by mutual information between residue triplets published. PLoS One 10, 1371.
    • (2012) PLoS One , vol.10 , pp. 1371
    • Brandman, R.1    Brandman, Y.2    Pande, V.S.3
  • 5
    • 33847680437 scopus 로고    scopus 로고
    • Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast
    • Buker SM, Iida T, Buhler J, Villen J, Gygi SP, Nakayama J, Moazed D (2007). Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast. Nat Struct Mol Biol 14, 200-207.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 200-207
    • Buker, S.M.1    Iida, T.2    Buhler, J.3    Villen, J.4    Gygi, S.P.5    Nakayama, J.6    Moazed, D.7
  • 7
    • 38549152196 scopus 로고    scopus 로고
    • Host genome surveillance for retrotransposon by transposon-derived proteins
    • Cam HP, Noma K, Ebina H, Levin HL, Grewal SI (2008). Host genome surveillance for retrotransposon by transposon-derived proteins. Nature 451, 431-436.
    • (2008) Nature , vol.451 , pp. 431-436
    • Cam, H.P.1    Noma, K.2    Ebina, H.3    Levin, H.L.4    Grewal, S.I.5
  • 8
    • 38349103460 scopus 로고    scopus 로고
    • Convergent domestication of pogolike transposases into centromere-binding proteins in fission yeast and mammals
    • Casola C, Hucks D, Feschotte C (2008). Convergent domestication of pogolike transposases into centromere-binding proteins in fission yeast and mammals. Mol Biol Evol 25, 29-41.
    • (2008) Mol Biol Evol , vol.25 , pp. 29-41
    • Casola, C.1    Hucks, D.2    Feschotte, C.3
  • 9
  • 10
    • 41149083403 scopus 로고    scopus 로고
    • Chp1-Tas3 interaction is required to recruit RITS to fission yeast centromeres and for maintenance of centromeric heterochromatin
    • Debeauchamp JL, Moses A, Noffsinger VJP, Ulrich DL, Job G, Kosinski AM, Partridge JF (2008). Chp1-Tas3 interaction is required to recruit RITS to fission yeast centromeres and for maintenance of centromeric heterochromatin. Mol Cell Biol 28, 2154-2166.
    • (2008) Mol Cell Biol , vol.28 , pp. 2154-2166
    • Debeauchamp, J.L.1    Moses, A.2    Vjp, N.3    Ulrich, D.L.4    Job, G.5    Kosinski, A.M.6    Partridge, J.F.7
  • 11
    • 0025949412 scopus 로고
    • Nuclear targeting sequences - A consensus
    • Dingwall C, Laskey RA (1991). Nuclear targeting sequences-a consensus. Trends Biochem Sci 16, 478-481.
    • (1991) Trends Biochem Sci , vol.16 , pp. 478-481
    • Dingwall, C.1    Laskey, R.A.2
  • 12
    • 0002310241 scopus 로고    scopus 로고
    • Fission yeast chromosome analysis: Fluorescence in situ hybridisation (FISH) and chromatin immunoprecipitation (ChIP)
    • Oxford, UK: Oxford University Press
    • Ekwall K, Partridge JF (1999). Fission yeast chromosome analysis: fluorescence in situ hybridisation (FISH) and chromatin immunoprecipitation (ChIP). In: Chromosome Structural Analysis. A Practical Approach, Oxford, UK: Oxford University Press, 39-57.
    • (1999) Chromosome Structural Analysis. A Practical Approach , pp. 39-57
    • Ekwall, K.1    Partridge, J.F.2
  • 14
    • 0036223709 scopus 로고    scopus 로고
    • A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles
    • Eystathioy T, Chan EK, Tenenbaum SA, Keene JD, Griffith K, Fritzler MJ (2002). A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles. Mol Biol Cell 13, 1338-1351.
    • (2002) Mol Biol Cell , vol.13 , pp. 1338-1351
    • Eystathioy, T.1    Chan, E.K.2    Tenenbaum, S.A.3    Keene, J.D.4    Griffith, K.5    Fritzler, M.J.6
  • 15
    • 0019123502 scopus 로고
    • Translation and developmental regulation of RNA encoded by the eukaryotic transposable element copia
    • Flavell AJ, Ruby SW, Toole JJ, Roberts BE, Rubin GM (1980). Translation and developmental regulation of RNA encoded by the eukaryotic transposable element copia. Proc Natl Acad Sci USA 77, 7107-7111.
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 7107-7111
    • Flavell, A.J.1    Ruby, S.W.2    Toole, J.J.3    Roberts, B.E.4    Rubin, G.M.5
  • 16
    • 33747858422 scopus 로고    scopus 로고
    • GC-Profile: A web-based tool for visualizing and analyzing the variation of GC content in genomic sequences
    • (Web Server issue)
    • Gao F, Zhang CT (2006). GC-Profile: A web-based tool for visualizing and analyzing the variation of GC content in genomic sequences. Nucleic Acids Res 1, 34(Web Server issue), W686-W691.
    • (2006) Nucleic Acids Res , vol.1 , Issue.34 , pp. W686-W691
    • Gao, F.1    Zhang, C.T.2
  • 17
    • 84867405454 scopus 로고    scopus 로고
    • Ago hook and RNA helicase motifs underpin dual roles of SDE3 in antiviral defense and silencing of non-conserved intergenic regions
    • Garcia D, Garcia S, Pontier D, Marchais A, Renou JP, Lagrange T, Voinnet O (2012). Ago hook and RNA helicase motifs underpin dual roles of SDE3 in antiviral defense and silencing of non-conserved intergenic regions. Mol Cell 48, 109-120.
    • (2012) Mol Cell , vol.48 , pp. 109-120
    • Garcia, D.1    Garcia, S.2    Pontier, D.3    Marchais, A.4    Renou, J.P.5    Lagrange, T.6    Voinnet, O.7
  • 18
    • 33845755946 scopus 로고    scopus 로고
    • Heterochromatin revisited
    • Grewal SIS, Jia S (2007). Heterochromatin revisited. Nat Rev Genet 8, 35-46.
    • (2007) Nat Rev Genet , vol.8 , pp. 35-46
    • Sis, G.1    Jia, S.2
  • 19
    • 76749104253 scopus 로고    scopus 로고
    • Dicer-independent primal RNAs trigger RNAi and heterochromatin formation
    • Halic M, Moazed D (2010). Dicer-independent primal RNAs trigger RNAi and heterochromatin formation. Cell 140, 504-516.
    • (2010) Cell , vol.140 , pp. 504-516
    • Halic, M.1    Moazed, D.2
  • 20
    • 77956367274 scopus 로고    scopus 로고
    • Epigenetic histone modifications of human transposable elements: Genome defense versus exaptation
    • Huda A, Marino-Ramirez L, Jordan IK (2010). Epigenetic histone modifications of human transposable elements: genome defense versus exaptation. Mobile DNA 1, 2.
    • (2010) Mobile DNA , vol.1 , pp. 2
    • Huda, A.1    Marino-Ramirez, L.2    Jordan, I.K.3
  • 22
    • 0035099964 scopus 로고    scopus 로고
    • Codon bias and base composition are poor indicators of horizontally transferred genes
    • Koski LB, Morton RA, Golding GB (2001). Codon bias and base composition are poor indicators of horizontally transferred genes. Mol Biol Evol 18, 404-412.
    • (2001) Mol Biol Evol , vol.18 , pp. 404-412
    • Koski, L.B.1    Morton, R.A.2    Golding, G.B.3
  • 23
    • 67649845784 scopus 로고    scopus 로고
    • Systematic identification of yeast cell cycle-dependent nucleocytoplasmic shuttling proteins by prediction of composite motifs
    • Kosugi S, Hasebe M, Tomita M, Yanagawa H (2009). Systematic identification of yeast cell cycle-dependent nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc Natl Acad Sci USA 106, 10171-10176.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 10171-10176
    • Kosugi, S.1    Hasebe, M.2    Tomita, M.3    Yanagawa, H.4
  • 24
    • 34248596119 scopus 로고    scopus 로고
    • Coimmunoprecipitation assay
    • Lee C (2007). Coimmunoprecipitation assay. Methods Mol Biol 362, 401-406.
    • (2007) Methods Mol Biol , vol.362 , pp. 401-406
    • Lee, C.1
  • 25
    • 0025226543 scopus 로고
    • Two related families of retrotransposon from Schizosaccharomyces pombe
    • Levin HL, Weaver DC, Boeke JD (1990). Two related families of retrotransposon from Schizosaccharomyces pombe. Mol Cell Biol 10, 6791-6798.
    • (1990) Mol Cell Biol , vol.10 , pp. 6791-6798
    • Levin, H.L.1    Weaver, D.C.2    Boeke, J.D.3
  • 26
    • 84868696925 scopus 로고    scopus 로고
    • CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposon
    • Lorenz D, Mikheyeva IV, Johansen P, Meyer L, Berg A, Grewal SI, Cam HP (2012). CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposon. Mol Cell Biol 32, 4215-4225.
    • (2012) Mol Cell Biol , vol.32 , pp. 4215-4225
    • Lorenz, D.1    Mikheyeva, I.V.2    Johansen, P.3    Meyer, L.4    Berg, A.5    Grewal, S.I.6    Cam, H.P.7
  • 27
    • 72049086424 scopus 로고    scopus 로고
    • Bacterial genomic G+C composition-eliciting environmental adaptation
    • Mann S, Chen YP (2010). Bacterial genomic G+C composition-eliciting environmental adaptation. Genomics 95, 7-15.
    • (2010) Genomics , vol.95 , pp. 7-15
    • Mann, S.1    Chen, Y.P.2
  • 28
    • 33947705203 scopus 로고    scopus 로고
    • Which transposable elements are active in the human genome?
    • Mills RE, Bennett EA, Iskow RC, Devine SE (2003). Which transposable elements are active in the human genome? Trends Genet 23, 183-187.
    • (2003) Trends Genet , vol.23 , pp. 183-187
    • Mills, R.E.1    Bennett, E.A.2    Iskow, R.C.3    Devine, S.E.4
  • 29
    • 80052009948 scopus 로고    scopus 로고
    • Mechanisms for the inheritance of chromatin states
    • Moazed D (2011). Mechanisms for the inheritance of chromatin states. Cell 146, 510-518.
    • (2011) Cell , vol.146 , pp. 510-518
    • Moazed, D.1
  • 30
    • 42049088684 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real- time PCR to study transcription factor binding to DNA in Caenorhabditis elegans
    • Mukhopadhyay A, Deplancke B, Walhout AJM, Tissenbaum HA (2008). Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real- time PCR to study transcription factor binding to DNA in Caenorhabditis elegans. Nat Protocols 3, 698-709.
    • (2008) Nat Protocols , vol.3 , pp. 698-709
    • Mukhopadhyay, A.1    Deplancke, B.2    Ajm, W.3    Tissenbaum, H.A.4
  • 31
    • 23144464319 scopus 로고    scopus 로고
    • YASS: Enhancing the sensitivity of DNA similarity search
    • Noe L, Kucherov G (2005). YASS: enhancing the sensitivity of DNA similarity search. Nucleic Acids Res 33, W540-W543.
    • (2005) Nucleic Acids Res , vol.33 , pp. W540-W543
    • Noe, L.1    Kucherov, G.2
  • 33
    • 0036223709 scopus 로고    scopus 로고
    • A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles
    • Eystathioy T, Chan EK, Tenenbaum SA, Keene JD, Griffith K, Fritzler MJ (2002). A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles. Mol Biol Cell 13, 1338-1351.
    • (2002) Mol Biol Cell , vol.13 , pp. 1338-1351
    • Eystathioy, T.1    Chan, E.K.2    Tenenbaum, S.A.3    Keene, J.D.4    Griffith, K.5    Fritzler, M.J.6
  • 34
    • 0019123502 scopus 로고
    • Translation and developmental regulation of RNA encoded by the eukaryotic transposable element copia
    • Flavell AJ, Ruby SW, Toole JJ, Roberts BE, Rubin GM (1980). Translation and developmental regulation of RNA encoded by the eukaryotic transposable element copia. Proc Natl Acad Sci USA 77, 7107-7111.
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 7107-7111
    • Flavell, A.J.1    Ruby, S.W.2    Toole, J.J.3    Roberts, B.E.4    Rubin, G.M.5
  • 35
    • 33747858422 scopus 로고    scopus 로고
    • GC-Profile: A web-based tool for visualizing and analyzing the variation of GC content in genomic sequences
    • (Web Server issue)
    • Gao F, Zhang CT (2006). GC-Profile: A web-based tool for visualizing and analyzing the variation of GC content in genomic sequences. Nucleic Acids Res 1, 34(Web Server issue), W686-W691.
    • (2006) Nucleic Acids Res , vol.1 , Issue.34 , pp. W686-W691
    • Gao, F.1    Zhang, C.T.2
  • 36
    • 84867405454 scopus 로고    scopus 로고
    • Ago hook and RNA helicase motifs underpin dual roles of SDE3 in antiviral defense and silencing of non-conserved intergenic regions
    • Garcia D, Garcia S, Pontier D, Marchais A, Renou JP, Lagrange T, Voinnet O (2012). Ago hook and RNA helicase motifs underpin dual roles of SDE3 in antiviral defense and silencing of non-conserved intergenic regions. Mol Cell 48, 109-120.
    • (2012) Mol Cell , vol.48 , pp. 109-120
    • Garcia, D.1    Garcia, S.2    Pontier, D.3    Marchais, A.4    Renou, J.P.5    Lagrange, T.6    Voinnet, O.7
  • 37
    • 33845755946 scopus 로고    scopus 로고
    • Heterochromatin revisited
    • Grewal SIS, Jia S (2007). Heterochromatin revisited. Nat Rev Genet 8, 35-46.
    • (2007) Nat Rev Genet , vol.8 , pp. 35-46
    • Grewal, S.I.S.1    Jia, S.2
  • 38
    • 76749104253 scopus 로고    scopus 로고
    • Dicer-independent primal RNAs trigger RNAi and heterochromatin formation
    • Halic M, Moazed D (2010). Dicer-independent primal RNAs trigger RNAi and heterochromatin formation. Cell 140, 504-516.
    • (2010) Cell , vol.140 , pp. 504-516
    • Halic, M.1    Moazed, D.2
  • 39
    • 77956367274 scopus 로고    scopus 로고
    • Epigenetic histone modifications of human transposable elements: Genome defense versus exaptation
    • Huda A, Marino-Ramirez L, Jordan IK (2010). Epigenetic histone modifications of human transposable elements: genome defense versus exaptation. Mobile DNA 1, 2.
    • (2010) Mobile DNA , vol.1 , pp. 2
    • Huda, A.1    Marino-Ramirez, L.2    Jordan, I.K.3
  • 41
    • 0035099964 scopus 로고    scopus 로고
    • Codon bias and base composition are poor indicators of horizontally transferred genes
    • Koski LB, Morton RA, Golding GB (2001). Codon bias and base composition are poor indicators of horizontally transferred genes. Mol Biol Evol 18, 404-412.
    • (2001) Mol Biol Evol , vol.18 , pp. 404-412
    • Koski, L.B.1    Morton, R.A.2    Golding, G.B.3
  • 42
    • 67649845784 scopus 로고    scopus 로고
    • Systematic identification of yeast cell cycle-dependent nucleocytoplasmic shuttling proteins by prediction of composite motifs
    • Kosugi S, Hasebe M, Tomita M, Yanagawa H (2009). Systematic identification of yeast cell cycle-dependent nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc Natl Acad Sci USA 106, 10171-10176.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 10171-10176
    • Kosugi, S.1    Hasebe, M.2    Tomita, M.3    Yanagawa, H.4
  • 43
    • 34248596119 scopus 로고    scopus 로고
    • Coimmunoprecipitation assay
    • Lee C (2007). Coimmunoprecipitation assay. Methods Mol Biol 362, 401-406.
    • (2007) Methods Mol Biol , vol.362 , pp. 401-406
    • Lee, C.1
  • 44
    • 0025226543 scopus 로고
    • Two related families of retrotransposon from Schizosaccharomyces pombe
    • Levin HL, Weaver DC, Boeke JD (1990). Two related families of retrotransposon from Schizosaccharomyces pombe. Mol Cell Biol 10, 6791-6798.
    • (1990) Mol Cell Biol , vol.10 , pp. 6791-6798
    • Levin, H.L.1    Weaver, D.C.2    Boeke, J.D.3
  • 45
    • 84868696925 scopus 로고    scopus 로고
    • CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposon
    • Lorenz D, Mikheyeva IV, Johansen P, Meyer L, Berg A, Grewal SI, Cam HP (2012). CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposon. Mol Cell Biol 32, 4215-4225.
    • (2012) Mol Cell Biol , vol.32 , pp. 4215-4225
    • Lorenz, D.1    Mikheyeva, I.V.2    Johansen, P.3    Meyer, L.4    Berg, A.5    Grewal, S.I.6    Cam, H.P.7
  • 46
    • 72049086424 scopus 로고    scopus 로고
    • Bacterial genomic G+C composition-eliciting environmental adaptation
    • Mann S, Chen YP (2010). Bacterial genomic G+C composition-eliciting environmental adaptation. Genomics 95, 7-15.
    • (2010) Genomics , vol.95 , pp. 7-15
    • Mann, S.1    Chen, Y.P.2
  • 47
    • 33947705203 scopus 로고    scopus 로고
    • Which transposable elements are active in the human genome?
    • Mills RE, Bennett EA, Iskow RC, Devine SE (2003). Which transposable elements are active in the human genome? Trends Genet 23, 183-187.
    • (2003) Trends Genet , vol.23 , pp. 183-187
    • Mills, R.E.1    Bennett, E.A.2    Iskow, R.C.3    Devine, S.E.4
  • 48
    • 80052009948 scopus 로고    scopus 로고
    • Mechanisms for the inheritance of chromatin states
    • Moazed D (2011). Mechanisms for the inheritance of chromatin states. Cell 146, 510-518.
    • (2011) Cell , vol.146 , pp. 510-518
    • Moazed, D.1
  • 49
    • 42049088684 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real- time PCR to study transcription factor binding to DNA in Caenorhabditis elegans
    • Mukhopadhyay A, Deplancke B, Walhout AJM, Tissenbaum HA (2008). Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real- time PCR to study transcription factor binding to DNA in Caenorhabditis elegans. Nat Protocols 3, 698-709.
    • (2008) Nat Protocols , vol.3 , pp. 698-709
    • Mukhopadhyay, A.1    Deplancke, B.2    Walhout, A.J.M.3    Tissenbaum, H.A.4
  • 50
    • 23144464319 scopus 로고    scopus 로고
    • YASS: Enhancing the sensitivity of DNA similarity search
    • Noe L, Kucherov G (2005). YASS: enhancing the sensitivity of DNA similarity search. Nucleic Acids Res 33, W540-W543.
    • (2005) Nucleic Acids Res , vol.33 , pp. W540-W543
    • Noe, L.1    Kucherov, G.2


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