Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study

PLoS ONE

Volumn 12, Issue 4, 2017, Pages

  Pammi, Mohan ^a   O'Brien, Jacqueline L ^a   Ajami, Nadim J ^a   Wong, Matthew C ^a   Versalovic, James ^a   Petrosino, Joseph F ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; RNA 16S; ANTIINFECTIVE AGENT;

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL MICROBIOME; BACTERIAL STRUCTURES; CLINICAL ARTICLE; CONTROLLED STUDY; ELBOW; FEMALE; FOREHEAD; GENE AMPLIFICATION; GLUTEUS MUSCLE; HUMAN; INFANT; LONGITUDINAL STUDY; MALE; PREMATURITY; PROSPECTIVE STUDY; SKIN FLORA; GESTATIONAL AGE; MICROBIOLOGY; MICROFLORA; NEONATAL SEPSIS; NEWBORN; SKIN; STATISTICAL MODEL;

ANTI-BACTERIAL AGENTS; FEMALE; GESTATIONAL AGE; HUMANS; INFANT, NEWBORN; INFANT, PREMATURE; LINEAR MODELS; LONGITUDINAL STUDIES; MALE; MICROBIOTA; NEONATAL SEPSIS; SKIN;

EID: 85018273154     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0176669     Document Type: Article

References (33)

1. Gao Z, Tseng CH, Pei Z, Blaser MJ (2007) Molecular analysis of human forearm superficial skin bacterial biota. Proc Natl Acad Sci U S A 104: 2927-2932. https://doi.org/10.1073/pnas.0607077104 PMID: 17293459
2. Grice EA, Segre JA (2011) The skin microbiome. Nat Rev Microbiol 9: 244-253. https://doi.org/10.1038/nrmicro2537 PMID: 21407241
3. Capone KA, Dowd SE, Stamatas GN, Nikolovski J (2011) Diversity of the human skin microbiome early in life. J Invest Dermatol 131: 2026-2032. https://doi.org/10.1038/jid.2011.168 PMID: 21697884
4. Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A 107: 11971-11975. https://doi.org/10.1073/pnas.1002601107 PMID: 20566857
5. Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, et al. (2014) Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome 2: 1. https://doi. org/10.1186/2049-2618-2-1 PMID: 24468033
6. Grice EA, Segre JA (2012) The human microbiome: our second genome. Annu Rev Genomics Hum Genet 13: 151-170. https://doi.org/10.1146/annurev-genom-090711-163814 PMID: 22703178
7. Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC, et al. (2009) Topographical and temporal diversity of the human skin microbiome. Science 324: 1190-1192. https://doi.org/10.1126/science. 1171700 PMID: 19478181
8. Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R (2009) Bacterial community variation in human body habitats across space and time. Science 326: 1694-1697. https://doi.org/10.1126/science.1177486 PMID: 19892944
9. Capone KA, Dowd SE, Stamatas GN, Nikolovski J Diversity of the Human Skin Microbiome Early in Life. J Invest Dermatol.
10. Stamatas GN, Nikolovski J, Mack MC, Kollias N Infant skin physiology and development during the first years of life: a review of recent findings based on in vivo studies. Int J Cosmet Sci 33: 17-24. https://doi.org/10.1111/j.1468-2494.2010.00611.x PMID: 20807257
11. Stamatas GN, Nikolovski J, Luedtke MA, Kollias N, Wiegand BC Infant skin microstructure assessed in vivo differs from adult skin in organization and at the cellular level. Pediatr Dermatol 27: 125-131. https://doi.org/10.1111/j.1525-1470.2009.00973.x PMID: 19804498
12. Nikolovski J, Stamatas GN, Kollias N, Wiegand BC (2008) Barrier function and water-holding and transport properties of infant stratum corneum are different from adult and continue to develop through the first year of life. J Invest Dermatol 128: 1728-1736. https://doi.org/10.1038/sj.jid.5701239 PMID: 18200056
13. Stoll BJ, Hansen N, Fanaroff AA, Wright LL, Carlo WA, Ehrenkranz RA, et al. (2002) Late-onset sepsis in very low birth weight neonates: the experience of the NICHD Neonatal Research Network. Pediatrics 110: 285-291. PMID: 12165580
14. Round JL, O'Connell RM, Mazmanian SK Coordination of tolerogenic immune responses by the commensal microbiota. J Autoimmun 34: J220-225. https://doi.org/10.1016/j.jaut.2009.11.007 PMID: 19963349
15. Naik S, Bouladoux N, Wilhelm C, Molloy MJ, Salcedo R, Kastenmuller W, et al. (2012) Compartmentalized control of skin immunity by resident commensals. Science 337: 1115-1119. https://doi.org/10.1126/science.1225152 PMID: 22837383
16. Human Microbiome Project C (2012) Structure, function and diversity of the healthy human microbiome. Nature 486: 207-214. https://doi.org/10.1038/nature11234 PMID: 22699609
17. Jumpstart Consortium Human Microbiome Project Data Generation Working G (2012) Evaluation of 16S rDNA-based community profiling for human microbiome research. PLoS One 7: e39315. https://doi.org/10.1371/journal.pone.0039315 PMID: 22720093
18. Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461. https://doi.org/10.1093/bioinformatics/btq461 PMID: 20709691
19. Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41: D590-596. https://doi.org/10.1093/nar/gks1219 PMID: 23193283
20. team RDc (2014) A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
21. McMurdie PJ, Holmes S (2013) phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One 8: e61217. https://doi.org/10.1371/journal.pone.0061217 PMID: 23630581
22. La Rosa PS, Warner BB, Zhou Y, Weinstock GM, Sodergren E, Hall-Moore CM, et al. (2014) Patterned progression of bacterial populations in the premature infant gut. Proc Natl Acad Sci U S A 111: 12522-12527. https://doi.org/10.1073/pnas.1409497111 PMID: 25114261
23. Chiou YB, Blume-Peytavi U (2004) Stratum corneum maturation. A review of neonatal skin function. Skin Pharmacol Physiol 17: 57-66. https://doi.org/10.1159/000076015 PMID: 14976382
24. Arrieta MC, Stiemsma LT, Amenyogbe N, Brown EM, Finlay B (2014) The intestinal microbiome in early life: health and disease. Front Immunol 5: 427. https://doi.org/10.3389/fimmu.2014.00427 PMID: 25250028
25. Marchini G, Nelson A, Edner J, Lonne-Rahm S, Stavreus-Evers A, Hultenby K (2005) Erythema toxicum neonatorum is an innate immune response to commensal microbes penetrated into the skin of the newborn infant. Pediatr Res 58: 613-616. https://doi.org/10.1203/01.pdr.0000176836.27156.32 PMID: 16148082
26. Lai Y, Di Nardo A, Nakatsuji T, Leichtle A, Yang Y, Cogen AL, et al. (2009) Commensal bacteria regulate Toll-like receptor 3-dependent inflammation after skin injury. Nat Med 15: 1377-1382. https://doi. org/10.1038/nm.2062 PMID: 19966777
27. Iwase T, Uehara Y, Shinji H, Tajima A, Seo H, Takada K, et al. Staphylococcus epidermidis Esp inhibits Staphylococcus aureus biofilm formation and nasal colonization. Nature 465: 346-349. https://doi.org/10.1038/nature09074 PMID: 20485435
28. Hirasawa Y, Takai T, Nakamura T, Mitsuishi K, Gunawan H, Suto H, et al. Staphylococcus aureus extracellular protease causes epidermal barrier dysfunction. J Invest Dermatol 130: 614-617. https://doi.org/10.1038/jid.2009.257 PMID: 19812593
29. McGuire MK, McGuire MA (2015) Human Milk: Mother Nature's Prototypical Probiotic Food? Adv Nutr 6: 112-123. https://doi.org/10.3945/an.114.007435 PMID: 25593150
30. Pacheco AR, Barile D, Underwood MA, Mills DA (2014) The Impact of the Milk Glycobiome on the Neonate Gut Microbiota. Annu Rev Anim Biosci.
31. Aagaard K, Ma J, Antony KM, Ganu R, Petrosino J, Versalovic J (2014) The placenta harbors a unique microbiome. Sci Transl Med 6: 237ra265.
32. Dominguez-Bello MG, De Jesus-Laboy KM, Shen N, Cox LM, Amir A, Gonzalez A, et al. (2016) Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer. Nat Med 22: 250-253. https://doi.org/10.1038/nm.4039 PMID: 26828196
33. Krutmann J (2009) Pre-and probiotics for human skin. J Dermatol Sci 54: 1-5. https://doi.org/10.1016/j.jdermsci.2009.01.002 PMID: 19203862