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Volumn 1, Issue 1, 2015, Pages

Genetics of RA susceptibility, what comes next?

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EID: 85018193228     PISSN: None     EISSN: 20565933     Source Type: Journal    
DOI: 10.1136/rmdopen-2014-000028     Document Type: Review
Times cited : (9)

References (45)
  • 1
    • 0023500817 scopus 로고
    • The shared epitope hypothesis. An approach to understanding the molecular genetics of susceptibility to rheumatoid arthritis
    • Gregersen PK, Silver J, Winchester RJ. The shared epitope hypothesis. An approach to understanding the molecular genetics of susceptibility to rheumatoid arthritis. Arthritis Rheum 1987;30:1205-13.
    • (1987) Arthritis Rheum , vol.30 , pp. 1205-1213
    • Gregersen, P.K.1    Silver, J.2    Winchester, R.J.3
  • 2
    • 84862776511 scopus 로고    scopus 로고
    • Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis
    • Raychaudhuri S, Sandor C, Stahl EA, et al. Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis. Nat Genet 2012;44:291-6.
    • (2012) Nat Genet , vol.44 , pp. 291-296
    • Raychaudhuri, S.1    Sandor, C.2    Stahl, E.A.3
  • 3
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • The Welcome Trust Case Control Consortium
    • The Welcome Trust Case Control Consortium. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007;447:661-78.
    • (2007) Nature , vol.447 , pp. 661-678
  • 4
  • 5
    • 84894288992 scopus 로고    scopus 로고
    • Genetics of rheumatoid arthritis contributes to biology and drug discovery
    • Okada Y, Wu D, Trynka G, et al. Genetics of rheumatoid arthritis contributes to biology and drug discovery. Nature 2013;506:376-81.
    • (2013) Nature , vol.506 , pp. 376-381
    • Okada, Y.1    Wu, D.2    Trynka, G.3
  • 6
    • 67249117049 scopus 로고    scopus 로고
    • Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
    • Hindorff LA, Sethupathy P, Junkins HA, et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci USA 2009;106:9362-7.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9362-9367
    • Hindorff, L.A.1    Sethupathy, P.2    Junkins, H.A.3
  • 7
    • 84855363144 scopus 로고    scopus 로고
    • Long-range DNA looping and gene expression analyses identify DEXI as an autoimmune disease candidate gene
    • Davison LJ, Wallace C, Cooper JD, et al. Long-range DNA looping and gene expression analyses identify DEXI as an autoimmune disease candidate gene. Hum Mol Genet 2012;21:322-33.
    • (2012) Hum Mol Genet , vol.21 , pp. 322-333
    • Davison, L.J.1    Wallace, C.2    Cooper, J.D.3
  • 8
    • 77955499945 scopus 로고    scopus 로고
    • From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus
    • Musunuru K, Strong A, Frank-Kamenetsky M, et al. From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus. Nature 2010;466:714-19.
    • (2010) Nature , vol.466 , pp. 714-719
    • Musunuru, K.1    Strong, A.2    Frank-Kamenetsky, M.3
  • 9
    • 84923326765 scopus 로고    scopus 로고
    • Genetic and epigenetic fine mapping of causal autoimmune disease variants
    • Farh KK, Marson A, Zhu J, et al. Genetic and epigenetic fine mapping of causal autoimmune disease variants. Nature 2015;518:337-43.
    • (2015) Nature , vol.518 , pp. 337-343
    • Farh, K.K.1    Marson, A.2    Zhu, J.3
  • 10
    • 84888015137 scopus 로고    scopus 로고
    • Super-enhancers in the control of cell identity and disease
    • Hnisz D, Abraham BJ, Lee TI, et al. Super-enhancers in the control of cell identity and disease. Cell 2013;155:934-47.
    • (2013) Cell , vol.155 , pp. 934-947
    • Hnisz, D.1    Abraham, B.J.2    Lee, T.I.3
  • 11
    • 84903697261 scopus 로고    scopus 로고
    • Enhancer function: Mechanistic and genome-wide insights come together
    • Plank JL, Dean A. Enhancer function: mechanistic and genome-wide insights come together. Mol Cell 2014;55:5-14.
    • (2014) Mol Cell , vol.55 , pp. 5-14
    • Plank, J.L.1    Dean, A.2
  • 12
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Bernstein BE, Birney E, Dunham I, et al. An integrated encyclopedia of DNA elements in the human genome. Nature 2012;489:57-74.
    • (2012) Nature , vol.489 , pp. 57-74
    • Bernstein, B.E.1    Birney, E.2    Dunham, I.3
  • 13
    • 84907212706 scopus 로고    scopus 로고
    • LncRBase: An enriched resource for lncRNA information
    • Chakraborty S, Deb A, Maji RK, et al. LncRBase: an enriched resource for lncRNA information. PLoS ONE 2014;9:e108010.
    • (2014) PLoS ONE , vol.9 , pp. e108010
    • Chakraborty, S.1    Deb, A.2    Maji, R.K.3
  • 14
    • 79953858658 scopus 로고    scopus 로고
    • No-nonsense functions for long noncoding RNAs
    • Nagano T, Fraser P. No-nonsense functions for long noncoding RNAs. Cell 2011;145:178-81.
    • (2011) Cell , vol.145 , pp. 178-181
    • Nagano, T.1    Fraser, P.2
  • 15
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010;26:841-2.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 16
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili MN, Trapnell C, Goff L, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011;25:1915-27.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3
  • 17
    • 84891798006 scopus 로고    scopus 로고
    • NONCODEv4: Exploring the world of long non-coding RNA genes
    • Xie C, Yuan J, Li H, et al. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res 2014;42:D98-103.
    • (2014) Nucleic Acids Res , vol.42 , pp. D98-D103
    • Xie, C.1    Yuan, J.2    Li, H.3
  • 18
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Article published online before print in May 2002
    • Kent WJ, Sugnet CW, Furey TS, et al. The human genome browser at UCSC. Genome Res 2002;12:996-1006. doi:10.1101/gr.229102. Article published online before print in May 2002
    • (2002) Genome Res , vol.12 , pp. 996-1006
    • Kent, W.J.1    Sugnet, C.W.2    Furey, T.S.3
  • 19
    • 84875530540 scopus 로고    scopus 로고
    • LNCipedia: A database for annotated human lncRNA transcript sequences and structures
    • Volders PJ, Helsens K, Wang X, et al. LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res 2013;41:D246-51.
    • (2013) Nucleic Acids Res , vol.41 , pp. D246-D251
    • Volders, P.J.1    Helsens, K.2    Wang, X.3
  • 20
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • Guttman M, Rinn JL. Modular regulatory principles of large non-coding RNAs. Nature 2012;482:339-46.
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 21
    • 84874368349 scopus 로고    scopus 로고
    • Activating RNAs associate with mediator to enhance chromatin architecture and transcription
    • Lai F, Orom UA, Cesaroni M, et al. Activating RNAs associate with mediator to enhance chromatin architecture and transcription. Nature 2013;494:497-501.
    • (2013) Nature , vol.494 , pp. 497-501
    • Lai, F.1    Orom, U.A.2    Cesaroni, M.3
  • 22
    • 77951118936 scopus 로고    scopus 로고
    • Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
    • Gupta RA, Shah N, Wang KC, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010;464:1071-6.
    • (2010) Nature , vol.464 , pp. 1071-1076
    • Gupta, R.A.1    Shah, N.2    Wang, K.C.3
  • 23
    • 84904735424 scopus 로고    scopus 로고
    • Transcriptional regulatory functions of nuclear long noncoding RNAs
    • Vance KW, Ponting CP. Transcriptional regulatory functions of nuclear long noncoding RNAs. Trends Genet 2014;30:348-55.
    • (2014) Trends Genet , vol.30 , pp. 348-355
    • Vance, K.W.1    Ponting, C.P.2
  • 24
    • 84861402632 scopus 로고    scopus 로고
    • An RNA-independent linkage of noncoding transcription to long-range enhancer function
    • Yoo EJ, Cooke NE, Liebhaber SA. An RNA-independent linkage of noncoding transcription to long-range enhancer function. Mol Cell Biol 2012;32:2020-9.
    • (2012) Mol Cell Biol , vol.32 , pp. 2020-2029
    • Yoo, E.J.1    Cooke, N.E.2    Liebhaber, S.A.3
  • 25
    • 84899923763 scopus 로고    scopus 로고
    • Interleukin-6 and tumour necrosis factor-α differentially regulate lincRNA transcripts in cells of the innate immune system in vivo in human subjects with rheumatoid arthritis
    • Müller N, Döring F, Klapper M, et al. Interleukin-6 and tumour necrosis factor-α differentially regulate lincRNA transcripts in cells of the innate immune system in vivo in human subjects with rheumatoid arthritis. Cytokine 2014;68:65-8.
    • (2014) Cytokine , vol.68 , pp. 65-68
    • Müller, N.1    Döring, F.2    Klapper, M.3
  • 26
    • 84873489136 scopus 로고    scopus 로고
    • Human disease-associated genetic variation impacts large intergenic non-coding RNA expression
    • Kumar V, Westra HJ, Karjalainen J, et al. Human disease-associated genetic variation impacts large intergenic non-coding RNA expression. PLoS Genet 2013;9:e1003201.
    • (2013) PLoS Genet , vol.9 , pp. e1003201
    • Kumar, V.1    Westra, H.J.2    Karjalainen, J.3
  • 27
    • 84946065958 scopus 로고    scopus 로고
    • LncRNASNP: A database of SNPs in lncRNAs and their potential functions in human and mouse
    • Database issue)
    • Gong J, Liu W, Zhang J, et al. lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. Nucleic Acids Res 2015;43(Database issue):D181-6.
    • (2015) Nucleic Acids Res , vol.43 , pp. D181-D186
    • Gong, J.1    Liu, W.2    Zhang, J.3
  • 29
    • 84865760395 scopus 로고    scopus 로고
    • GENCODE: The reference human genome annotation for the ENCODE Project
    • Harrow J, Frankish A, Gonzalez JM, et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res 2012;22:1760-74.
    • (2012) Genome Res , vol.22 , pp. 1760-1774
    • Harrow, J.1    Frankish, A.2    Gonzalez, J.M.3
  • 30
    • 84876566914 scopus 로고    scopus 로고
    • ChIPBase: A database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
    • Database issue)
    • Yang JH, Li JH, Jiang S, et al. ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res 2013;41(Database issue):D177-87.
    • (2013) Nucleic Acids Res , vol.41 , pp. D177-D187
    • Yang, J.H.1    Li, J.H.2    Jiang, S.3
  • 31
    • 84891767394 scopus 로고    scopus 로고
    • RefSeq: An update on mammalian reference sequences
    • (Database issue)
    • Pruitt KD, Brown GR, Hiatt SM, et al. RefSeq: an update on mammalian reference sequences. Nucleic Acids Res 2014;42 (Database issue):D756-63.
    • (2014) Nucleic Acids Res , vol.42 , pp. D756-D763
    • Pruitt, K.D.1    Brown, G.R.2    Hiatt, S.M.3
  • 32
    • 84884594782 scopus 로고    scopus 로고
    • A global map for dissecting phenotypic variants in human lincRNAs
    • Ning S, Wang P, Ye J, et al. A global map for dissecting phenotypic variants in human lincRNAs. Eur J Hum Genet 2013;21:1128-33.
    • (2013) Eur J Hum Genet , vol.21 , pp. 1128-1133
    • Ning, S.1    Wang, P.2    Ye, J.3
  • 33
    • 84946013175 scopus 로고    scopus 로고
    • LncRNAdb v2.0: Expanding the reference database for functional long noncoding RNAs
    • (Database issue)
    • Quek XC, Thomson DW, Maag JL, et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res 2015;43(Database issue):D168-73.
    • (2015) Nucleic Acids Res , vol.43 , pp. D168-D173
    • Quek, X.C.1    Thomson, D.W.2    Maag, J.L.3
  • 34
    • 84921353503 scopus 로고    scopus 로고
    • Considerations when investigating lncRNA function in vivo
    • Bassett AR, Akhtar A, Barlow DP, et al. Considerations when investigating lncRNA function in vivo. Elife 2014;3:e03058.
    • (2014) Elife , vol.3 , pp. e03058
    • Bassett, A.R.1    Akhtar, A.2    Barlow, D.P.3
  • 35
    • 84859211025 scopus 로고    scopus 로고
    • Combined RNAi and localization for functionally dissecting long noncoding RNAs
    • Chakraborty D, Kappei D, Theis M, et al. Combined RNAi and localization for functionally dissecting long noncoding RNAs. Nat Methods 2012;9:360-2.
    • (2012) Nat Methods , vol.9 , pp. 360-362
    • Chakraborty, D.1    Kappei, D.2    Theis, M.3
  • 36
    • 84899450857 scopus 로고    scopus 로고
    • Transcriptional enhancers: From properties to genome-wide predictions
    • Shlyueva D, Stampfel G, Stark A. Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet 2014;15:272-86.
    • (2014) Nat Rev Genet , vol.15 , pp. 272-286
    • Shlyueva, D.1    Stampfel, G.2    Stark, A.3
  • 38
    • 80054756754 scopus 로고    scopus 로고
    • Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
    • Chu C, Qu K, Zhong FL, et al. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell 2011;44:667-78.
    • (2011) Mol Cell , vol.44 , pp. 667-678
    • Chu, C.1    Qu, K.2    Zhong, F.L.3
  • 39
    • 79959946169 scopus 로고    scopus 로고
    • Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
    • Kudla G, Granneman S, Hahn D, et al. Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc Natl Acad Sci USA 2011;108:10010-15.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10010-10015
    • Kudla, G.1    Granneman, S.2    Hahn, D.3
  • 40
    • 84894233636 scopus 로고    scopus 로고
    • ICLIP: Protein-RNA interactions at nucleotide resolution
    • Huppertz I, Attig J, D'Ambrogio A, et al. iCLIP: protein-RNA interactions at nucleotide resolution. Methods 2014;65:274-87.
    • (2014) Methods , vol.65 , pp. 274-287
    • Huppertz, I.1    Attig, J.2    D'Ambrogio, A.3
  • 41
    • 84907536806 scopus 로고    scopus 로고
    • RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites
    • Engreitz JM, Sirokman K, McDonel P, et al. RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites. Cell 2014;159:188-99.
    • (2014) Cell , vol.159 , pp. 188-199
    • Engreitz, J.M.1    Sirokman, K.2    McDonel, P.3
  • 42
    • 84879642373 scopus 로고    scopus 로고
    • The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome
    • Engreitz JM, Pandya-Jones A, McDonel P, et al. The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome. Science 2013;341:1237973.
    • (2013) Science , vol.341 , pp. 1237973
    • Engreitz, J.M.1    Pandya-Jones, A.2    McDonel, P.3
  • 43
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • Rinn JL, Kertesz M, Wang JK, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007;129:1311-23.
    • (2007) Cell , vol.129 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3
  • 44
    • 54049138948 scopus 로고    scopus 로고
    • Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
    • Pandey RR, Mondal T, Mohammad F, et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell 2008;32:232-46.
    • (2008) Mol Cell , vol.32 , pp. 232-246
    • Pandey, R.R.1    Mondal, T.2    Mohammad, F.3
  • 45
    • 39549103642 scopus 로고    scopus 로고
    • Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
    • Mariner PD, Walters RD, Espinoza CA, et al. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol Cell 2008;29:499-509.
    • (2008) Mol Cell , vol.29 , pp. 499-509
    • Mariner, P.D.1    Walters, R.D.2    Espinoza, C.A.3


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