-
1
-
-
84982258435
-
Windex: Analyzing convergent evolution using the Wheatsheaf index in R
-
Arbuckle K, Minter A (2015) Windex: analyzing convergent evolution using the Wheatsheaf index in R. Evol Bioinform 11:11-14
-
(2015)
Evol Bioinform
, vol.11
, pp. 11-14
-
-
Arbuckle, K.1
Minter, A.2
-
2
-
-
84904329335
-
A simple measure of the strength of convergent evolution
-
Arbuckle K, Bennett CM, Speed MP (2014) A simple measure of the strength of convergent evolution. Methods Ecol Evol 5:685-693
-
(2014)
Methods Ecol Evol
, vol.5
, pp. 685-693
-
-
Arbuckle, K.1
Bennett, C.M.2
Speed, M.P.3
-
3
-
-
84882742839
-
Identifying hidden rate changes in the evolution of a binary morphological character: The evolution of plant habitat in campanulid angiosperms
-
Beaulieu JM, O’Meara BC, Donoghue MJ (2013) Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habitat in campanulid angiosperms. Syst Biol 62:725-737
-
(2013)
Syst Biol
, vol.62
, pp. 725-737
-
-
Beaulieu, J.M.1
O’Meara, B.C.2
Donoghue, M.J.3
-
4
-
-
11944264347
-
Phylogenetic comparative analysis: A modeling approach for adaptive evolution
-
Butler MA, King AA (2004) Phylogenetic comparative analysis: a modeling approach for adaptive evolution. American Naturalist 164:683-695
-
(2004)
American Naturalist
, vol.164
, pp. 683-695
-
-
Butler, M.A.1
King, A.A.2
-
6
-
-
0031880429
-
Reconstructing ancestral character states: A critical reappraisal
-
Cunningham CW, Omland KE, Oakley TH (1998) Reconstructing ancestral character states: a critical reappraisal. Trends Ecol Evol 13:361-366
-
(1998)
Trends Ecol Evol
, vol.13
, pp. 361-366
-
-
Cunningham, C.W.1
Omland, K.E.2
Oakley, T.H.3
-
7
-
-
84957037100
-
Keeping yourself updated: Bayesian approaches in phylogenetic comparative methods with a focus on Markov chain models of discrete character evolution
-
Garamszegi LZ (ed), Springer-Verlag, Berlin, Heidelberg
-
Currie TE, Meade A (2014) Keeping yourself updated: bayesian approaches in phylogenetic comparative methods with a focus on Markov chain models of discrete character evolution. In Garamszegi LZ (ed) Modern phylogenetic comparative methods and their application in evolutionary biology: concepts and practice, Springer-Verlag, Berlin, Heidelberg
-
(2014)
Modern phylogenetic comparative methods and their application in evolutionary biology: Concepts and practice
-
-
Currie, T.E.1
Meade, A.2
-
9
-
-
0027983037
-
Convergent evolution: The need to be explicit
-
Doolittle RF (1994) Convergent evolution: the need to be explicit. Trends Biochem Sci 19:15-18
-
(1994)
Trends Biochem Sci
, vol.19
, pp. 15-18
-
-
Doolittle, R.F.1
-
10
-
-
0024181337
-
Phylogenies and quantitative characters
-
Felsenstein J (1988) Phylogenies and quantitative characters. Annu Rev Ecol Syst 19:445-471
-
(1988)
Annu Rev Ecol Syst
, vol.19
, pp. 445-471
-
-
Felsenstein, J.1
-
11
-
-
84924078627
-
Convergent evolution of the genomes of marine mammals
-
Foote AD, Liu Y, Thomas GWC, Vinař T, Alföldi J, Deng J, Dugan S, van Elk CE, Hunter ME, Joshi V, Khan Z, Kovar C, Lee SL, Lindblad-Toh K, Mancia A et al (2015) Convergent evolution of the genomes of marine mammals. Nat Genet 47:272-275
-
(2015)
Nat Genet
, vol.47
, pp. 272-275
-
-
Foote, A.D.1
Liu, Y.2
Thomas, G.W.C.3
Vinař, T.4
Alföldi, J.5
Deng, J.6
Dugan, S.7
van Elk, C.E.8
Hunter, M.E.9
Joshi, V.10
Khan, Z.11
Kovar, C.12
Lee, S.L.13
Lindblad-Toh, K.14
Mancia, A.15
-
13
-
-
0030772835
-
Stabilizing selection and the comparative analysis of adaptation
-
Hansen TF (1997) Stabilizing selection and the comparative analysis of adaptation. Evolution 51:1341-1351
-
(1997)
Evolution
, vol.51
, pp. 1341-1351
-
-
Hansen, T.F.1
-
14
-
-
84877917356
-
SURFACE: Detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise AIC
-
Ingram T, Mahler DL (2013) SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise AIC. Methods Ecol Evol 4:416-425
-
(2013)
Methods Ecol Evol
, vol.4
, pp. 416-425
-
-
Ingram, T.1
Mahler, D.L.2
-
16
-
-
79959981709
-
Convergence, adaptation, and constraint
-
Losos JB (2011) Convergence, adaptation, and constraint. Evolution 65:1827-1840
-
(2011)
Evolution
, vol.65
, pp. 1827-1840
-
-
Losos, J.B.1
-
17
-
-
84923404983
-
The unsolved challenge to phylogenetic correlation tests for categorical characters
-
Maddison WP, FitzJohn RG (2015) The unsolved challenge to phylogenetic correlation tests for categorical characters. Syst Biol 64:127-136
-
(2015)
Syst Biol
, vol.64
, pp. 127-136
-
-
Maddison, W.P.1
FitzJohn, R.G.2
-
20
-
-
84880406721
-
Exceptional convergence on the macroevolutionary landscape in island lizard radiations
-
Mahler DL, Ingram T, Revell LJ, Losos JB (2013) Exceptional convergence on the macroevolutionary landscape in island lizard radiations. Science 341:292-295
-
(2013)
Science
, vol.341
, pp. 292-295
-
-
Mahler, D.L.1
Ingram, T.2
Revell, L.J.3
Losos, J.B.4
-
22
-
-
84878935759
-
Evolution of mammalian diving capacity traced by myoglobin net surface charge
-
Mirceta S, Signore AV, Burns JM, Cossins AR, Campbell KL, Berenbrink M (2013) Evolution of mammalian diving capacity traced by myoglobin net surface charge. Science 340:1234192
-
(2013)
Science
, vol.340
, pp. 1234192
-
-
Mirceta, S.1
Signore, A.V.2
Burns, J.M.3
Cossins, A.R.4
Campbell, K.L.5
Berenbrink, M.6
-
23
-
-
84871329427
-
Convergent evolution within an adaptive radiation of cichlid fishes
-
Muschick M, Indermaur A, Salzburger W (2012) Convergent evolution within an adaptive radiation of cichlid fishes. Curr Biol 22:2362-2368
-
(2012)
Curr Biol
, vol.22
, pp. 2362-2368
-
-
Muschick, M.1
Indermaur, A.2
Salzburger, W.3
-
24
-
-
9744245452
-
Bayesian estimation of ancestral character states on phylogenies
-
Pagel M, Meade A, Barker D (2004) Bayesian estimation of ancestral character states on phylogenies. Syst Biol 53:673-684
-
(2004)
Syst Biol
, vol.53
, pp. 673-684
-
-
Pagel, M.1
Meade, A.2
Barker, D.3
-
25
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
26
-
-
84962475155
-
A robust semi-parametric test for detecting trait-dependent diversification
-
Rabosky DL, Huang H (2015) A robust semi-parametric test for detecting trait-dependent diversification. Syst Biol 2015:syv066
-
(2015)
Syst Biol
, vol.2015
, pp. syv066
-
-
Rabosky, D.L.1
Huang, H.2
-
27
-
-
84867364321
-
phytools: An R package for phylogenetic comparative biology (and other things)
-
Revell LJ (2012) phytools: an R package for phylogenetic comparative biology (and other things). Methods Ecol Evol 3:217-223
-
(2012)
Methods Ecol Evol
, vol.3
, pp. 217-223
-
-
Revell, L.J.1
-
30
-
-
84870542995
-
Integrating fossils with molecular phylogenies improves inference of trait evolution
-
Slater GJ, Harmon LJ, Alfaro ME (2012) Integrating fossils with molecular phylogenies improves inference of trait evolution. Evolution 66:3931-3944
-
(2012)
Evolution
, vol.66
, pp. 3931-3944
-
-
Slater, G.J.1
Harmon, L.J.2
Alfaro, M.E.3
-
31
-
-
84959466987
-
Quantification provides a conceptual basis for convergent evolution
-
Speed MP Arbuckle K (2016) Quantification provides a conceptual basis for convergent evolution. Biol Rev (Early View)
-
(2016)
Biol Rev (Early View)
-
-
Speed, M.P.1
Arbuckle, K.2
-
32
-
-
41949137690
-
Is convergence surprising? An examination of the frequency of convergence in simulated datasets
-
Stayton CT (2008) Is convergence surprising? An examination of the frequency of convergence in simulated datasets. J Theor Biol 252:1-14
-
(2008)
J Theor Biol
, vol.252
, pp. 1-14
-
-
Stayton, C.T.1
-
33
-
-
84940459077
-
The definition, recognition, and interpretation of convergent evolution, and two new measures for quantifying and assessing the significance of convergence
-
Stayton CT (2015) The definition, recognition, and interpretation of convergent evolution, and two new measures for quantifying and assessing the significance of convergence. Evolution 69:2140-2153
-
(2015)
Evolution
, vol.69
, pp. 2140-2153
-
-
Stayton, C.T.1
-
34
-
-
84942916149
-
Widespread convergence in toxin resistance by predictable molecular evolution
-
Ujvari B, Casewell NR, Sunagar K, Arbuckle K, Wüster W, Lo N, O’Meally D, Beckmann C, King GF, Deplazes E, Madsen T (2015) Widespread convergence in toxin resistance by predictable molecular evolution. Proc Natl Acad Sci USA 112:11911-11916
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, pp. 11911-11916
-
-
Ujvari, B.1
Casewell, N.R.2
Sunagar, K.3
Arbuckle, K.4
Wüster, W.5
Lo, N.6
O’Meally, D.7
Beckmann, C.8
King, G.F.9
Deplazes, E.10
Madsen, T.11
-
35
-
-
84951567169
-
Convergent evolution across the Australian continent: Ecotype diversification drives morphological convergence in two distantly related clades of Australian frogs
-
Vidal-García M, Keogh JS (2015) Convergent evolution across the Australian continent: ecotype diversification drives morphological convergence in two distantly related clades of Australian frogs. J Evol Biol 2015:2136-2151
-
(2015)
J Evol Biol
, vol.2015
, pp. 2136-2151
-
-
Vidal-García, M.1
Keogh, J.S.2
-
36
-
-
21744454465
-
Local phylogenetic divergence and global evolutionary convergence of skull function in reef fishes of the family Labridae
-
Westneat MW, Alfaro ME, Wainwright PC, Bellwood DR, Grubich JR, Fessler JL, Clements KD, Smith LL (2005) Local phylogenetic divergence and global evolutionary convergence of skull function in reef fishes of the family Labridae. Proc R Soc B 272:993-1000
-
(2005)
Proc R Soc B
, vol.272
, pp. 993-1000
-
-
Westneat, M.W.1
Alfaro, M.E.2
Wainwright, P.C.3
Bellwood, D.R.4
Grubich, J.R.5
Fessler, J.L.6
Clements, K.D.7
Smith, L.L.8
-
37
-
-
0026301358
-
Ecomorphological diversification in lowland freshwater fish assemblages from five biotic regions
-
Winemiller KO (1991) Ecomorphological diversification in lowland freshwater fish assemblages from five biotic regions. Ecol Monogr 61:343-365
-
(1991)
Ecol Monogr
, vol.61
, pp. 343-365
-
-
Winemiller, K.O.1
-
38
-
-
84964253057
-
RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography
-
Yu Y, Harris AJ, Blair C, He X (2015) RASP (Reconstruct Ancestral State in Phylogenies): a tool for historical biogeography. Mol Phylogenet Evol 87:46-49
-
(2015)
Mol Phylogenet Evol
, vol.87
, pp. 46-49
-
-
Yu, Y.1
Harris, A.J.2
Blair, C.3
He, X.4
|