메뉴 건너뛰기




Volumn 45, Issue D1, 2017, Pages D888-D895

DiseaseMeth version 2.0: A major expansion and update of the human disease methylation database

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOMATION; CARCINOMA; CASE CONTROL STUDY; COMPUTER INTERFACE; DATA MINING; DISEASEMETH VERSION 2.0 DATABASE; DNA METHYLATION; EPIGENETICS; GENETIC ASSOCIATION; GENETIC DATABASE; GENETIC DISORDER; GENETIC SCREENING; HIGH THROUGHPUT SCREENING; HUMAN; INTERNET; MATHEMATICAL COMPUTING; MOLECULAR DIAGNOSIS; MOLECULAR GENETICS; MOLECULAR PATHOLOGY; ONLINE SYSTEM; SURVIVAL; WEB BROWSER; BIOLOGY; GENE EXPRESSION PROFILING; GENETIC ASSOCIATION STUDY; PROCEDURES; SEARCH ENGINE; SOFTWARE;

EID: 85016140568     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw1123     Document Type: Article
Times cited : (127)

References (43)
  • 1
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifcations and their function
    • Kouzarides, T. (2007) Chromatin modifcations and their function. Cell, 128, 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 3
    • 84934922563 scopus 로고    scopus 로고
    • The Cancer Genome Atlas (TCGA): An immeasurable source of knowledge
    • Tomczak, K., Czerwinska, P. and Wiznerowicz, M. (2015) The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge. Contemp. Oncol. (Pozn), 19, A68-A77.
    • (2015) Contemp. Oncol. (Pozn) , vol.19 , pp. A68-A77
    • Tomczak, K.1    Czerwinska, P.2    Wiznerowicz, M.3
  • 4
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defnes human glioblastoma genes and core pathways
    • Cancer Genome Atlas Research, N. (2008) Comprehensive genomic characterization defnes human glioblastoma genes and core pathways. Nature, 455, 1061-1068.
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 10
    • 84896707487 scopus 로고    scopus 로고
    • DNA methyltransferase inhibition reverses epigenetically embedded phenotypes in lung cancer preferentially affecting polycomb target genes
    • Hascher, A., Haase, A.K., Hebestreit, K., Rohde, C., Klein, H.U., Rius, M., Jungen, D., Witten, A., Stoll, M., Schulze, I. et al. (2014) DNA methyltransferase inhibition reverses epigenetically embedded phenotypes in lung cancer preferentially affecting polycomb target genes. Clin. Cancer Res., 20, 814-826.
    • (2014) Clin. Cancer Res. , vol.20 , pp. 814-826
    • Hascher, A.1    Haase, A.K.2    Hebestreit, K.3    Rohde, C.4    Klein, H.U.5    Rius, M.6    Jungen, D.7    Witten, A.8    Stoll, M.9    Schulze, I.10
  • 12
    • 84893813110 scopus 로고    scopus 로고
    • Defciency in expression and epigenetic DNA Methylation of ASS1 gene in nasopharyngeal carcinoma: Negative prognostic impact and therapeutic relevance
    • Lan, J., Tai, H.C., Lee, S.W., Chen, T.J., Huang, H.Y. and Li, C.F. (2014) Defciency in expression and epigenetic DNA Methylation of ASS1 gene in nasopharyngeal carcinoma: negative prognostic impact and therapeutic relevance. Tumour Biol., 35, 161-169.
    • (2014) Tumour Biol. , vol.35 , pp. 161-169
    • Lan, J.1    Tai, H.C.2    Lee, S.W.3    Chen, T.J.4    Huang, H.Y.5    Li, C.F.6
  • 13
    • 84940523904 scopus 로고    scopus 로고
    • Assessment of global DNA methylation in peripheral blood cell subpopulations of early rheumatoid arthritis before and after methotrexate
    • de Andres, M.C., Perez-Pampin, E., Calaza, M., Santaclara, F.J., Ortea, I., Gomez-Reino, J.J. and Gonzalez, A. (2015) Assessment of global DNA methylation in peripheral blood cell subpopulations of early rheumatoid arthritis before and after methotrexate. Arthritis Res. Ther., 17, 233-242.
    • (2015) Arthritis Res. Ther. , vol.17 , pp. 233-242
    • De Andres, M.C.1    Perez-Pampin, E.2    Calaza, M.3    Santaclara, F.J.4    Ortea, I.5    Gomez-Reino, J.J.6    Gonzalez, A.7
  • 14
    • 85020106984 scopus 로고    scopus 로고
    • Plasma DNA methylation: A potential biomarker for stratifcation of liver fbrosis in non-alcoholic fatty liver disease
    • Hardy, T., Zeybel, M., Day, C.P., Dipper, C., Masson, S., McPherson, S., Henderson, E., Tiniakos, D., White, S., French, J. et al. (2016) Plasma DNA methylation: a potential biomarker for stratifcation of liver fbrosis in non-alcoholic fatty liver disease. Gut., 112, E5503-E5512.
    • (2016) Gut. , vol.112 , pp. E5503-E5512
    • Hardy, T.1    Zeybel, M.2    Day, C.P.3    Dipper, C.4    Masson, S.5    McPherson, S.6    Henderson, E.7    Tiniakos, D.8    White, S.9    French, J.10
  • 15
    • 1142275110 scopus 로고    scopus 로고
    • Aberrant CpG island hypermethylation of multiple genes in prostate cancer and prostatic intraepithelial neoplasia
    • Kang, G.H., Lee, S., Lee, H.J. and Hwang, K.S. (2004) Aberrant CpG island hypermethylation of multiple genes in prostate cancer and prostatic intraepithelial neoplasia. J. Pathol., 202, 233-240.
    • (2004) J. Pathol. , vol.202 , pp. 233-240
    • Kang, G.H.1    Lee, S.2    Lee, H.J.3    Hwang, K.S.4
  • 19
    • 84891764656 scopus 로고    scopus 로고
    • NGSmethDB: An updated genome resource for high quality, single-cytosine resolution methylomes
    • Geisen, S., Barturen, G., Alganza, A.M., Hackenberg, M. and Oliver, J.L. (2014) NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes. Nucleic Acids Res., 42, D53-D59.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D53-D59
    • Geisen, S.1    Barturen, G.2    Alganza, A.M.3    Hackenberg, M.4    Oliver, J.L.5
  • 20
    • 84891904054 scopus 로고    scopus 로고
    • A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics
    • Song, Q., Decato, B., Hong, E.E., Zhou, M., Fang, F., Qu, J., Garvin, T., Kessler, M., Zhou, J. and Smith, A.D. (2013) A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics. PLoS One, 8, e81148.
    • (2013) PLoS One , vol.8 , pp. e81148
    • Song, Q.1    Decato, B.2    Hong, E.E.3    Zhou, M.4    Fang, F.5    Qu, J.6    Garvin, T.7    Kessler, M.8    Zhou, J.9    Smith, A.D.10
  • 22
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
    • Du, P., Zhang, X., Huang, C.C., Jafari, N., Kibbe, W.A., Hou, L. and Lin, S.M. (2010) Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics, 11, 587-596.
    • (2010) BMC Bioinformatics , vol.11 , pp. 587-596
    • Du, P.1    Zhang, X.2    Huang, C.C.3    Jafari, N.4    Kibbe, W.A.5    Hou, L.6    Lin, S.M.7
  • 24
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A fexible aligner and methylation caller for Bisulfte-Seq applications
    • Krueger, F. and Andrews, S.R. (2011) Bismark: a fexible aligner and methylation caller for Bisulfte-Seq applications. Bioinformatics, 27, 1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 25
    • 78149236787 scopus 로고    scopus 로고
    • DisGeNET: A Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks
    • Bauer-Mehren, A., Rautschka, M., Sanz, F. and Furlong, L.I. (2010) DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks. Bioinformatics, 26, 2924-2926.
    • (2010) Bioinformatics , vol.26 , pp. 2924-2926
    • Bauer-Mehren, A.1    Rautschka, M.2    Sanz, F.3    Furlong, L.I.4
  • 26
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D., McCarthy, D.J. and Smyth, G.K. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 28
    • 0035942271 scopus 로고    scopus 로고
    • Signifcance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V.G., Tibshirani, R. and Chu, G. (2001) Signifcance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U.S.A., 98, 5116-5121.
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 29
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang da, W., Sherman, B.T. and Lempicki, R.A. (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res., 37, 1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 31
    • 84896339304 scopus 로고    scopus 로고
    • PROGgene: Gene expression based survival analysis web application for multiple cancers
    • Goswami, C.P. and Nakshatri, H. (2013) PROGgene: gene expression based survival analysis web application for multiple cancers. J. Clin. Bioinform., 3, 22-31.
    • (2013) J. Clin. Bioinform. , vol.3 , pp. 22-31
    • Goswami, C.P.1    Nakshatri, H.2
  • 32
    • 79956006215 scopus 로고    scopus 로고
    • QDMR: A quantitative method for identifcation of differentially methylated regions by entropy
    • Zhang, Y., Liu, H., Lv, J., Xiao, X., Zhu, J., Liu, X., Su, J., Li, X., Wu, Q., Wang, F. et al. (2011) QDMR: a quantitative method for identifcation of differentially methylated regions by entropy. Nucleic Acids Res., 39, e58.
    • (2011) Nucleic Acids Res. , vol.39 , pp. e58
    • Zhang, Y.1    Liu, H.2    Lv, J.3    Xiao, X.4    Zhu, J.5    Liu, X.6    Su, J.7    Li, X.8    Wu, Q.9    Wang, F.10
  • 34
    • 84959858627 scopus 로고    scopus 로고
    • DDMGD: The database of text-mined associations between genes methylated in diseases from different species
    • Bin Raies, A., Mansour, H., Incitti, R. and Bajic, V.B. (2015) DDMGD: the database of text-mined associations between genes methylated in diseases from different species. Nucleic Acids Res., 43, D879-D886.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D879-D886
    • Bin Raies, A.1    Mansour, H.2    Incitti, R.3    Bajic, V.B.4
  • 35
    • 83355161466 scopus 로고    scopus 로고
    • MeInfoText 2.0: Gene methylation and cancer relation extraction from biomedical literature
    • Fang, Y.-C., Lai, P.-T., Dai, H.-J. and Hsu, W.-L. (2011) MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinformatics, 12, 471-479.
    • (2011) BMC Bioinformatics , vol.12 , pp. 471-479
    • Fang, Y.-C.1    Lai, P.-T.2    Dai, H.-J.3    Hsu, W.-L.4
  • 36
    • 0037252736 scopus 로고    scopus 로고
    • An improved version of the DNA Methylation database (MethDB)
    • Amoreira, C., Hindermann, W. and Grunau, C. (2003) An improved version of the DNA Methylation database (MethDB). Nucleic Acids Res., 31, 75-77.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 75-77
    • Amoreira, C.1    Hindermann, W.2    Grunau, C.3
  • 37
    • 84875376002 scopus 로고    scopus 로고
    • MENT: Methylation and expression database of normal and tumor tissues
    • Baek, S.J., Yang, S., Kang, T.W., Park, S.M., Kim, Y.S. and Kim, S.Y. (2013) MENT: methylation and expression database of normal and tumor tissues. Gene, 518, 194-200.
    • (2013) Gene , vol.518 , pp. 194-200
    • Baek, S.J.1    Yang, S.2    Kang, T.W.3    Park, S.M.4    Kim, Y.S.5    Kim, S.Y.6
  • 38
    • 84876428703 scopus 로고    scopus 로고
    • CMS: A web-based system for visualization and analysis of genome-wide methylation data of human cancers
    • Gu, F., Doderer, M.S., Huang, Y.W., Roa, J.C., Goodfellow, P.J., Kizer, E.L., Huang, T.H. and Chen, Y. (2013) CMS: a web-based system for visualization and analysis of genome-wide methylation data of human cancers. PLoS One, 8, e60980.
    • (2013) PLoS One , vol.8 , pp. e60980
    • Gu, F.1    Doderer, M.S.2    Huang, Y.W.3    Roa, J.C.4    Goodfellow, P.J.5    Kizer, E.L.6    Huang, T.H.7    Chen, Y.8
  • 40
    • 84989843418 scopus 로고    scopus 로고
    • PD NGSAtlas: A reference database combining next-generation sequencing epigenomic and transcriptomic data for psychiatric disorders
    • Zhao, Z., Li, Y., Chen, H., Lu, J., Thompson, P.M., Chen, J., Wang, Z., Xu, J., Xu, C. and Li, X. (2014) PD NGSAtlas: a reference database combining next-generation sequencing epigenomic and transcriptomic data for psychiatric disorders. BMC Med. Genomics, 7, 71-82.
    • (2014) BMC Med. Genomics , vol.7 , pp. 71-82
    • Zhao, Z.1    Li, Y.2    Chen, H.3    Lu, J.4    Thompson, P.M.5    Chen, J.6    Wang, Z.7    Xu, J.8    Xu, C.9    Li, X.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.