-
1
-
-
77953089698
-
FSVM-CIL: fuzzy support vector machines for class imbalance learning
-
Batuwita, R., Palade, V., FSVM-CIL: fuzzy support vector machines for class imbalance learning. IEEE Trans. Fuzzy Syst. 18 (2010), 558–571.
-
(2010)
IEEE Trans. Fuzzy Syst.
, vol.18
, pp. 558-571
-
-
Batuwita, R.1
Palade, V.2
-
3
-
-
84875576158
-
Propy: a tool to generate various modes of Chou׳s PseAAC
-
Cao, D.S., Xu, Q.S., Liang, Y.Z., Propy: a tool to generate various modes of Chou׳s PseAAC. Bioinformatics 29 (2013), 960–962.
-
(2013)
Bioinformatics
, vol.29
, pp. 960-962
-
-
Cao, D.S.1
Xu, Q.S.2
Liang, Y.Z.3
-
4
-
-
79955702502
-
Libsvm: a library for support vector machines
-
Chang, C.C., Lin, C.J., Libsvm: a library for support vector machines. ACM Trans. Intell. Syst. Technol., 2, 2011, 27.
-
(2011)
ACM Trans. Intell. Syst. Technol.
, vol.2
, pp. 27
-
-
Chang, C.C.1
Lin, C.J.2
-
5
-
-
84921500317
-
iTIS-PseTNC: a sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition
-
Chen, W., Feng, P.M., Deng, E.Z., iTIS-PseTNC: a sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition. Anal. Biochem. 462 (2014), 76–83.
-
(2014)
Anal. Biochem.
, vol.462
, pp. 76-83
-
-
Chen, W.1
Feng, P.M.2
Deng, E.Z.3
-
6
-
-
84876053736
-
iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
-
Chen, W., Feng, P.M., Lin, H., iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition. Nucleic Acids Res., 41, 2013, e68.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e68
-
-
Chen, W.1
Feng, P.M.2
Lin, H.3
-
7
-
-
84941783146
-
Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences
-
Chen, W., Lin, H., Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences. Mol. Biosyst. 11 (2015), 2620–2634.
-
(2015)
Mol. Biosyst.
, vol.11
, pp. 2620-2634
-
-
Chen, W.1
Lin, H.2
-
8
-
-
34047138318
-
Combining svms with various feature selection strategies
-
I. Guyon N. Nikravesh S. Gunn L. Zadeh Springer
-
Chen, Y.W., Lin, C.J., Combining svms with various feature selection strategies. Guyon, I., Nikravesh, N., Gunn, S., Zadeh, L., (eds.) Feature Extraction, 2006, 2006, Springer, 315–324.
-
(2006)
Feature Extraction
, vol.2006
, pp. 315-324
-
-
Chen, Y.W.1
Lin, C.J.2
-
9
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo amino acid composition
-
Chou, K.C., Prediction of protein cellular attributes using pseudo amino acid composition. Proteins: Struct. Funct. Genet. 43 (2001), 246–255.
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
10
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition
-
Chou, K.C., Some remarks on protein attribute prediction and pseudo amino acid composition. J. Theor. Biol. 273 (2011), 236–247.
-
(2011)
J. Theor. Biol.
, vol.273
, pp. 236-247
-
-
Chou, K.C.1
-
11
-
-
84877758233
-
Some remarks on predicting multi-label attributes in molecular biosystems
-
Chou, K.C., Some remarks on predicting multi-label attributes in molecular biosystems. Mol. Biosyst. 9 (2013), 1092–1100.
-
(2013)
Mol. Biosyst.
, vol.9
, pp. 1092-1100
-
-
Chou, K.C.1
-
12
-
-
84926619444
-
Impacts of bioinformatics to medicinal chemistry
-
Chou, K.C., Impacts of bioinformatics to medicinal chemistry. Med. Chem. 11 (2015), 218–234.
-
(2015)
Med. Chem.
, vol.11
, pp. 218-234
-
-
Chou, K.C.1
-
13
-
-
77649339280
-
Review: recent advances in developing web-servers for predicting protein attributes
-
Chou, K.C., Shen, H.B., Review: recent advances in developing web-servers for predicting protein attributes. Nat. Sci. 1 (2009), 63–92.
-
(2009)
Nat. Sci.
, vol.1
, pp. 63-92
-
-
Chou, K.C.1
Shen, H.B.2
-
14
-
-
2142738304
-
Weblogo: a sequence logo generator
-
Crooks, G.E., Hon, G., Chandonia, J.M., Brenner, S.E., Weblogo: a sequence logo generator. Genome Res. 14 (2004), 1188–1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
15
-
-
34548697717
-
Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network
-
Ding, Y.S., Zhang, T.L., Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network. Protein Pept. Lett. 14 (2007), 811–815.
-
(2007)
Protein Pept. Lett.
, vol.14
, pp. 811-815
-
-
Ding, Y.S.1
Zhang, T.L.2
-
16
-
-
84895429516
-
PseAAC-General: fast building various modes of general form of Chou׳s pseudo-amino acid composition for large-scale protein datasets
-
Du, P., Gu, S., Jiao, Y., PseAAC-General: fast building various modes of general form of Chou׳s pseudo-amino acid composition for large-scale protein datasets. Int. J. Mol. Sci. 15 (2014), 3495–3506.
-
(2014)
Int. J. Mol. Sci.
, vol.15
, pp. 3495-3506
-
-
Du, P.1
Gu, S.2
Jiao, Y.3
-
17
-
-
84859932176
-
PseAAC-Builder: a cross-platform stand-alone program for generating various special Chou׳s pseudo-amino acid compositions
-
Du, P., Wang, X., Xu, C., Gao, Y., PseAAC-Builder: a cross-platform stand-alone program for generating various special Chou׳s pseudo-amino acid compositions. Anal. Biochem. 425 (2012), 117–119.
-
(2012)
Anal. Biochem.
, vol.425
, pp. 117-119
-
-
Du, P.1
Wang, X.2
Xu, C.3
Gao, Y.4
-
18
-
-
84928722799
-
iPPI-Esml: an ensemble classifier for identifying the interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC
-
Jia, J., Liu, Z., Xiao, X., iPPI-Esml: an ensemble classifier for identifying the interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC. J. Theor. Biol. 377 (2015), 47–56.
-
(2015)
J. Theor. Biol.
, vol.377
, pp. 47-56
-
-
Jia, J.1
Liu, Z.2
Xiao, X.3
-
19
-
-
84941884355
-
iLM-2L: a two-level predictor for identifying protein lysine methylation sites and their methylation degrees by incorporating K-gap amino acid pairs into Chou׳s general PseAAC
-
Ju, Z., Cao, J.Z., Gu, H., iLM-2L: a two-level predictor for identifying protein lysine methylation sites and their methylation degrees by incorporating K-gap amino acid pairs into Chou׳s general PseAAC. J. Theor. Biol. 385 (2015), 50–57.
-
(2015)
J. Theor. Biol.
, vol.385
, pp. 50-57
-
-
Ju, Z.1
Cao, J.Z.2
Gu, H.3
-
20
-
-
84899509208
-
The functional diversity of protein lysine methylation
-
Lanouette, S., Mongeon, V., Figeys, D., The functional diversity of protein lysine methylation. Mol. Syst. Biol., 10, 2014, 724.
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 724
-
-
Lanouette, S.1
Mongeon, V.2
Figeys, D.3
-
22
-
-
84941040066
-
iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition
-
Lin, H., Deng, E.Z., Ding, H., iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition. Nucleic Acids Res. 42 (2014), 12961–12972.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 12961-12972
-
-
Lin, H.1
Deng, E.Z.2
Ding, H.3
-
23
-
-
84883658706
-
Theoretical and experimental biology in one—a symposium in honour of Professor Kuo-Chen Chou׳s 50th anniversary and Professor Richard Giegé׳s 40th anniversary of their scientific careers
-
Lin, S.X., Lapointe, J., Theoretical and experimental biology in one—a symposium in honour of Professor Kuo-Chen Chou׳s 50th anniversary and Professor Richard Giegé׳s 40th anniversary of their scientific careers. Biomed. Sci. Eng. 6 (2013), 435–442.
-
(2013)
Biomed. Sci. Eng.
, vol.6
, pp. 435-442
-
-
Lin, S.X.1
Lapointe, J.2
-
24
-
-
84926631457
-
Identification of real microRNA precursors with a pseudo structure status composition approach
-
Liu, B., Fang, L., Liu, F., Wang, X., Identification of real microRNA precursors with a pseudo structure status composition approach. PLoS One, 10, 2015, e0121501.
-
(2015)
PLoS One
, vol.10
, pp. e0121501
-
-
Liu, B.1
Fang, L.2
Liu, F.3
Wang, X.4
-
25
-
-
84979865452
-
Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences
-
Liu, B., Liu, F., Wang, X., Chen, J., Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences. Nucleic Acids Res. 43 (2015), W65–W71.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. W65-W71
-
-
Liu, B.1
Liu, F.2
Wang, X.3
Chen, J.4
-
26
-
-
84891779165
-
CPLM: a database of protein lysine modifications
-
Liu, Z.X., Wang, Y.B., Gao, T.S., Pan, Z.C., Chen, H., Yang, Q., Cheng, Z.Y., Guo, A.Y., Ren, J., Xue, Y., CPLM: a database of protein lysine modifications. Nucleic acids Res. 42 (2014), D531–D536.
-
(2014)
Nucleic acids Res.
, vol.42
, pp. D531-D536
-
-
Liu, Z.X.1
Wang, Y.B.2
Gao, T.S.3
Pan, Z.C.4
Chen, H.5
Yang, Q.6
Cheng, Z.Y.7
Guo, A.Y.8
Ren, J.9
Xue, Y.10
-
27
-
-
84881077601
-
Functional lysine modification by an intrinsically reactive primary glycolytic metabolite
-
Moellering, R.E., Cravatt, B.F., Functional lysine modification by an intrinsically reactive primary glycolytic metabolite. Science 341 (2013), 549–553.
-
(2013)
Science
, vol.341
, pp. 549-553
-
-
Moellering, R.E.1
Cravatt, B.F.2
-
28
-
-
84930570742
-
iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a grey system model
-
Qiu, W.R., Xiao, X., Lin, W.Z., iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a grey system model. J. Biomol. Struct. Dyn. 33 (2015), 1731–1742.
-
(2015)
J. Biomol. Struct. Dyn.
, vol.33
, pp. 1731-1742
-
-
Qiu, W.R.1
Xiao, X.2
Lin, W.Z.3
-
29
-
-
84902162941
-
iMethyl-PseAAC: identification of protein methylation sites via a pseudo amino acid composition approach
-
Qiu, W.R., Xiao, X., Lin, W.Z., Chou, K.C., iMethyl-PseAAC: identification of protein methylation sites via a pseudo amino acid composition approach. Biomed. Res. Int., 2014.
-
(2014)
Biomed. Res. Int.
-
-
Qiu, W.R.1
Xiao, X.2
Lin, W.Z.3
Chou, K.C.4
-
30
-
-
85045542344
-
-
Controlling the sensitivity of support vector machines. In: Proceedings of the International Joint Conference on AI 55-60.
-
Veropoulos, K., Campbell, C., Cristianini, N., 1999. Controlling the sensitivity of support vector machines. In: Proceedings of the International Joint Conference on AI 55-60.
-
(1999)
-
-
Veropoulos, K.1
Campbell, C.2
Cristianini, N.3
-
31
-
-
80051676719
-
NR−2L: a two-level predictor for identifying nuclear receptor subfamilies based on sequence-derived features
-
Wang, P., Xiao, X., NR−2L: a two-level predictor for identifying nuclear receptor subfamilies based on sequence-derived features. PLoS One, 6, 2011, e23505.
-
(2011)
PLoS One
, vol.6
, pp. e23505
-
-
Wang, P.1
Xiao, X.2
-
32
-
-
79953316878
-
iLoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins
-
Wu, Z.C., Xiao, X., iLoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins. PLoS One, 6, 2011, e18258.
-
(2011)
PLoS One
, vol.6
, pp. e18258
-
-
Wu, Z.C.1
Xiao, X.2
-
33
-
-
84855641685
-
iLoc-Hum: using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites
-
Wu, Z.C., Xiao, X., iLoc-Hum: using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites. Mol. Biosyst. 8 (2012), 629–641.
-
(2012)
Mol. Biosyst.
, vol.8
, pp. 629-641
-
-
Wu, Z.C.1
Xiao, X.2
-
34
-
-
84883143619
-
iGPCR-Drug: a web server for predicting interaction between GPCRs and drugs in cellular networking
-
Xiao, X., Min, J.L., Wang, P., iGPCR-Drug: a web server for predicting interaction between GPCRs and drugs in cellular networking. Plos. ONE, 8, 2013, e72234.
-
(2013)
Plos. ONE
, vol.8
, pp. e72234
-
-
Xiao, X.1
Min, J.L.2
Wang, P.3
-
35
-
-
84883661549
-
iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
-
Xiao, X., Min, J.L., Wang, P., iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints. J. Theor. Biol. 337C (2013), 71–79.
-
(2013)
J. Theor. Biol.
, vol.337C
, pp. 71-79
-
-
Xiao, X.1
Min, J.L.2
Wang, P.3
-
36
-
-
79951606205
-
GPCR−2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions
-
Xiao, X., Wang, P., GPCR−2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions. Mol. Biosyst. 7 (2011), 911–919.
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 911-919
-
-
Xiao, X.1
Wang, P.2
-
37
-
-
84875074764
-
iAMP−2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types
-
Xiao, X., Wang, P., Lin, W.Z., Jia, J.H., Chou, K.C., iAMP−2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types. Anal. Biochem. 436 (2013), 168–177.
-
(2013)
Anal. Biochem.
, vol.436
, pp. 168-177
-
-
Xiao, X.1
Wang, P.2
Lin, W.Z.3
Jia, J.H.4
Chou, K.C.5
-
38
-
-
84962586763
-
Recent progress in predicting posttranslational modification sites in proteins
-
Xu, Y., Chou, K.C., Recent progress in predicting posttranslational modification sites in proteins. Curr. Top. Med. Chem. 16 (2016), 591–603.
-
(2016)
Curr. Top. Med. Chem.
, vol.16
, pp. 591-603
-
-
Xu, Y.1
Chou, K.C.2
-
39
-
-
84873575437
-
iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition
-
Xu, Y., Ding, J., Wu, L.Y., iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition. PLoS One, 8, 2013, e55844.
-
(2013)
PLoS One
, vol.8
, pp. e55844
-
-
Xu, Y.1
Ding, J.2
Wu, L.Y.3
-
40
-
-
84929306643
-
Phogly–PseAAC: prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity
-
Xu, Y., Ding, Y.X., Ding, J., Deng, N.Y., Phogly–PseAAC: prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity. J. Theor. Biol. 379 (2015), 10–15.
-
(2015)
J. Theor. Biol.
, vol.379
, pp. 10-15
-
-
Xu, Y.1
Ding, Y.X.2
Ding, J.3
Deng, N.Y.4
-
41
-
-
84935032064
-
iSuc-PseAAC: predicting lysine succinylation in proteins by incorporating peptide position-specific propensity
-
Xu, Y., Ding, Y.X., Ding, J., Lei, Y.H., Wu, L.Y., Deng, N.Y., iSuc-PseAAC: predicting lysine succinylation in proteins by incorporating peptide position-specific propensity. Sci. Rep., 5, 2015.
-
(2015)
Sci. Rep.
, vol.5
-
-
Xu, Y.1
Ding, Y.X.2
Ding, J.3
Lei, Y.H.4
Wu, L.Y.5
Deng, N.Y.6
-
42
-
-
84885156363
-
iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins
-
Xu, Y., Shao, X.J., Wu, L.Y., iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins. PeerJ, 1, 2013, e171.
-
(2013)
PeerJ
, vol.1
, pp. e171
-
-
Xu, Y.1
Shao, X.J.2
Wu, L.Y.3
-
43
-
-
84895903694
-
Prediction of posttranslational modification sites from amino acid sequences with kernel methods
-
Xu, Y., Wang, X., Wang, Y., Tian, Y., Shao, X., Wu, L.Y., Deng, N.Y., Prediction of posttranslational modification sites from amino acid sequences with kernel methods. J. Theor. Biol. 344 (2014), 78–87.
-
(2014)
J. Theor. Biol.
, vol.344
, pp. 78-87
-
-
Xu, Y.1
Wang, X.2
Wang, Y.3
Tian, Y.4
Shao, X.5
Wu, L.Y.6
Deng, N.Y.7
-
44
-
-
84899856397
-
iHyd-PseAAC: predicting hydroxyproline and hydroxylysine in proteins by incorporating dipeptide position-specific propensity into pseudo amino acid composition
-
Xu, Y., Wen, X., Shao, X.J., iHyd-PseAAC: predicting hydroxyproline and hydroxylysine in proteins by incorporating dipeptide position-specific propensity into pseudo amino acid composition. Int. J. Mol. Sci. 15 (2014), 7594–7610.
-
(2014)
Int. J. Mol. Sci.
, vol.15
, pp. 7594-7610
-
-
Xu, Y.1
Wen, X.2
Shao, X.J.3
-
45
-
-
84905982402
-
iNitro-Tyr: prediction of nitrotyrosine sites in proteins with general pseudo amino acid composition
-
Xu, Y., Wen, X., Wen, L.S., Wu, L.Y., iNitro-Tyr: prediction of nitrotyrosine sites in proteins with general pseudo amino acid composition. PLoS One, 9, 2014, e105018.
-
(2014)
PLoS One
, vol.9
, pp. e105018
-
-
Xu, Y.1
Wen, X.2
Wen, L.S.3
Wu, L.Y.4
-
46
-
-
36348994911
-
Prediction protein structural classes with pseudo amino acid composition: approximate entropy and hydrophobicity pattern
-
Zhang, T.L., Ding, Y.S., Prediction protein structural classes with pseudo amino acid composition: approximate entropy and hydrophobicity pattern. J. Theor. Biol. 250 (2008), 186–193.
-
(2008)
J. Theor. Biol.
, vol.250
, pp. 186-193
-
-
Zhang, T.L.1
Ding, Y.S.2
|