메뉴 건너뛰기




Volumn 44, Issue W1, 2016, Pages W176-W180

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

COMPETING ENDOGENOUS RNA; LONG UNTRANSLATED RNA; MICRORNA; MESSENGER RNA;

EID: 85015822675     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/NAR/GKW443     Document Type: Article
Times cited : (95)

References (14)
  • 1
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis,B.P., Burge,C.B. and Bartel,D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 2
    • 84940502214 scopus 로고    scopus 로고
    • Predicting effective microRNA target sites in mammalian mRNAs
    • Agarwal,V., Bell,G.W., Nam,J.W. and Bartel,D.P. (2015) Predicting effective microRNA target sites in mammalian mRNAs. eLife, 4, doi:10.7554/eLife.05005.
    • (2015) eLife , vol.4
    • Agarwal, V.1    Bell, G.W.2    Nam, J.W.3    Bartel, D.P.4
  • 7
    • 84891818924 scopus 로고    scopus 로고
    • starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
    • Li,J.H., Liu,S., Zhou,H., Qu,L.H. and Yang,J.H. (2014) starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res., 42, D92-D97.
    • (2014) Nucleic Acids Res , vol.42 , pp. D92-D97
    • Li, J.H.1    Liu, S.2    Zhou, H.3    Qu, L.H.4    Yang, J.H.5
  • 9
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: annotating high confidence microRNAs using deep sequencing data
    • Kozomara,A. and Griffiths-Jones,S. (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res., 42, D68-D73.
    • (2014) Nucleic Acids Res , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 11
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium
    • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • Nature , vol.489 , pp. 57-74
  • 13
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim,D., Pertea,G., Trapnell,C., Pimentel,H., Kelley,R. and Salzberg,S.L. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol., 14, R36.
    • (2013) Genome Biol , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 14
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq-a Python framework to work with high-throughput sequencing data
    • Anders,S., Pyl,P.T. and Huber,W. (2015) HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics, 31, 166-169.
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.