-
1
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis,B.P., Burge,C.B. and Bartel,D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
2
-
-
84940502214
-
Predicting effective microRNA target sites in mammalian mRNAs
-
Agarwal,V., Bell,G.W., Nam,J.W. and Bartel,D.P. (2015) Predicting effective microRNA target sites in mammalian mRNAs. eLife, 4, doi:10.7554/eLife.05005.
-
(2015)
eLife
, vol.4
-
-
Agarwal, V.1
Bell, G.W.2
Nam, J.W.3
Bartel, D.P.4
-
3
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright,A.J., John,B., Gaul,U., Tuschl,T., Sander,C. and Marks,D.S. (2003) MicroRNA targets in Drosophila. Genome Biol., 5, R1.
-
(2003)
Genome Biol
, vol.5
, pp. R1
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
4
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek,A., Grun,D., Poy,M.N., Wolf,R., Rosenberg,L., Epstein,E.J., MacMenamin,P., da Piedade,I., Gunsalus,K.C., Stoffel,M. et al. (2005) Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500.
-
(2005)
Nat. Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
-
5
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak,S., Jens,M., Elefsinioti,A., Torti,F., Krueger,J., Rybak,A., Maier,L., Mackowiak,S.D., Gregersen,L.H., Munschauer,M. et al. (2013) Circular RNAs are a large class of animal RNAs with regulatory potency. Nature, 495, 333-338.
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
Jens, M.2
Elefsinioti, A.3
Torti, F.4
Krueger, J.5
Rybak, A.6
Maier, L.7
Mackowiak, S.D.8
Gregersen, L.H.9
Munschauer, M.10
-
6
-
-
84976875164
-
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
-
Paraskevopoulou,M.D., Vlachos,I.S., Karagkouni,D., Georgakilas,G., Kanellos,I., Vergoulis,T., Zagganas,K., Tsanakas,P., Floros,E., Dalamagas,T. et al. (2016) DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res., 44, D231-D238.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D231-D238
-
-
Paraskevopoulou, M.D.1
Vlachos, I.S.2
Karagkouni, D.3
Georgakilas, G.4
Kanellos, I.5
Vergoulis, T.6
Zagganas, K.7
Tsanakas, P.8
Floros, E.9
Dalamagas, T.10
-
7
-
-
84891818924
-
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li,J.H., Liu,S., Zhou,H., Qu,L.H. and Yang,J.H. (2014) starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res., 42, D92-D97.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D92-D97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.H.5
-
8
-
-
84946037477
-
Ensembl 2015
-
Cunningham,F., Amode,M.R., Barrell,D., Beal,K., Billis,K., Brent,S., Carvalho-Silva,D., Clapham,P., Coates,G., Fitzgerald,S. et al. (2015) Ensembl 2015. Nucleic Acids Res., 43, D662-D669.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D662-D669
-
-
Cunningham, F.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fitzgerald, S.10
-
9
-
-
84891818318
-
miRBase: annotating high confidence microRNAs using deep sequencing data
-
Kozomara,A. and Griffiths-Jones,S. (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res., 42, D68-D73.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
10
-
-
84883592733
-
Genome Maps, a new generation genome browser
-
Medina,I., Salavert,F., Sanchez,R., de Maria,A., Alonso,R., Escobar,P., Bleda,M. and Dopazo,J. (2013) Genome Maps, a new generation genome browser. Nucleic Acids Res., 41, W41-W46.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W41-W46
-
-
Medina, I.1
Salavert, F.2
Sanchez, R.3
de Maria, A.4
Alonso, R.5
Escobar, P.6
Bleda, M.7
Dopazo, J.8
-
11
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
-
Nature
, vol.489
, pp. 57-74
-
-
-
12
-
-
84955439663
-
A survey of best practices for RNA-seq data analysis
-
Conesa,A., Madrigal,P., Tarazona,S., Gomez-Cabrero,D., Cervera,A., McPherson,A., Szczesniak,M.W., Gaffney,D.J., Elo,L.L., Zhang,X. et al. (2016). A survey of best practices for RNA-seq data analysis. Genome Biol., 17, 13.
-
(2016)
Genome Biol
, vol.17
, pp. 13
-
-
Conesa, A.1
Madrigal, P.2
Tarazona, S.3
Gomez-Cabrero, D.4
Cervera, A.5
McPherson, A.6
Szczesniak, M.W.7
Gaffney, D.J.8
Elo, L.L.9
Zhang, X.10
-
13
-
-
84876996918
-
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim,D., Pertea,G., Trapnell,C., Pimentel,H., Kelley,R. and Salzberg,S.L. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol., 14, R36.
-
(2013)
Genome Biol
, vol.14
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
14
-
-
84928987900
-
HTSeq-a Python framework to work with high-throughput sequencing data
-
Anders,S., Pyl,P.T. and Huber,W. (2015) HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics, 31, 166-169.
-
(2015)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
|