-
1
-
-
79952944296
-
Meta-work ows: Pattern-based interoperability between galaxy and taverna
-
New York, NY, USA ACM
-
M. Abouelhoda, S. Alaa, and M. Ghanem. Meta-work ows: Pattern-based Interoperability Between Galaxy and Taverna. In Proceedings of the 1st International Workshop on Work ow Approaches to New Data-centric Science, Wands '10, pages 2:1-2:8, New York, NY, USA, 2010. ACM.
-
(2010)
Proceedings of the 1st International Workshop on Work Ow Approaches to New Data-centric Science, Wands '10
, pp. 21-28
-
-
Abouelhoda, M.1
Alaa, S.2
Ghanem, M.3
-
2
-
-
84860503874
-
Tavaxy: Integrating taverna and galaxy work ows with cloud computing support
-
May
-
M. Abouelhoda, S. A. Issa, and M. Ghanem. Tavaxy: Integrating Taverna and Galaxy work ows with cloud computing support. BMC Bioinformatics, 13:77-77, May 2012.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 77
-
-
Abouelhoda, M.1
Issa, S.A.2
Ghanem, M.3
-
3
-
-
15944415121
-
Developing a protocol for bioinformatics analysis: An integrated information behavior and task analysis approach
-
J. C. Bartlett and E. G. Toms. Developing a protocol for bioinformatics analysis: An integrated information behavior and task analysis approach. Journal of the American Society for Information Science and Technology, 56(5):469-482, 2005.
-
(2005)
Journal of the American Society for Information Science and Technology
, vol.56
, Issue.5
, pp. 469-482
-
-
Bartlett, J.C.1
Toms, E.G.2
-
5
-
-
85015404852
-
-
BioDiscovery
-
BioDiscovery. Nexus copy number, 2013. http://www. biodiscovery.com/software/nexus-copy-number/.
-
(2013)
Nexus Copy Number
-
-
-
6
-
-
84860523363
-
Characterizing data discovery and end-user computing needs in clinical translational science
-
Oct
-
P. K. Chilana, E. Fishman, E. M. Geraghty, P. Tarczy-Hornoch, F. M. Wolf, and N. R. Anderson. Characterizing Data Discovery and End-User Computing Needs in Clinical Translational Science. J. Organ. End User Comput., 23(4):17-30, Oct. 2011.
-
(2011)
J. Organ. End User Comput
, vol.23
, Issue.4
, pp. 17-30
-
-
Chilana, P.K.1
Fishman, E.2
Geraghty, E.M.3
Tarczy-Hornoch, P.4
Wolf, F.M.5
Anderson, N.R.6
-
7
-
-
70349912088
-
Comparing bioinformatics software development by computer scientists and biologists: An exploratory study
-
Washington, DC, USA IEEE Computer Society
-
P. K. Chilana, C. L. Palmer, and A. J. Ko. Comparing Bioinformatics Software Development by Computer Scientists and Biologists: An Exploratory Study. In Proceedings of the 2009 ICSE Workshop on Software Engineering for Computational Science and Engineering, SECSE '09, pages 72-79, Washington, DC, USA, 2009. IEEE Computer Society.
-
(2009)
Proceedings of the 2009 ICSE Workshop on Software Engineering for Computational Science and Engineering, SECSE '09
, pp. 72-79
-
-
Chilana, P.K.1
Palmer, C.L.2
Ko, A.J.3
-
9
-
-
0032561249
-
New goals for the u.s. Human genome project: 1998-2003
-
t. m. o. t. DOE and N. p. groups
-
F. S. Collins, A. Patrinos, E. Jordan, A. Chakravarti, R. Gesteland, L. Walters, t. m. o. t. DOE, and N. p. groups. New goals for the u.s. human genome project: 1998-2003. Science, 282(5389):682-689, 1998.
-
(1998)
Science
, vol.282
, Issue.5389
, pp. 682-689
-
-
Collins, F.S.1
Patrinos, A.2
Jordan, E.3
Chakravarti, A.4
Gesteland, R.5
Walters, L.6
-
10
-
-
84861440160
-
How not to be a bioinformatician
-
M. Corpas, S. Fatumo, and R. Schneider. How Not to Be a Bioinformatician. Source Code for Biology and Medicine, 7(1):3, 2012.
-
(2012)
Source Code for Biology and Medicine
, vol.7
, Issue.1
, pp. 3
-
-
Corpas, M.1
Fatumo, S.2
Schneider, R.3
-
11
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible reproducible, and transparent computational research in the life sciences
-
J. Goecks, A. Nekrutenko, J. Taylor, and T. G. Team. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology, 11(8):R86, 2010.
-
(2010)
Genome Biology
, vol.11
, Issue.8
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
12
-
-
77953113171
-
Gridorbit public display: Providing grid awareness in a biology laboratory
-
New York, NY, USA ACM
-
J. D. Hincapi~ Al'-Ramos, A. Tabard, J. Bardram, and T. Sokoler. GridOrbit Public Display: Providing Grid Awareness in a Biology Laboratory. In CHI '10 Extended Abstracts on Human Factors in Computing Systems, CHI EA '10, pages 3265-3270, New York, NY, USA, 2010. ACM.
-
(2010)
CHI '10 Extended Abstracts on Human Factors in Computing Systems, CHI EA '10
, pp. 3265-3270
-
-
Hincapi Al-Ramos, J.D.1
Tabard, A.2
Bardram, J.3
Sokoler, T.4
-
13
-
-
33747833111
-
Taverna: A tool for building and running work ows of services
-
D. Hull, K. Wolstencroft, R. Stevens, C. Goble, M. R. Pocock, P. Li, and T. Oinn. Taverna: a tool for building and running work ows of services. Nucleic Acids Research, 34(suppl 2):W729-W732, 2006.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. W729-W732
-
-
Hull, D.1
Wolstencroft, K.2
Stevens, R.3
Goble, C.4
Pocock, M.R.5
Li, P.6
Oinn, T.7
-
14
-
-
84857017025
-
Yabi: An online research environment for grid, high performance and cloud computing
-
A. Hunter, A. Macgregor, T. Szabo, C. Wellington, and M. Bellgard. Yabi: An online research environment for grid, high performance and cloud computing. Source Code for Biology and Medicine, 7(1):1, 2012.
-
(2012)
Source Code for Biology and Medicine
, vol.7
, Issue.1
, pp. 1
-
-
Hunter, A.1
Macgregor, A.2
Szabo, T.3
Wellington, C.4
Bellgard, M.5
-
17
-
-
13444272128
-
Biolingua: A programmable knowledge environment for biologists
-
Jan
-
J. P. Massar, M. Travers, J. Elhai, and J. Shrager. BioLingua: a programmable knowledge environment for biologists. Bioinformatics, 21(2):199-207, Jan. 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.2
, pp. 199-207
-
-
Massar, J.P.1
Travers, M.2
Elhai, J.3
Shrager, J.4
-
18
-
-
51149123030
-
Usability and usefulness in bioinformatics: Evaluating a tool for querying and analyzing protein interactions based on scientists' actual research questions
-
Seattle, Washington, United States IEEE International
-
B. Mirel. Usability and usefulness in bioinformatics: Evaluating a tool for querying and analyzing protein interactions based on scientists' actual research questions. In Intergovernmental Panel on Climate Change, pages 1-8, Seattle, Washington, United States, 2007. IEEE International.
-
(2007)
Intergovernmental Panel on Climate Change
, pp. 1-8
-
-
Mirel, B.1
-
19
-
-
84859742466
-
Unipro ugene: A unified bioinformatics toolkit
-
and others
-
K. Okonechnikov, O. Golosova, M. Fursov, and others. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics, 28(8):1166-1167, 2012.
-
(2012)
Bioinformatics
, vol.28
, Issue.8
, pp. 1166-1167
-
-
Okonechnikov, K.1
Golosova, O.2
Fursov, M.3
-
20
-
-
84864631234
-
Bioinformatics meets user-centred design: A perspective
-
K. Pavelin, J. A. Cham, P. de Matos, C. Brooksbank, G. Cameron, and C. Steinbeck. Bioinformatics meets user-centred design: A perspective. PLoS Comput Biol, 8(7):e1002554, 07 2012.
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.7
, pp. e100255407
-
-
Pavelin, K.1
Cham, J.A.2
De Matos, P.3
Brooksbank, C.4
Cameron, G.5
Steinbeck, C.6
-
21
-
-
84866348617
-
DNA sequencing caught in deluge of data
-
Nov
-
A. Pollack. DNA Sequencing Caught in Deluge of Data. The New York Times, Nov. 2011.
-
(2011)
The New York Times
-
-
Pollack, A.1
-
23
-
-
0040442339
-
Beyond black boxes: Bringing transparency and aesthetics back to scientific investigation
-
M. Resnick, R. Berg, and M. Eisenberg. Beyond black boxes: Bringing transparency and aesthetics back to scientific investigation. The Journal of the Learning Sciences, 9(1):7-30, 2000.
-
(2000)
The Journal of the Learning Sciences
, vol.9
, Issue.1
, pp. 7-30
-
-
Resnick, M.1
Berg, R.2
Eisenberg, M.3
-
24
-
-
85006219382
-
Ten recommendations for creating usable bioinformatics command line software
-
T. Seemann. Ten recommendations for creating usable bioinformatics command line software. GigaScience, 2(1):15, 2013.
-
(2013)
GigaScience
, vol.2
, Issue.1
, pp. 15
-
-
Seemann, T.1
-
25
-
-
18644368714
-
The bioperl toolkit: Perl modules for the life sciences
-
J. E. Stajich, D. Block, K. Boulez, S. E. Brenner, S. A. Chervitz, C. Dagdigian, G. Fuellen, J. G. R. Gilbert, I. Korf, H. Lapp, H. Lehvaslaiho, C. Matsalla, C. J. Mungall, B. I. Osborne, M. R. Pocock, P. Schattner, M. Senger, L. D. Stein, E. Stupka, M. D. Wilkinson, and E. Birney. The bioperl toolkit: Perl modules for the life sciences. Genome Research, 12:1611-1618, 2002.
-
(2002)
Genome Research
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.G.R.8
Korf, I.9
Lapp, H.10
Lehvaslaiho, H.11
Matsalla, C.12
Mungall, C.J.13
Osborne, B.I.14
Pocock, M.R.15
Schattner, P.16
Senger, M.17
Stein, L.D.18
Stupka, E.19
Wilkinson, M.D.20
Birney, E.21
more..
-
26
-
-
0037046558
-
Creating a bioinformatics nation
-
May
-
L. Stein. Creating a bioinformatics nation. Nature, 417(6885):119-120, May 2002.
-
(2002)
Nature
, vol.417
, Issue.6885
, pp. 119-120
-
-
Stein, L.1
-
27
-
-
84555179077
-
The elabbench: An interactive tabletop system for the biology laboratory
-
ACM
-
A. Tabard, J.-D. Hincapi-Ramos, M. Esbensen, and J. E. Bardram. The eLabBench: an interactive tabletop system for the biology laboratory. In Proc. of ITS'11, pages 202-211. ACM, 2011.
-
(2011)
Proc. of ITS'11
, pp. 202-211
-
-
Tabard, A.1
Hincapi-Ramos, J.-D.2
Esbensen, M.3
Bardram, J.E.4
-
28
-
-
77955229035
-
Applying task analysis to describe and facilitate bioinformatics tasks
-
D. Tran, C. Dubay, P. Gorman, and W. Hersh. Applying Task Analysis to Describe and Facilitate Bioinformatics Tasks. Medinfo, page 818, 2004.
-
(2004)
Medinfo
, pp. 818
-
-
Tran, D.1
Dubay, C.2
Gorman, P.3
Hersh, W.4
-
29
-
-
33745870525
-
Butter ynet: A mobile capture and access system for field biology research
-
ACM
-
R. Yeh, C. Liao, S. Klemmer, F. Guimbreti~Alre, B. Lee, B. Kakaradov, J. Stamberger, and A. Paepcke. Butter yNet: a mobile capture and access system for field biology research. In Proc. of the CHI'06, pages 571-580. ACM, 2006.
-
(2006)
Proc. of the CHI'06
, pp. 571-580
-
-
Yeh, R.1
Liao, C.2
Klemmer, S.3
Guimbretialre, F.4
Lee, B.5
Kakaradov, B.6
Stamberger, J.7
Paepcke, A.8
-
30
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de bruijn graphs
-
D. R. Zerbino and E. Birney. Velvet: Algorithms for de novo short read assembly using de bruijn graphs. Genome Research, 18(5):821-829, 2008.
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
31
-
-
79952655567
-
A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies
-
W. Zhang, J. Chen, Y. Yang, Y. Tang, J. Shang, and B. Shen. A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies. PloS ONE, 3(6):e17915, 2011.
-
(2011)
PloS ONE
, vol.3
, Issue.6
, pp. e17915
-
-
Zhang, W.1
Chen, J.2
Yang, Y.3
Tang, Y.4
Shang, J.5
Shen, B.6
|