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Volumn 14, Issue 1, 2017, Pages

Conserved signatures indicate HIV-1 transmission is under strong selection and thus is not a "stochastic" process

Author keywords

Phenotypic versus genotypic selection; Selection during HIV transmission; T F; Transmission signatures; Transmitted founder virus

Indexed keywords

HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN VERSUS ANIMAL COMPARISON; IN VITRO STUDY; NONHUMAN; SIMIAN IMMUNODEFICIENCY VIRUS; STOCHASTIC MODEL; SWISS; ANIMAL; GENETICS; GENOTYPE; HUMAN IMMUNODEFICIENCY VIRUS INFECTION;

EID: 85013742100     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/s12977-016-0326-1     Document Type: Letter
Times cited : (4)

References (17)
  • 1
    • 84985027694 scopus 로고    scopus 로고
    • Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs
    • Oberle CS, et al. Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs. Retrovirology. 2016;13(1):62.
    • (2016) Retrovirology , vol.13 , Issue.1 , pp. 62
    • Oberle, C.S.1
  • 2
    • 80053452761 scopus 로고    scopus 로고
    • Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections
    • Gnanakaran S, et al. Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections. PLoS Pathog. 2011;7(9):e1002209.
    • (2011) PLoS Pathog , vol.7 , Issue.9
    • Gnanakaran, S.1
  • 3
    • 84924787177 scopus 로고    scopus 로고
    • Conserved molecular signatures in gp120 are associated with the genetic bottleneck during simian immunodeficiency virus (SIV), SIV-human immunodeficiency virus (SHIV), and HIV type 1 (HIV-1) transmission
    • Gonzalez MW, et al. Conserved molecular signatures in gp120 are associated with the genetic bottleneck during simian immunodeficiency virus (SIV), SIV-human immunodeficiency virus (SHIV), and HIV type 1 (HIV-1) transmission. J Virol. 2015;89(7):3619-29.
    • (2015) J Virol , vol.89 , Issue.7 , pp. 3619-3629
    • Gonzalez, M.W.1
  • 4
    • 84958074290 scopus 로고    scopus 로고
    • Signatures in Simian immunodeficiency virus SIVsmE660 envelope gp120 are associated with mucosal transmission but not vaccination breakthrough in rhesus macaques
    • Smith SA, et al. Signatures in Simian immunodeficiency virus SIVsmE660 envelope gp120 are associated with mucosal transmission but not vaccination breakthrough in rhesus macaques. J Virol. 2016;90(4):1880-7.
    • (2016) J Virol , vol.90 , Issue.4 , pp. 1880-1887
    • Smith, S.A.1
  • 5
    • 66049157864 scopus 로고    scopus 로고
    • Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1
    • Keele BF, et al. Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1. J Exp Med. 2009;206(5):1117-34.
    • (2009) J Exp Med , vol.206 , Issue.5 , pp. 1117-1134
    • Keele, B.F.1
  • 6
    • 84892786095 scopus 로고    scopus 로고
    • Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV
    • Roederer M, et al. Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV. Nature. 2014;505(7484):502-8.
    • (2014) Nature , vol.505 , Issue.7484 , pp. 502-508
    • Roederer, M.1
  • 7
    • 84872203837 scopus 로고    scopus 로고
    • Molecular identification, cloning and characterization of transmitted/founder HIV-1 subtype A, D and A/D infectious molecular clones
    • Baalwa J, et al. Molecular identification, cloning and characterization of transmitted/founder HIV-1 subtype A, D and A/D infectious molecular clones. Virology. 2013;436(1):33-48.
    • (2013) Virology , vol.436 , Issue.1 , pp. 33-48
    • Baalwa, J.1
  • 8
    • 56649105122 scopus 로고    scopus 로고
    • Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the step study): a double-blind, randomised, placebo-controlled, test-of-concept trial
    • Buchbinder SP, et al. Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the step study): a double-blind, randomised, placebo-controlled, test-of-concept trial. Lancet. 2008;372(9653):1881-93.
    • (2008) Lancet , vol.372 , Issue.9653 , pp. 1881-1893
    • Buchbinder, S.P.1
  • 9
    • 79952445068 scopus 로고    scopus 로고
    • Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial
    • Rolland M, et al. Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial. Nat Med. 2011;17(3):366-71.
    • (2011) Nat Med , vol.17 , Issue.3 , pp. 366-371
    • Rolland, M.1
  • 10
    • 0034161409 scopus 로고    scopus 로고
    • Effect of breastfeeding and formula feeding on transmission of HIV-1: a randomized clinical trial
    • Nduati R, et al. Effect of breastfeeding and formula feeding on transmission of HIV-1: a randomized clinical trial. JAMA. 2000;283(9):1167-74.
    • (2000) JAMA , vol.283 , Issue.9 , pp. 1167-1174
    • Nduati, R.1
  • 11
    • 30344485709 scopus 로고    scopus 로고
    • Neutralization escape variants of human immunodeficiency virus type 1 are transmitted from mother to infant
    • Wu X, et al. Neutralization escape variants of human immunodeficiency virus type 1 are transmitted from mother to infant. J Virol. 2006;80(2):835-44.
    • (2006) J Virol , vol.80 , Issue.2 , pp. 835-844
    • Wu, X.1
  • 12
    • 66049139947 scopus 로고    scopus 로고
    • Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
    • Salazar-Gonzalez JF, et al. Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J Exp Med. 2009;206(6):1273-89.
    • (2009) J Exp Med , vol.206 , Issue.6 , pp. 1273-1289
    • Salazar-Gonzalez, J.F.1
  • 13
    • 84886902378 scopus 로고    scopus 로고
    • Neutralizing IgG at the portal of infection mediates protection against vaginal simian/human immunodeficiency virus challenge
    • Klein K, et al. Neutralizing IgG at the portal of infection mediates protection against vaginal simian/human immunodeficiency virus challenge. J Virol. 2013;87(21):11604-16.
    • (2013) J Virol , vol.87 , Issue.21 , pp. 11604-11616
    • Klein, K.1
  • 14
    • 84940771125 scopus 로고    scopus 로고
    • Human non-neutralizing HIV-1 envelope monoclonal antibodies limit the number of founder viruses during SHIV mucosal infection in rhesus macaques
    • Santra S, et al. Human non-neutralizing HIV-1 envelope monoclonal antibodies limit the number of founder viruses during SHIV mucosal infection in rhesus macaques. PLoS Pathog. 2015;11(8):e1005042.
    • (2015) PLoS Pathog , vol.11 , Issue.8
    • Santra, S.1
  • 15
    • 0033012398 scopus 로고    scopus 로고
    • Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease
    • Berger EA, Murphy PM, Farber JM. Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease. Annu Rev Immunol. 1999;17:657-700.
    • (1999) Annu Rev Immunol , vol.17 , pp. 657-700
    • Berger, E.A.1    Murphy, P.M.2    Farber, J.M.3
  • 16
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: a sequence logo generator
    • Crooks GE, et al. WebLogo: a sequence logo generator. Genome Res. 2004;14(6):1188-90.
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1
  • 17
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider TD, Stephens RM. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 1990;18(20):6097-100.
    • (1990) Nucleic Acids Res , vol.18 , Issue.20 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.