-
1
-
-
84908302117
-
Promiscuous and adaptable enzymes fill 'holes' in the tetrahydrofolate pathway in Chlamydia species
-
Adams NE, Thiaville JJ, Proestos J, Juarez-Vazquez AL, McCoy AJ, Barona-Gomez F et al. (2014). Promiscuous and adaptable enzymes fill 'holes' in the tetrahydrofolate pathway in Chlamydia species. MBio 5: e01378-01314.
-
(2014)
MBio
, vol.5
, pp. e01378-e01314
-
-
Adams, N.E.1
Thiaville, J.J.2
Proestos, J.3
Juarez-Vazquez, A.L.4
McCoy, A.J.5
Barona-Gomez, F.6
-
2
-
-
77955437093
-
A eubacterial riboswitch class that senses the coen-zyme tetrahydrofolate
-
Ames TD, Rodionov DA, Weinberg Z, Breaker RR. (2010). A eubacterial riboswitch class that senses the coen-zyme tetrahydrofolate. Chem Biol 17: 681-685.
-
(2010)
Chem Biol
, vol.17
, pp. 681-685
-
-
Ames, T.D.1
Rodionov, D.A.2
Weinberg, Z.3
Breaker, R.R.4
-
3
-
-
33646396075
-
Chromatographic study of photolysis of aqueous cyanocobalamin solution in presence of vitamins B and C
-
Ansari IA, Vaid FH, Ahmad I. (2004). Chromatographic study of photolysis of aqueous cyanocobalamin solution in presence of vitamins B and C. Pak J Pharm Sci 17: 19-24.
-
(2004)
Pak J Pharm Sci
, vol.17
, pp. 19-24
-
-
Ansari, I.A.1
Vaid, F.H.2
Ahmad, I.3
-
4
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA et al. (2008). The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
-
5
-
-
84938841197
-
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
-
Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ et al. (2015). RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep 5: 8365.
-
(2015)
Sci Rep
, vol.5
, pp. 8365
-
-
Brettin, T.1
Davis, J.J.2
Disz, T.3
Edwards, R.A.4
Gerdes, S.5
Olsen, G.J.6
-
6
-
-
84899674636
-
Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: Model systems for the study of autotroph-heterotroph interactions
-
Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE et al. (2014). Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. Front Microbiol 5: 109.
-
(2014)
Front Microbiol
, vol.5
, pp. 109
-
-
Cole, J.K.1
Hutchison, J.R.2
Renslow, R.S.3
Kim, Y.M.4
Chrisler, W.B.5
Engelmann, H.E.6
-
9
-
-
84978081255
-
The AbgT family: A novel class of antimetabolite transporters
-
Delmar JA, Yu EW. (2016). The AbgT family: a novel class of antimetabolite transporters. Protein Sci 25: 322-337.
-
(2016)
Protein Sci
, vol.25
, pp. 322-337
-
-
Delmar, J.A.1
Yu, E.W.2
-
10
-
-
79952467900
-
1) biosynthesis and regulation: A rich source of antimicrobial drug targets?
-
1) biosynthesis and regulation: a rich source of antimicrobial drug targets? Int J Biol Sci 7: 41-52.
-
(2011)
Int J Biol Sci
, vol.7
, pp. 41-52
-
-
Du, Q.1
Wang, H.2
Xie, J.3
-
11
-
-
84883262670
-
Solitary BioY proteins mediate biotin transport into recombinant Escherichia coli
-
Finkenwirth F, Kirsch F, Eitinger T. (2013). Solitary BioY proteins mediate biotin transport into recombinant Escherichia coli. J Bacteriol 195: 4105-4111.
-
(2013)
J Bacteriol
, vol.195
, pp. 4105-4111
-
-
Finkenwirth, F.1
Kirsch, F.2
Eitinger, T.3
-
12
-
-
84933556355
-
ECOLOGY. Ecological communities by design
-
Fredrickson JK. (2015). ECOLOGY. Ecological communities by design. Science 348: 1425-1427.
-
(2015)
Science
, vol.348
, pp. 1425-1427
-
-
Fredrickson, J.K.1
-
13
-
-
81155132250
-
Identification of nicotina-mide mononucleotide deamidase of the bacterial pyridine nucleotide cycle reveals a novel broadly conserved amidohydrolase family
-
Galeazzi L, Bocci P, Amici A, Brunetti L, Ruggieri S, Romine M et al. (2011). Identification of nicotina-mide mononucleotide deamidase of the bacterial pyridine nucleotide cycle reveals a novel broadly conserved amidohydrolase family. J Biol Chem 286: 40365-40375.
-
(2011)
J Biol Chem
, vol.286
, pp. 40365-40375
-
-
Galeazzi, L.1
Bocci, P.2
Amici, A.3
Brunetti, L.4
Ruggieri, S.5
Romine, M.6
-
16
-
-
84903391540
-
12 is demonstrated by modelling the growth dynamics of algal-bacterial cocultures
-
12 is demonstrated by modelling the growth dynamics of algal-bacterial cocultures. ISME J 8: 1418-1427.
-
(2014)
ISME J
, vol.8
, pp. 1418-1427
-
-
Ma, G.1
Kazamia, E.2
Cicuta, P.3
Smith, A.G.4
-
19
-
-
82455188342
-
RibM from Streptomyces davawensis is a riboflavin/roseoflavin transporter and may be useful for the optimization of riboflavin production strains
-
Hemberger S, Pedrolli DB, Stolz J, Vogl C, Lehmann M, Mack M. (2011). RibM from Streptomyces davawensis is a riboflavin/roseoflavin transporter and may be useful for the optimization of riboflavin production strains. BMC Biotechnol 11: 119.
-
(2011)
BMC Biotechnol
, vol.11
, pp. 119
-
-
Hemberger, S.1
Pedrolli, D.B.2
Stolz, J.3
Vogl, C.4
Lehmann, M.5
Mack, M.6
-
20
-
-
84921020525
-
Diversity of membrane transport proteins for vitamins in bacteria and archaea
-
Jaehme M, Slotboom DJ. (2015a). Diversity of membrane transport proteins for vitamins in bacteria and archaea. Biochim Biophys Acta 1850: 565-576.
-
(2015)
Biochim Biophys Acta
, vol.1850
, pp. 565-576
-
-
Jaehme, M.1
Slotboom, D.J.2
-
21
-
-
84937531605
-
Structure, function, evolution, and application of bacterial Pnu-type vitamin transporters
-
Jaehme M, Slotboom DJ. (2015b). Structure, function, evolution, and application of bacterial Pnu-type vitamin transporters. Biol Chem 396: 955-966.
-
(2015)
Biol Chem
, vol.396
, pp. 955-966
-
-
Jaehme, M.1
Slotboom, D.J.2
-
22
-
-
84959528568
-
BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences
-
Kanehisa M, Sato Y, Morishima K. (2016). BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J Mol Biol 428: 726-731.
-
(2016)
J Mol Biol
, vol.428
, pp. 726-731
-
-
Kanehisa, M.1
Sato, Y.2
Morishima, K.3
-
23
-
-
0036710534
-
Nutrient dynamics in the deep blue sea
-
Karl DM. (2002). Nutrient dynamics in the deep blue sea. Trends Microbiol 10: 410-418.
-
(2002)
Trends Microbiol
, vol.10
, pp. 410-418
-
-
Karl, D.M.1
-
25
-
-
85047766839
-
Comparative genomics and evolution of transcriptional regulons in Proteobacteria
-
e-pub ahead of print 7 July 2016;
-
Leyn SA, Stepanova VV, Suvorova IA, Kazakov AE, Novichkov PS, Rodionov DA et al. (2016). Comparative genomics and evolution of transcriptional regulons in Proteobacteria. Microb Genomics; e-pub ahead of print 7 July 2016; doi:10.1099/mgen.0.000061.
-
(2016)
Microb Genomics
-
-
Leyn, S.A.1
Stepanova, V.V.2
Suvorova, I.A.3
Kazakov, A.E.4
Novichkov, P.S.5
Rodionov, D.A.6
-
26
-
-
84890256295
-
The epsomitic phototrophic microbial mat of Hot Lake, Washington: Community structural responses to seasonal cycling
-
Lindemann S.R, Moran JJ, Stegen JC, Renslow RS, Hutchison JR, Cole JK et al. (2013). The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling. Front Micro-biol 4: 323.
-
(2013)
Front Micro-biol
, vol.4
, pp. 323
-
-
Lindemann, S.R.1
Moran, J.J.2
Stegen, J.C.3
Renslow, R.S.4
Hutchison, J.R.5
Cole, J.K.6
-
27
-
-
84927124979
-
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
-
Magnusdottir S, Ravcheev D, de Crecy-Lagard V, Thiele I. (2015). Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes. Front Genet 6: 148.
-
(2015)
Front Genet
, vol.6
, pp. 148
-
-
Magnusdottir, S.1
Ravcheev, D.2
De Crecy-Lagard, V.3
Thiele, I.4
-
28
-
-
84891820094
-
IMG 4 version of the integrated microbial genomes comparative analysis system
-
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Pillay M et al. (2014). IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res 42: D560-D567.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D560-D567
-
-
Markowitz, V.M.1
Chen, I.M.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Pillay, M.6
-
30
-
-
84953884747
-
Identification and resolution of microdiversity through metagenomic sequencing of parallel consortia
-
Nelson WC, Maezato Y, Wu YW, Romine MF, Lindemann S.R. (2016). Identification and resolution of microdiversity through metagenomic sequencing of parallel consortia. Appl Environ Microbiol 82: 255-267.
-
(2016)
Appl Environ Microbiol
, vol.82
, pp. 255-267
-
-
Nelson, W.C.1
Maezato, Y.2
Wu, Y.W.3
Romine, M.F.4
Lindemann, S.R.5
-
31
-
-
79958861315
-
The use of subsystems to encode biosynthesis of vitamins and cofactors
-
Mander LN, Liu H (eds) Elsevier Ltd.: Kidlington, UK
-
Osterman AL, Overbeek R, Rodionov DA. (2010). The use of subsystems to encode biosynthesis of vitamins and cofactors. In: Mander LN, Liu H (eds). Comprehensive Natural Products II: Chemistry and Biology. Elsevier Ltd.: Kidlington, UK, pp 141-159.
-
(2010)
Comprehensive Natural Products II: Chemistry and Biology
, pp. 141-159
-
-
Osterman, A.L.1
Overbeek, R.2
Rodionov, D.A.3
-
32
-
-
84891804612
-
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
-
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T et al. (2014). The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res 42: D206-D214.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
-
34
-
-
58149490653
-
A novel class of modular transporters for vitamins in prokaryotes
-
Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB et al. (2009). A novel class of modular transporters for vitamins in prokaryotes. J Bacteriol 191: 42-51.
-
(2009)
J Bacteriol
, vol.191
, pp. 42-51
-
-
Rodionov, D.A.1
Hebbeln, P.2
Eudes, A.3
Ter Beek, J.4
Rodionova, I.A.5
Erkens, G.B.6
-
35
-
-
84924694174
-
Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chlor-oflexi phylum
-
Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF et al. (2015). Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chlor-oflexi phylum. Environ Microbiol Rep 7: 204-210.
-
(2015)
Environ Microbiol Rep
, vol.7
, pp. 204-210
-
-
Rodionova, I.A.1
Li, X.2
Plymale, A.E.3
Motamedchaboki, K.4
Konopka, A.E.5
Romine, M.F.6
-
37
-
-
0022294772
-
Nicotinic acid transport in Escherichia coli
-
Rowe JJ, Lemmon RD, Tritz GJ. (1985). Nicotinic acid transport in Escherichia coli. Microbios 44: 169-184.
-
(1985)
Microbios
, vol.44
, pp. 169-184
-
-
Rowe, J.J.1
Lemmon, R.D.2
Tritz, G.J.3
-
40
-
-
84953864880
-
Integrating ecological and engineering concepts of resilience in microbial communities
-
Song HS, Renslow RS, Fredrickson JK, Lindemann S.R. (2015). Integrating ecological and engineering concepts of resilience in microbial communities. Front Micro-biol 6: 1298.
-
(2015)
Front Micro-biol
, vol.6
, pp. 1298
-
-
Song, H.S.1
Renslow, R.S.2
Fredrickson, J.K.3
Lindemann, S.R.4
-
41
-
-
84883189709
-
Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria
-
Sun EI, Leyn SA, Kazanov MD, Saier MH Jr, Novichkov PS, Rodionov DA. (2013). Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria. BMC Genomics 14: 597.
-
(2013)
BMC Genomics
, vol.14
, pp. 597
-
-
Sun, E.I.1
Leyn, S.A.2
Kazanov, M.D.3
Saier, M.H.4
Novichkov, P.S.5
Rodionov, D.A.6
-
42
-
-
84908056197
-
Computational analysis of riboswitch-based regulation
-
Sun EI, Rodionov DA. (2014). Computational analysis of riboswitch-based regulation. Biochim Biophys Acta 1839: 900-907.
-
(2014)
Biochim Biophys Acta
, vol.1839
, pp. 900-907
-
-
Sun, E.I.1
Rodionov, D.A.2
-
43
-
-
85019538539
-
Comparative genomics of pyridoxal 5′-phosphate-dependent transcription factor regulons in Bacteria
-
e-pub ahead of print 19 January 2016;
-
Suvorova IA, Rodionov DA. (2016). Comparative genomics of pyridoxal 5′-phosphate-dependent transcription factor regulons in Bacteria. Microb Genomics; e-pub ahead of print 19 January 2016; doi:10.1099/mgen.0.000047.
-
(2016)
Microb Genomics
-
-
Suvorova, I.A.1
Rodionov, D.A.2
-
44
-
-
38949123145
-
Pseudo-B12 joins the cofactor family
-
Taga ME, Walker GC. (2008). Pseudo-B12 joins the cofactor family. J Bacteriol 190: 1157-1159.
-
(2008)
J Bacteriol
, vol.190
, pp. 1157-1159
-
-
Taga, M.E.1
Walker, G.C.2
-
47
-
-
35548941950
-
12 sources and bioavail-ability
-
12 sources and bioavail-ability. Exp Biol Med (Maywood) 232: 1266-1274.
-
(2007)
Exp Biol Med (Maywood)
, vol.232
, pp. 1266-1274
-
-
Watanabe, F.1
-
48
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
Winkler W, Nahvi A, Breaker RR. (2002a). Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419: 952-956.
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
50
-
-
10644224511
-
Formation of methane by bacterial extracts
-
Wolin EA, Wolin MJ, Wolfe RS. (1963). Formation of methane by bacterial extracts. J Biol Chem 238: 2882-2886.
-
(1963)
J Biol Chem
, vol.238
, pp. 2882-2886
-
-
Wolin, E.A.1
Wolin, M.J.2
Wolfe, R.S.3
-
51
-
-
24344486795
-
ABC transporter for corrinoids in Halobacterium sp. Strain NRC-1
-
Woodson JD, Reynolds AA, Escalante-Semerena JC. (2005). ABC transporter for corrinoids in Halobacterium sp. strain NRC-1. J Bacteriol 187: 5901-5909.
-
(2005)
J Bacteriol
, vol.187
, pp. 5901-5909
-
-
Woodson, J.D.1
Reynolds, A.A.2
Escalante-Semerena, J.C.3
-
52
-
-
84960859957
-
Geo-and biogeochemical processes in a heliothermal hypersaline lake
-
Zachara JM, Moran JJ, Resch CT, Lindemann S.R, Felmy AR, Bowden ME et al. (2016). Geo-and biogeochemical processes in a heliothermal hypersaline lake. Geochim Cosmochim Acta 181: 144-163.
-
(2016)
Geochim Cosmochim Acta
, vol.181
, pp. 144-163
-
-
Zachara, J.M.1
Moran, J.J.2
Resch, C.T.3
Lindemann, S.R.4
Felmy, A.R.5
Bowden, M.E.6
|