-
1
-
-
0011343769
-
How ribosomes select initiator regions in mRNA: Base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli
-
Steitz JA, Jakes K. How ribosomes select initiator regions in mRNA: base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc Natl Acad Sci USA 1975; 72:4734-8.
-
(1975)
Proc Natl Acad Sci USA
, vol.72
, pp. 4734-4738
-
-
Steitz, J.A.1
Jakes, K.2
-
2
-
-
0024546509
-
The scanning model for translation: An update
-
Kozak M. The scanning model for translation: an update. J Cell Biol 1989; 108:229-41.
-
(1989)
J Cell Biol
, vol.108
, pp. 229-241
-
-
Kozak, M.1
-
3
-
-
0037142086
-
A global analysis of Caenorhabditis elegans operons
-
Blumenthal T, Evans D, Link CD, Guffanti A, Lawson D, Thierry-Mieg J, Thierry-Mieg D, Chiu WL, Duke K, Kiraly M, Kim SK. A global analysis of Caenorhabditis elegans operons. Nature 2002; 417:851-4.
-
(2002)
Nature
, vol.417
, pp. 851-854
-
-
Blumenthal, T.1
Evans, D.2
Link, C.D.3
Guffanti, A.4
Lawson, D.5
Thierry-Mieg, J.6
Thierry-Mieg, D.7
Chiu, W.L.8
Duke, K.9
Kiraly, M.10
Kim, S.K.11
-
4
-
-
13844318119
-
-
Blumenthal T. Operons in eukaryotes. Brief Funct Genomic Proteomic 2004; 3:199-211.
-
Blumenthal T. Operons in eukaryotes. Brief Funct Genomic Proteomic 2004; 3:199-211.
-
-
-
-
5
-
-
0029795968
-
The Stoned Locus Of Drosophila Melanogaster Produces a Dicistronic Transcript and Encodes 2 Distinct Polypeptides
-
Andrews J, Smith M, Merakovsky J, Coulson M, Hannan F, Kelly LE. The Stoned Locus Of Drosophila Melanogaster Produces a Dicistronic Transcript and Encodes 2 Distinct Polypeptides. Genetics 1996; 143:1699-711.
-
(1996)
Genetics
, vol.143
, pp. 1699-1711
-
-
Andrews, J.1
Smith, M.2
Merakovsky, J.3
Coulson, M.4
Hannan, F.5
Kelly, L.E.6
-
6
-
-
34249021370
-
Peptides encoded by short ORFs control development and define a new eukaryotic gene family
-
Galindo MI, Pueyo JI, Fouix S, Bishop SA, Couso JP. Peptides encoded by short ORFs control development and define a new eukaryotic gene family. PLoS Biol 2007; 5:106.
-
(2007)
PLoS Biol
, vol.5
, pp. 106
-
-
Galindo, M.I.1
Pueyo, J.I.2
Fouix, S.3
Bishop, S.A.4
Couso, J.P.5
-
7
-
-
33746736922
-
A segmentation gene in tribolium produces a polycistronic mRNA that codes for multiple conserved peptides
-
Savard J, Marques-Souza H, Aranda M, Tautz D. A segmentation gene in tribolium produces a polycistronic mRNA that codes for multiple conserved peptides. Cell 2006; 126:559-69.
-
(2006)
Cell
, vol.126
, pp. 559-569
-
-
Savard, J.1
Marques-Souza, H.2
Aranda, M.3
Tautz, D.4
-
8
-
-
0030933005
-
The Adh-related gene of Drosophila melanogaster is expressed as a functional dicistronic messenger RNA: Multigenic transcription in higher organisms
-
Brogna S, Ashburner M. The Adh-related gene of Drosophila melanogaster is expressed as a functional dicistronic messenger RNA: Multigenic transcription in higher organisms. EMBO J 1997; 16:2023-31.
-
(1997)
EMBO J
, vol.16
, pp. 2023-2031
-
-
Brogna, S.1
Ashburner, M.2
-
9
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
-
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE. Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol 2002; 3:83.
-
(2002)
Genome Biol
, vol.3
, pp. 83
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
Hradecky, P.6
Huang, Y.7
Kaminker, J.S.8
Millburn, G.H.9
Prochnik, S.E.10
Smith, C.D.11
Tupy, J.L.12
Whitfied, E.J.13
Bayraktaroglu, L.14
Berman, B.P.15
Bettencourt, B.R.16
Celniker, S.E.17
de Grey, A.D.18
Drysdale, R.A.19
Harris, N.L.20
Richter, J.21
Russo, S.22
Schroeder, A.J.23
Shu, S.Q.24
Stapleton, M.25
Yamada, C.26
Ashburner, M.27
Gelbart, W.M.28
Rubin, G.M.29
Lewis, S.E.30
more..
-
10
-
-
36049018312
-
-
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Curators HF, Project BD, Hodges E, Hinrichs AS, Caspi A, Paten B, Park SW, Han MV, Maeder ML, Polansky BJ, Robson BE, Aerts S, van Helden J, Hassan B, Gilbert DG, Eastman DA, Rice M, Weir M, Hahn MW, Park Y, Dewey CN, Pachter L, Kent WJ, Haussler D, Lai EC, Bartel DP, Hannon GJ, Kaufman TC, Eisen MB, Clark AG, Smith D, Celniker SE, Gelbart WM, Kellis M, Crosby MA, Matthews BB, Schroeder AJ, Sian Gramates L, St Pierre SE, Roark M, Wiley KL Jr, Kulathinal RJ, Zhang P, Myrick KV, Antone JV, Gelbart WM, Carlson JW, Yu C, Park S, Wan KH, Celniker SE. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 2007; 450:219-32.
-
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Curators HF, Project BD, Hodges E, Hinrichs AS, Caspi A, Paten B, Park SW, Han MV, Maeder ML, Polansky BJ, Robson BE, Aerts S, van Helden J, Hassan B, Gilbert DG, Eastman DA, Rice M, Weir M, Hahn MW, Park Y, Dewey CN, Pachter L, Kent WJ, Haussler D, Lai EC, Bartel DP, Hannon GJ, Kaufman TC, Eisen MB, Clark AG, Smith D, Celniker SE, Gelbart WM, Kellis M, Crosby MA, Matthews BB, Schroeder AJ, Sian Gramates L, St Pierre SE, Roark M, Wiley KL Jr, Kulathinal RJ, Zhang P, Myrick KV, Antone JV, Gelbart WM, Carlson JW, Yu C, Park S, Wan KH, Celniker SE. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 2007; 450:219-32.
-
-
-
-
11
-
-
0029437960
-
Internal initiation of translation in eukaryotes: The picornavirus paradigm and beyond
-
Jackson RJ, Kaminski A. Internal initiation of translation in eukaryotes: The picornavirus paradigm and beyond. RNA 1995; 1:985-1000.
-
(1995)
RNA
, vol.1
, pp. 985-1000
-
-
Jackson, R.J.1
Kaminski, A.2
-
12
-
-
28844476749
-
Alternative mechanisms of initiating translation of mammalian mRNAs
-
Jackson RJ. Alternative mechanisms of initiating translation of mammalian mRNAs. Biochem Soc Trans 2005; 33:1231-41.
-
(2005)
Biochem Soc Trans
, vol.33
, pp. 1231-1241
-
-
Jackson, R.J.1
-
13
-
-
21244431682
-
Internal ribosome entry sites in cellular mRNAs: Mystery of their existence
-
Komar AA, Hatzoglou M. Internal ribosome entry sites in cellular mRNAs: mystery of their existence. J Biol Chem 2005; 280:23425-8.
-
(2005)
J Biol Chem
, vol.280
, pp. 23425-23428
-
-
Komar, A.A.1
Hatzoglou, M.2
-
15
-
-
23044487223
-
Effective translation of the second cistron in two Drosophila dicistronic transcripts is determined by the absence of in-frame AUG codons in the first cistron
-
Wall AA, Phillips AM, Kelly LE. Effective translation of the second cistron in two Drosophila dicistronic transcripts is determined by the absence of in-frame AUG codons in the first cistron. J Biol Chem 2005; 280:27670-8.
-
(2005)
J Biol Chem
, vol.280
, pp. 27670-27678
-
-
Wall, A.A.1
Phillips, A.M.2
Kelly, L.E.3
-
16
-
-
0033866762
-
Duplication, dicistronic transcription and subsequent evolution of the Alcohol dehydrogenase and Alcohol dehydrogenase-related genes in Drosophila
-
Betran E, Ashburner M. Duplication, dicistronic transcription and subsequent evolution of the Alcohol dehydrogenase and Alcohol dehydrogenase-related genes in Drosophila. Mol Biol Evol 2000; 17:1344-52.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1344-1352
-
-
Betran, E.1
Ashburner, M.2
-
17
-
-
0031024996
-
Ultrabithorax and Antennapedia 5′ untranslated regions promote developmentally regulated internal translation initiation
-
Ye X, Fong P, Iizuka N, Choate D, Cavener DR. Ultrabithorax and Antennapedia 5′ untranslated regions promote developmentally regulated internal translation initiation. Mol Cell Biol 1997; 17:1714-21.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 1714-1721
-
-
Ye, X.1
Fong, P.2
Iizuka, N.3
Choate, D.4
Cavener, D.R.5
-
18
-
-
0029978413
-
A test for cell autonomy, based on di-cistronic messanger translation
-
Hart K, Bienz M. A test for cell autonomy, based on di-cistronic messanger translation. Development 1996; 122:747-51.
-
(1996)
Development
, vol.122
, pp. 747-751
-
-
Hart, K.1
Bienz, M.2
-
19
-
-
0028347758
-
The molecular evolution of the alcohol dehydrogenase and alcohol dehydrogenase-related genes in the Drosophila melanogaster species subgroup
-
Jeffs PS, Holmes EC, Ashburner M. The molecular evolution of the alcohol dehydrogenase and alcohol dehydrogenase-related genes in the Drosophila melanogaster species subgroup. Mol Biol Evol 1994; 11:287-304.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 287-304
-
-
Jeffs, P.S.1
Holmes, E.C.2
Ashburner, M.3
-
20
-
-
0035008872
-
New ways of initiating translation in eukaryotes?
-
Kozak M. New ways of initiating translation in eukaryotes? Mol Cell Biol 2001; 21:1899-907.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1899-1907
-
-
Kozak, M.1
-
21
-
-
33646884832
-
Assessing IRES activity in the HIF-1alpha and other cellular 5′ UTRs
-
Bert AG, Grepin R, Vadas MA, Goodall GJ. Assessing IRES activity in the HIF-1alpha and other cellular 5′ UTRs. RNA 2006; 12:1074-83.
-
(2006)
RNA
, vol.12
, pp. 1074-1083
-
-
Bert, A.G.1
Grepin, R.2
Vadas, M.A.3
Goodall, G.J.4
-
22
-
-
42449126726
-
Splicing mediates the activity of four putative cellular internal ribosome entry sites
-
Baranick BT, Lemp NA, Nagashima J, Hiraoka K, Kasahara N, Logg CR. Splicing mediates the activity of four putative cellular internal ribosome entry sites. Proc Natl Acad Sci USA 2008; 105:4733-8.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4733-4738
-
-
Baranick, B.T.1
Lemp, N.A.2
Nagashima, J.3
Hiraoka, K.4
Kasahara, N.5
Logg, C.R.6
-
23
-
-
33646193306
-
Control of mammalian translation by mRNA structure near caps
-
Babendure JR, Babendure JL, Ding JH, Tsien RY. Control of mammalian translation by mRNA structure near caps. RNA 2006; 12:851-61.
-
(2006)
RNA
, vol.12
, pp. 851-861
-
-
Babendure, J.R.1
Babendure, J.L.2
Ding, J.H.3
Tsien, R.Y.4
-
24
-
-
0942268832
-
Splicing enhances translation in mammalian cells: An additional function of the exon junction complex
-
Nott A, Le Hir H, Moore MJ. Splicing enhances translation in mammalian cells: an additional function of the exon junction complex. Genes Dev 2004; 18:210-22.
-
(2004)
Genes Dev
, vol.18
, pp. 210-222
-
-
Nott, A.1
Le Hir, H.2
Moore, M.J.3
-
25
-
-
33750200773
-
An interaction between U2AF 65 and CF I(m) links the splicing and 3′ end processing machineries
-
Millevoi S, Loulergue C, Dettwiler S, Karaa SZ, Keller W, Antoniou M, Vagner S. An interaction between U2AF 65 and CF I(m) links the splicing and 3′ end processing machineries. EMBO J 2006; 25:4854-64.
-
(2006)
EMBO J
, vol.25
, pp. 4854-4864
-
-
Millevoi, S.1
Loulergue, C.2
Dettwiler, S.3
Karaa, S.Z.4
Keller, W.5
Antoniou, M.6
Vagner, S.7
-
26
-
-
33745944934
-
Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3′ end processing and splicing
-
Kyburz A, Friedlein A, Langen H, Keller W. Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3′ end processing and splicing. Mol Cell 2006; 23:195-205.
-
(2006)
Mol Cell
, vol.23
, pp. 195-205
-
-
Kyburz, A.1
Friedlein, A.2
Langen, H.3
Keller, W.4
-
27
-
-
0025029405
-
Point Mutations In Aauaaa and the Poly(a) Addition Site - Effects On the Accuracy and Efficiency Of Cleavage and Polyadenylation In vitro
-
Sheets MD, Ogg SC, Wickens MP. Point Mutations In Aauaaa and the Poly(a) Addition Site - Effects On the Accuracy and Efficiency Of Cleavage and Polyadenylation In vitro. Nucleic Acids Research 1990; 18:5799-805.
-
(1990)
Nucleic Acids Research
, vol.18
, pp. 5799-5805
-
-
Sheets, M.D.1
Ogg, S.C.2
Wickens, M.P.3
-
28
-
-
7044249198
-
Internal ribosome entry site drives cap-independent translation of reaper and heat shock protein 70 mRNAs in Drosophila embryos
-
Hernandez G, Vazquez-Pianzola P, Sierra JM, Rivera-Pomar R. Internal ribosome entry site drives cap-independent translation of reaper and heat shock protein 70 mRNAs in Drosophila embryos. RNA 2004; 10:1783-97.
-
(2004)
RNA
, vol.10
, pp. 1783-1797
-
-
Hernandez, G.1
Vazquez-Pianzola, P.2
Sierra, J.M.3
Rivera-Pomar, R.4
-
29
-
-
0033229825
-
Translational control of dosage compensation in Drosophila by Sex-lethal: Cooperative silencing via the 5′ and 3′ UTRs of msl-2 mRNA is independent of the poly(A) tail
-
Gebauer F, Corona DF, Preiss T, Becker PB, Hentze MW. Translational control of dosage compensation in Drosophila by Sex-lethal: cooperative silencing via the 5′ and 3′ UTRs of msl-2 mRNA is independent of the poly(A) tail. EMBO J 1999; 18:6146-54.
-
(1999)
EMBO J
, vol.18
, pp. 6146-6154
-
-
Gebauer, F.1
Corona, D.F.2
Preiss, T.3
Becker, P.B.4
Hentze, M.W.5
-
30
-
-
0034672093
-
The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
-
Le Hir H, Izaurralde E, Maquat LE, Moore MJ. The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J 2000; 19:6860-9.
-
(2000)
EMBO J
, vol.19
, pp. 6860-6869
-
-
Le Hir, H.1
Izaurralde, E.2
Maquat, L.E.3
Moore, M.J.4
-
31
-
-
33846505055
-
A nucleo-cytoplasmic SR protein functions in viral IRES-mediated translation initiation
-
Bedard KM, Daijogo S, Semler BL. A nucleo-cytoplasmic SR protein functions in viral IRES-mediated translation initiation. EMBO J 2007; 26:459-67.
-
(2007)
EMBO J
, vol.26
, pp. 459-467
-
-
Bedard, K.M.1
Daijogo, S.2
Semler, B.L.3
-
32
-
-
34548535363
-
Cap-independent translation is required for starvation-induced differentiation in yeast
-
Gilbert WV, Zhou K, Butler TK, Doudna JA. Cap-independent translation is required for starvation-induced differentiation in yeast. Science 2007; 317:1224-7.
-
(2007)
Science
, vol.317
, pp. 1224-1227
-
-
Gilbert, W.V.1
Zhou, K.2
Butler, T.K.3
Doudna, J.A.4
-
33
-
-
7044227587
-
Stop codon-mediated suppression of splicing is a novel nuclear scanning mechanism not affected by elements of protein synthesis and NMD
-
Wachtel C, Li B, Sperling J, Sperling R. Stop codon-mediated suppression of splicing is a novel nuclear scanning mechanism not affected by elements of protein synthesis and NMD. RNA 2004; 10:1740-50.
-
(2004)
RNA
, vol.10
, pp. 1740-1750
-
-
Wachtel, C.1
Li, B.2
Sperling, J.3
Sperling, R.4
-
34
-
-
0035103259
-
The Drosophila alcohol dehydrogenase gene may have evolved independently of the functionally homologous medfly, olive fly and flesh fly genes
-
Brogna S, Benos PV, Gasperi G, Savakis C. The Drosophila alcohol dehydrogenase gene may have evolved independently of the functionally homologous medfly, olive fly and flesh fly genes. Mol Biol Evol 2001; 18:322-9.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 322-329
-
-
Brogna, S.1
Benos, P.V.2
Gasperi, G.3
Savakis, C.4
-
35
-
-
0029909458
-
An efficient DDAB-mediated transfection of Drosophila S2 cells
-
Han K. An efficient DDAB-mediated transfection of Drosophila S2 cells. Nucleic Acids Res 1996; 24:4362-3.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 4362-4363
-
-
Han, K.1
-
36
-
-
0027203937
-
Simplified high throughput protocol for Northern hybridization
-
Yang H, McLeese J, Weisbart M, Dionne JL, Lemaire I, Aubin RA. Simplified high throughput protocol for Northern hybridization. Nucleic Acid Research 1993; 21:3337-8.
-
(1993)
Nucleic Acid Research
, vol.21
, pp. 3337-3338
-
-
Yang, H.1
McLeese, J.2
Weisbart, M.3
Dionne, J.L.4
Lemaire, I.5
Aubin, R.A.6
-
37
-
-
0002440928
-
Molecular cloning
-
Cold Spring Harbour, New York: Cold Spring Harbour Laboratory Press
-
Sambrook J, Fritsch EF, Maniatis T. Molecular cloning. A Laboratory Manual. Cold Spring Harbour, New York: Cold Spring Harbour Laboratory Press 1989.
-
(1989)
A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
39
-
-
0003455528
-
-
Cold Spring Harbour, New York: Cold Spring Harbour Laboratory Press
-
Ashburner M. Drosophila: a laboratory handbook. Cold Spring Harbour, New York: Cold Spring Harbour Laboratory Press 1989.
-
(1989)
Drosophila: A laboratory handbook
-
-
Ashburner, M.1
|