Oat anther culture and use of DH-lines for genetic mapping

Methods in Molecular Biology

Volumn 1536, Issue , 2017, Pages 71-93

  Kiviharju, Elina ^a   Moisander, Sirpa ^a   Tanhuanpää, Pirjo ^a  

^a FINNISH FOREST RESEARCH INSTITUTE   (Finland)

Author keywords

Anther culture; Avena sativa; DH; DNA markers; Haploid; Linkage mapping; Microspore; Oats; Regeneration

Indexed keywords

ANTHER CULTURE; DNA MARKER; DOUBLED HAPLOID LINE; GENE MAPPING; GENETIC LINKAGE; HOMOZYGOSITY; LINKAGE ANALYSIS; NONHUMAN; OAT; PLANT BREEDING; PROGENY; QUANTITATIVE TRAIT LOCUS; AVENA; CHROMOSOMAL MAPPING; CULTURE MEDIUM; FLOWER; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; HAPLOIDY;

AVENA; CHROMOSOME MAPPING; CULTURE MEDIA; FLOWERS; GENETIC MARKERS; HAPLOIDY;

EID: 85011698035     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-6682-0_6     Document Type: Chapter

References (49)

1. Forster BP, Thomas WTB (2005) Doubled haploids in genetics and plant breeding. Plant Breed Rev 25:57-88
2. Rines HW (1983) Oat anther culture: genotype effect on callus initiation and the production of a haploid plant. Crop Sci 23:268-272
3. Kiviharju E, Puolimatka M, Pehu E (1997) Regeneration of anther-derived plants of Avena sterilis L. Plant Cell Tiss Org Cult 48:147-152
4. Kiviharju E, Puolimatka M, Saastamoinen M, Hovinen S, Pehu E (1998) The effect of genotype on anther culture response of cultivated and wild oats. Agric Food Sci Finl 7:409-422
5. Kiviharju E, Pehu E (1998) The effect of cold and heat pretreatments on anther culture response of Avena sativa and A. sterilis. Plant Cell Tiss Org Cult 54:97-104
6. Kiviharju E, Tauriainen A (1999) 2,4-Dichlorophenoxyacetic acid and kinetin in anther culture of cultivated and wild oats and their interspecific crosses: plant regeneration from Avena sativa L. Plant Cell Rep 18:582-588
7. Kiviharju E, Laurila J, Lehtonen M, Tanhuanpää P, Manninen O (2004) Anther culture properties of oat × wild red oat progenies and a search for RAPD markers associated with anther culture ability. Agric Food Sci 13:151-162
8. Tuvesson S, Dayteg C, Hagberg P, Manninen O, Tanhuanpää P, Tenhola-Roininen T, Kiviharju E, Weyen J, Förster J, Schondelmaier J, Lafferty J, Marn M, Fledck A (2007) Molecular markers and doubled haploids in European plant breeding programmes. Euphytica 158(3):305-312
9. Slusarkiewicz-Jarzina A, Ponitka A (2007) The effect of physical medium state on anther culture response in polish cultivated oat (Avena sativa L.). Acta Biol Cracov Ser Bot 49:27-31
10. Ponitka A, Slusarkiewicz-Jarzina A (2009) A regeneration of oat androgenic plants in relation to induction media and culture conditions of embryo-like structures. Acta Soc Bot Pol 78(3):209-213
11. Rines HW, Riera-Lizarazu O, Nunez VM, Davis DW, Phillips RL (1997) Oat haploids from anther culture and from wide hybridizations. In: Jain SM, Sopory SK, Veilleux RE (eds) In vitro haploid production in higher plants, vol 4. Kluwer, Dordrecht, pp 205-221
12. Sun CS, Lu T-G, Söndahl MR (1991) Anther culture of naked oat and the establishment of its haploid suspension cell. Acta Bot Sin 33:417-420
13. Sidhu PK, Davies PA (2009) Regeneration of fertile green plants from oat isolated micro-spore culture. Plant Cell Rep 28:571-577
14. Ferrie AMR, Irmen KI, Beattie AD, Rossnagel BG (2014) Isolated microspore culture of oat (Avena sativa L.) for the production of doubled haploids: effect of pre-culture and post-­culture conditions. Plant Cell Tiss Org Cult 116(1):89-96
15. Rines HW (2003) Oat haploids from wide hybridization. In: Maluszynski M, Kasha KJ, Forster BP, Szarejko I (eds) Doubled haploid production in crop plants. Kluwer, Dordrecht, pp 155-159
16. Sidhu PK, Howes NK, Aung T, Zwer PK, Davies PA (2006) Factors affecting oat haploid production following oat × maize hybridization. Plant Breed 125:243-247
17. Riera-Lizarazu O, Rines H, Phillips RL (1996) Cytological and molecular characterization of oat × maize partial hybrids. Theor Appl Genet 93(1-2):123-135
18. Kiviharju E, Puolimatka M, Saastamoinen M, Pehu E (2000) Extension of anther culture to several genotypes of cultivated oats. Plant Cell Rep 19:674-679
19. Kiviharju E, Moisander S, Laurila J (2005) Improved green plant regeneration rates from oat anther culture and the agronomic performance of some DH lines. Plant Cell Tiss Org Cult 81:1-9
20. Kiviharju EM (2009) Anther culture derived doubled haploids in oat. In: Forster BP, Jain SM, Touraev A (eds) Advances in Haploid Production in Higher Plants. Springer, Berlin, pp 171-178
21. Tanhuanpää P, Kalendar R, Schulman A, Kiviharju E (2008) The first doubled haploid linkage map for cultivated oat. Genome 51:560-569
22. Tanhuanpää P, Manninen O, Beattie A, Eckstein P, Scoles G, Rossnagel B, Kiviharju E (2012) An updated doubled haploid oat linkage map and QTL mapping of agronomic and grain quality traits from Canadian field trials. Genome 55:289-301
23. Tanhuanpää P, Manninen O, Kiviharju E (2010) QTLs for important breeding characteristics in the doubled haploid oat progeny. Genome 53:482-493
24. Ouyang JW, Jia SE, Zhang C, Chen X, Feng G (1989) A new synthetic medium (W14) for wheat anther culture. Annual report 1987-1988. Institute of Genetics Academia Sinica, Beijing, pp 91-92
25. Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue culture. Physiol Plant 15:437-497
26. Dunwell JM (1985) Anther and ovary culture. In: Bright SWJ, Jones MKG (eds) Cereal tissue and cell culture. Nijhoff/Junk, Dordrecht, The Netherlands, pp 1-44
27. Immonen S, Tauriainen A, Manninen O (1999) Assesment of green regenerants from rye and triticale anther cultures. In: Clement C, Pacini E, Audran JC (eds) Anther and pollen: from biology to biotechnology. Springer, Berlin, pp 237-245
28. Bennett HD, Smith JB, Heslop-Harrison JS (1982) Nuclear DNA amount in angiosperms. Philos Trans R Soc Lond B 216:179-199
29. Poulsen GB, Kahl G, Weising K (1993) Abundance and polymorphism of simple repetitive DNA sequences in Brassica napus L. Theor Appl Genet 85:994-1000
30. Li CD, Rossnagel BG, Scoles GJ (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars. Theor Appl Genet 101:1259-1268
31. Holland JB, Helland SJ, Shaporova N et al (2001) Polymorphism of PCR-based markers targeting exons, introns, promoter regions, and SSRs in maize and introns and repeat sequences in oat. Genome 44:1065-1076
32. Pal N, Sandhu JS, Domier LL et al (2002) Development and characterization of microsatellite and RFLP-derived PCR markers in oat. Crop Sci 42:912-918
33. Jannink J-L, Gardner SW (2005) Expanding the pool of PCR-based markers for oat. Crop Sci 45:2383-2387
34. Becher R (2007) EST-derived microsatellites as a rich source of molecular markers for oats. Plant Breed 126:274-278
35. Becker J, Heun M (1995) Barley microsatellites: allele variation and mapping. Plant Mol Biol 27:835-845
36. Liu ZW, Biyashev RM, Saghai Maroof MA (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theor Appl Genet 93:869-876
37. Ramsay L, Macaulay M, Degli Ivanissevich S et al (2000) A simple sequence repeat-based linkage map of barley. Genetics 156:1997-2005
38. Hackauf B, Wehling P (2002) Identification of microsatellite polymorphisms in an expressed portion of the rye genome. Plant Breed 121:17-25
39. Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183
40. Kalendar R, Grob T, Regina M et al (1999) IRAP and REMAP: two new retrotransposon-­based DNA fingerprinting techniques. Theor Appl Genet 98:704-711
41. Schulman AH, Gupta PK, Varshney RK (2004) Organization of retrotransposons and micro-satellites in cereal genomes. In: Gupta PK, Varshney RK (eds) Cereal genomics. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 83-118
42. Kalendar R, Schulman AH (2006) IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nat Protoc 1:2478-2484
43. Vos P, Hogers R, Bleeker M et al (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
44. Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103:455-461
45. Budak H, Shearman RC, Parmaksiz I et al (2004) Molecular characterization of Buffalograss germplasm using sequence-related amplified polymorphism markers. Theor Appl Genet 108:328-334
46. Tinker NA, Kilian A, Wight CP et al (2009) New DArT markers for oat provide enhanced map coverage and global germplasm characterization. BMC Genomics 10:39
47. Tanhuanpää P, Kalendar R, Laurila J, Manninen O, Schulman AH, Kiviharju E (2006) Generation of SNP markers for short straw in oat (Avena sativa L.). Genome 49:282-287
48. Van Ooijen JW, Voorrips RE (2001) Joinmap® 3.0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands
49. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12:172-175