An updated doubled haploid oat linkage map and QTL mapping of agronomic and grain quality traits from Canadian field trials

Genome

Volumn 55, Issue 4, 2012, Pages 289-301

  Tanhuanpää, Pirjo ^a   Manninen, Outi ^a   Beattie, Aaron ^b   Eckstein, Peter ^b   Scoles, Graham ^b   Rossnagel, Brian ^b   Kiviharju, Elina ^a  

^a FINNISH FOREST RESEARCH INSTITUTE   (Finland)

^b UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

Avena sativa; DArT; DNA markers; Doubled haploid; QTL

Indexed keywords

BETA GLUCAN; MICROSATELLITE DNA; VEGETABLE OIL; VEGETABLE PROTEIN;

ARTICLE; CANADA; CHEMISTRY; CHROMOSOME MAP; CROSS BREEDING; GENETIC LINKAGE; GENETICS; HAPLOIDY; OAT; PLANT CHROMOSOME; QUANTITATIVE TRAIT LOCUS;

AVENA SATIVA; BETA-GLUCANS; CANADA; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROSSES, GENETIC; GENETIC LINKAGE; HAPLOIDY; MICROSATELLITE REPEATS; PLANT OILS; PLANT PROTEINS; QUANTITATIVE TRAIT LOCI;

AVENA SATIVA;

EID: 84859387303     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g2012-017     Document Type: Article

References (27)

1. Becher R. 2007. EST-derived microsatellites as a rich source of molecular markers for oats. Plant Breed. 126 (3): 274-278. 10.1111/j.1439-0523.2007. 01330.x (Pubitemid 46718887)
2. Beer, S.C., Siripoonwiwat, W., O'Donoughue, L.S., Souza, E., Matthews, D., and Sorrells, M.E. 1997. Associations between molecular markers and quantitative traits in an oat germplasm pool: can we infer linkages? J. Agric. Genomics, 3. Available from http://wheat.pw.usda.gov/jag/papers97/paper197/ indexp197.html [accessed 16 May 2011].
3. De Koeyer D.L. Tinker N.A. Wight C.P. Deyl J. Burrows V.D. O'Donoughue L.S. et al. 2004. A molecular linkage map with associated QTLs from a hulless × covered spring oat population. Theor. Appl. Genet. 108 (7): 1285-1298. 10.1007/s00122-003-1556-x 14767596 (Pubitemid 38630171)
4. De Koyer D.L. Phillips R.L. Stuthman D.D. 2001. Allelic shifts and quantitative trait loci in a recurrent selection population of oat. Crop Sci. 41 (4): 1228-1234. 10.2135/cropsci2001.4141228x (Pubitemid 32773822)
5. Groh S. Kianian S.F. Phillips R.L. Rines H.W. Stuthman D.D. Wesenberg D.M. Fulcher R.G. 2001. Analysis of factors influencing milling yield and their association to other traits by QTL analysis in two hexaploid oat populations. Theor. Appl. Genet. 103 (1): 9-18. 10.1007/s001220100579 (Pubitemid 32686301)
6. Holland J.B. Moser H.S. O'Donoughue L.S. Lee M. 1997. QTLs and epistasis associated with vernalization responses in oat. Crop Sci. 37 (4): 1306-1316. 10.2135/cropsci1997.0011183X003700040047x (Pubitemid 27369972)
7. Holland J.B. Portyanko V.A. Hoffman D.L. Lee M. 2002. Genomic regions controlling vernalization and photoperiod responses in oat. Theor. Appl. Genet. 105 (1): 113-126. 10.1007/s00122-001-0845-5 12582569 (Pubitemid 36059367)
8. Jaccoud D. Peng K. Feinstein D. Kilian A. 2001. Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res. 29 (4): e25. 10.1093/nar/29.4.e25 11160945
9. Jørgensen K. Aastrup S. 1988. Quantification of high molecular weight (1→3)(1→4)-β-d-glucan using Calcofluor complex formation and flow injection analysis. II. Determination of total β-glucan content of barley and malt. Carlsberg Res. Commun. 53 (5): 287-296. 10.1007/BF02904434
10. Kianian S.F. Egli M.A. Phillips R.L. Rines H.W. Somers D.A. Gengenbach B.G. et al. 1999. Association of a major groat oil content QTL and an acetyl-CoA carboxylase gene in oat. Theor. Appl. Genet. 98 (6-7): 884-894. 10.1007/s001220051147 (Pubitemid 29245213)
11. Kianian S.F. Phillips R.L. Rines H.W. Fulcher R.G. Webster F.H. Stuthman D.D. 2000. Quantitative trait loci influencing β-glucan content in oat (Avena sativa, 2 n = 6 x = 42). Theor. Appl. Genet. 101 (7): 1039-1048. 10.1007/s001220051578
12. Kosambi D.D. 1944. The estimation of map distance from recombination values. Ann. Eugen. 12 (1): 172-175. 10.1111/j.1469-1809.1943.tb02321.x
13. McCleary B.V. Codd R. 1991. Measurement of (1→3)(1→4)-β-d- glucan in barley and oats: a streamlined enzymic procedure. J. Sci. Food Agric. 55 (2): 303-312. 10.1002/jsfa.2740550215
14. O'Donoughue L.S. Kianian S.F. Rayapati P.J. Penner G.A. Sorrells M.E. Tanksley S.D. et al. 1995. A molecular linkage map of cultivated oat. Genome, 38 (2): 368-380. 10.1139/g95-048 18470176
15. Orr W. Molnar S.J. 2008. Development of PCR-based SCAR and CAPS markers linked to β-glucan and protein content QTL regions in oat. Genome, 51 (6): 421-425. 10.1139/G08-026 18521120 (Pubitemid 351879690)
16. Paterson A.H. Damon S. Hewitt J.D. Zamir D. Rabinowitch H.D. Lincoln S.E. et al. 1991. Mendelian factors underlying quantitative traits in tomato: comparison across species, generations, and environments. Genetics, 127 (1): 181-197. 1673106
17. Rines, H.W., Molnar, S.J., Tinker, N.A., and Phillips, R.L. 2006. Oat. In Genome mapping and molecular breeding in plants, cereals and millets. Vol.1. Edited by C. Kole. Springer-Verlag, Berlin. pp.211-242.
18. Siripoonwiwat, W., O'Donoughue, L.S., Wesenberg, D., Hoffman, D.L., Barbosa-Neto, J.F., and Sorrells, M.E. 1996. Chromosomal regions associated with quantitative traits in oat. J. Agric. Genomics, 2. Available from http://wheat.pw.usda.gov/jag/papers96/paper396/indexp396.html [accessed 16 May 2011].
19. TanhuanpàP. Kalendar R. Schulman A.H. Kiviharju E. 2008. The first doubled haploid linkage map for cultivated oat. Genome, 51 (8): 560 - 569. 10.1139/G08-040 18650946
20. TanhuanpàP. Manninen O. Kiviharju E. 2010. QTLs for important breeding characteristics in the doubled haploid oat progeny. Genome, 53 (6): 482 - 493. 10.1139/G10-022 20555437
21. Tinker, N.A., and Mather, D.E. 1995. MQTL: software for simplified composite interval mapping of QTL in multiple environments. J. Agric. Genomics, 1. Available from http://wheat.pw.usda.gov/jag/papers95/paper295/indexp295.html [accessed 16 May 2011].
22. Tinker N.A. Kilian A. Wight C.P. Heller-Uszynska K. Wenzl P. Rines H.W. et al. 2009. New DArT markers for oat provide enhanced map coverage and global germplasm characterization. BMC Genomics, 10 (1): 39. 10.1186/1471-2164-10-39 19159465
23. Van Ooijen, J.W., and Voorrips, R.E. 2001. Joinmap 3.0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, the Netherlands.
24. Voorrips R.E. 2002. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93 (1): 77-78. 10.1093/jhered/93.1.77 12011185 (Pubitemid 34496540)
25. Wight C.P. Tinker N.A. Kianian S.F. Sorrells M.E. O'Donoughue L.S. Hoffman D.L. et al. 2003. A molecular marker map in 'Kanota' × 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework. Genome, 46 (1): 28-47. 10.1139/g02-099 12669794 (Pubitemid 36453211)
26. Zhu S. Rossnagel B.G. Kaeppler H.F. 2004. Genetic analysis of quantitative trait loci for groat protein and oil content in oat. Crop Sci. 44 (1): 254-260. 10.2135/cropsci2004.0254 (Pubitemid 38051630)
27. Zhu C. Gore M. Buckler E.S. Yu J. 2008. Status and prospects of association mapping in plants. Plant Genome, 1 (1): 5-20. 10.3835/ plantgenome2008.02.0089