메뉴 건너뛰기




Volumn 144, Issue 3, 2017, Pages 409-418

The ectocarpus IMMEDIATE UPRIGHT gene encodes a member of a novel family of cysteine-rich proteins with an unusual distribution across the eukaryotes

Author keywords

Brown algae; Ectocarpus; Horizontal gene transfer; Initial cell division; Life cycle; Virus

Indexed keywords

ALGAL PROTEIN; IMMEDIATE UPRIGHT PROTEIN; UNCLASSIFIED DRUG; VIRAL PROTEIN; CYSTEINE;

EID: 85011599970     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.141523     Document Type: Article
Times cited : (31)

References (55)
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol. 11, R106.
    • (2010) Genome Biol , vol.11 , pp. 106
    • Anders, S.1    Huber, W.2
  • 3
    • 84907143655 scopus 로고    scopus 로고
    • HTSeq—A Python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P. T. and Huber, W. (2014). HTSeq—A Python framework to work with high-throughput sequencing data. BioRxiv doi:10.1101/002824.
    • (2014) Biorxiv
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 4
    • 84864805609 scopus 로고    scopus 로고
    • AP2-type transcription factors determine stem cell identity in the moss Physcomitrella patens
    • Aoyama, T., Hiwatashi, Y., Shigyo, M., Kofuji, R., Kubo, M., Ito, M. and Hasebe, M. (2012). AP2-type transcription factors determine stem cell identity in the moss Physcomitrella patens. Development 139, 3120-3129.
    • (2012) Development , vol.139 , pp. 3120-3129
    • Aoyama, T.1    Hiwatashi, Y.2    Shigyo, M.3    Kofuji, R.4    Kubo, M.5    Ito, M.6    Hasebe, M.7
  • 8
    • 33646290385 scopus 로고
    • On antithetic as distinct from homologous alternation of generations in plants
    • Bower, F. O. (1890). On antithetic as distinct from homologous alternation of generations in plants. Ann. Bot. 4, 347-370.
    • (1890) Ann. Bot , vol.4 , pp. 347-370
    • Bower, F.O.1
  • 10
    • 0035859929 scopus 로고    scopus 로고
    • Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems
    • Caplen, N. J., Parrish, S., Imani, F., Fire, A. and Morgan, R. A. (2001). Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems. Proc. Natl. Acad. Sci. USA 98, 9742-9747.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9742-9747
    • Caplen, N.J.1    Parrish, S.2    Imani, F.3    Fire, A.4    Morgan, R.A.5
  • 11
    • 51349150475 scopus 로고
    • Ueber die verschiedenen Formen und die Bedeutung des Generationwechsels der Pflanzen
    • Celakovsky, L. (1874). Ueber die verschiedenen Formen und die Bedeutung des Generationwechsels der Pflanzen. Sitzungsber. K. Boehmischen Ges. Wiss. Prague 2, 21-61.
    • (1874) Sitzungsber. K. Boehmischen Ges. Wiss. Prague , vol.2 , pp. 21-61
    • Celakovsky, L.1
  • 14
    • 84990935512 scopus 로고    scopus 로고
    • Emergence of Ectocarpus as a model system to study the evolution of complex multicellularity in the brown algae
    • I. Ruiz-Trillo and A. M. Nedelcu), Dordrecht: Springer
    • Cock, J. M., Godfroy, O., Strittmatter, M., Scornet, D., Uji, T., Farnham, G., Peters, A. F. and Coelho, S. M. (2015). Emergence of Ectocarpus as a model system to study the evolution of complex multicellularity in the brown algae. In Evolutionary Transitions to Multicellular Life (ed. I. Ruiz-Trillo and A. M. Nedelcu), pp. 153-162. Dordrecht: Springer.
    • (2015) In Evolutionary Transitions to Multicellular Life , pp. 153-162
    • Cock, J.M.1    Godfroy, O.2    Strittmatter, M.3    Scornet, D.4    Uji, T.5    Farnham, G.6    Peters, A.F.7    Coelho, S.M.8
  • 15
    • 36849024982 scopus 로고    scopus 로고
    • Complex life cycles of multicellular eukaryotes: New approaches based on the use of model organisms
    • Coelho, S. M., Peters, A. F., Charrier, B., Roze, D., Destombe, C., Valero, M. and Cock, J. M. (2007). Complex life cycles of multicellular eukaryotes: new approaches based on the use of model organisms. Gene 406, 152-170.
    • (2007) Gene , vol.406 , pp. 152-170
    • Coelho, S.M.1    Peters, A.F.2    Charrier, B.3    Roze, D.4    Destombe, C.5    Valero, M.6    Cock, J.M.7
  • 16
    • 79960972542 scopus 로고    scopus 로고
    • OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus
    • Coelho, S. M., Godfroy, O., Arun, A., Le Corguillé, G., Peters, A. F. and Cock, J. M. (2011). OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus. Proc. Natl. Acad. Sci. USA 108, 11518-11523.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 11518-11523
    • Coelho, S.M.1    Godfroy, O.2    Arun, A.3    Le Corguillé, G.4    Peters, A.F.5    Cock, J.M.6
  • 21
    • 0035881839 scopus 로고    scopus 로고
    • The complete DNA sequence of the Ectocarpus siliculosus virus EsV-1 genome
    • Delaroque, N., Müller, D. G., Bothe, G., Pohl, T., Knippers, R. and Boland, W. (2001). The complete DNA sequence of the Ectocarpus siliculosus virus EsV-1 genome. Virology 287, 112-132.
    • (2001) Virology , vol.287 , pp. 112-132
    • Delaroque, N.1    Müller, D.G.2    Bothe, G.3    Pohl, T.4    Knippers, R.5    Boland, W.6
  • 22
    • 58149295496 scopus 로고    scopus 로고
    • Body building on land: Morphological evolution of land plants
    • Dolan, L. (2009). Body building on land: morphological evolution of land plants. Curr. Opin. Plant Biol. 12, 4-8.
    • (2009) Curr. Opin. Plant Biol , vol.12 , pp. 4-8
    • Dolan, L.1
  • 23
    • 84884988020 scopus 로고    scopus 로고
    • Gene silencing in Fucus embryos: Developmental consequences of RNAimediated cytoskeletal disruption
    • Farnham, G., Strittmatter, M., Coelho, S. M., Cock, J. M. and Brownlee, C. (2013). Gene silencing in Fucus embryos: developmental consequences of RNAimediated cytoskeletal disruption. J. Phycol. 49, 819-829.
    • (2013) J. Phycol , vol.49 , pp. 819-829
    • Farnham, G.1    Strittmatter, M.2    Coelho, S.M.3    Cock, J.M.4    Brownlee, C.5
  • 26
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol
    • Gouy, M., Guindon, S. and Gascuel, O. (2010). SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 27, 221-224.
    • (2010) Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 27
    • 33646554467 scopus 로고    scopus 로고
    • Sexual conflict and the alternation of haploid and diploid generations
    • Haig, D. and Wilczek, A. (2006). Sexual conflict and the alternation of haploid and diploid generations. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361, 335-343.
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.361 , pp. 335-343
    • Haig, D.1    Wilczek, A.2
  • 29
    • 77954304698 scopus 로고    scopus 로고
    • E-RNAi: A web application for the multi-species design of RNAi reagents–2010 update
    • Horn, T. and Boutros, M. (2010). E-RNAi: a web application for the multi-species design of RNAi reagents–2010 update. Nucleic Acids Res. 38, W332-W339.
    • (2010) Nucleic Acids Res , vol.38 , pp. W332-W339
    • Horn, T.1    Boutros, M.2
  • 30
    • 0042428775 scopus 로고    scopus 로고
    • Schizocladia ischiensis: A new filamentous marine chromophyte belonging to a new class, Schizocladiophyceae
    • Kawai, H., Maeba, S., Sasaki, H., Okuda, K. and Henry, E. C. (2003). Schizocladia ischiensis: a new filamentous marine chromophyte belonging to a new class, Schizocladiophyceae. Protist 154, 211-228.
    • (2003) Protist , vol.154 , pp. 211-228
    • Kawai, H.1    Maeba, S.2    Sasaki, H.3    Okuda, K.4    Henry, E.C.5
  • 31
    • 84944736735 scopus 로고    scopus 로고
    • Molecular phylogeny of two unusual brown algae, Phaeostrophion irregulare and Platysiphon glacialis, proposal of the Stschapoviales ord. Nov. and Platysiphonaceae fam. nov., and a re-examination of divergence times for brown algal orders
    • Kawai, H., Hanyuda, T., Draisma, S. G. A., Wilce, R. T. and Andersen, R. A. (2015). Molecular phylogeny of two unusual brown algae, Phaeostrophion irregulare and Platysiphon glacialis, proposal of the Stschapoviales ord. nov. and Platysiphonaceae fam. nov., and a re-examination of divergence times for brown algal orders. J. Phycol. 51, 918-928.
    • (2015) J. Phycol , vol.51 , pp. 918-928
    • Kawai, H.1    Hanyuda, T.2    Draisma, S.G.A.3    Wilce, R.T.4    Andersen, R.A.5
  • 32
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R. and Salzberg, S. L. (2013). TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36.
    • (2013) Genome Biol , vol.14 , pp. 36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 33
    • 84899129604 scopus 로고    scopus 로고
    • Co-option of a photoperiodic growth-phase transition system during land plant evolution
    • Kubota, A., Kita, S., Ishizaki, K., Nishihama, R., Yamato, K. T. and Kohchi, T. (2014). Co-option of a photoperiodic growth-phase transition system during land plant evolution. Nat. Commun. 5, 3668.
    • (2014) Nat. Commun , vol.5 , pp. 3668
    • Kubota, A.1    Kita, S.2    Ishizaki, K.3    Nishihama, R.4    Yamato, K.T.5    Kohchi, T.6
  • 36
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M. I., Huber, W. and Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550.
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 37
    • 34250174230 scopus 로고    scopus 로고
    • An ancient mechanism controls the development of cells with a rooting function in land plants
    • Menand, B., Yi, K., Jouannic, S., Hoffmann, L., Ryan, E., Linstead, P., Schaefer, D. G. and Dolan, L. (2007). An ancient mechanism controls the development of cells with a rooting function in land plants. Science 316, 1477-1480.
    • (2007) Science , vol.316 , pp. 1477-1480
    • Menand, B.1    Yi, K.2    Jouannic, S.3    Hoffmann, L.4    Ryan, E.5    Linstead, P.6    Schaefer, D.G.7    Dolan, L.8
  • 39
    • 71249116114 scopus 로고    scopus 로고
    • The evolution of the land plant life cycle
    • Niklas, K. J. and Kutschera, U. (2010). The evolution of the land plant life cycle. New Phytol. 185, 27-41.
    • (2010) New Phytol , vol.185 , pp. 27-41
    • Niklas, K.J.1    Kutschera, U.2
  • 41
    • 44449150247 scopus 로고    scopus 로고
    • Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus
    • Peters, A. F., Scornet, D., Ratin, M., Charrier, B., Monnier, A., Merrien, Y., Corre, E., Coelho, S. M. and Cock, J. M. (2008). Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus. Development 135, 1503-1512.
    • (2008) Development , vol.135 , pp. 1503-1512
    • Peters, A.F.1    Scornet, D.2    Ratin, M.3    Charrier, B.4    Monnier, A.5    Merrien, Y.6    Corre, E.7    Coelho, S.M.8    Cock, J.M.9
  • 42
    • 84855696745 scopus 로고    scopus 로고
    • Morphological evolution in land plants: New designs with old genes
    • Pires, N. D. and Dolan, L. (2012). Morphological evolution in land plants: new designs with old genes. Philos. Trans. R. Soc. Lond. B Biol. Sci. 367, 508-518.
    • (2012) Philos. Trans. R. Soc. Lond. B Biol. Sci , vol.367 , pp. 508-518
    • Pires, N.D.1    Dolan, L.2
  • 43
    • 56849112458 scopus 로고    scopus 로고
    • Phylogeny and evolution of charophytic algae and land plants
    • Qiu, Y.-L. (2008). Phylogeny and evolution of charophytic algae and land plants. J. Syst. Evol. 46, 287-306.
    • (2008) J. Syst. Evol , vol.46 , pp. 287-306
    • Qiu, Y.-L.1
  • 47
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview–extensible visualization of microarray data
    • Saldanha, A. J. (2004). Java Treeview–extensible visualization of microarray data. Bioinformatics 20, 3246-3248.
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 48
    • 13444262397 scopus 로고    scopus 로고
    • KNOX homeobox genes potentially have similar function in both diploid unicellular and multicellular meristems, but not in haploid meristems
    • Sano, R., Juarez, C. M., Hass, B., Sakakibara, K., Ito, M., Banks, J. A. and Hasebe, M. (2005). KNOX homeobox genes potentially have similar function in both diploid unicellular and multicellular meristems, but not in haploid meristems. Evol. Dev. 7, 69-78.
    • (2005) Evol. Dev , vol.7 , pp. 69-78
    • Sano, R.1    Juarez, C.M.2    Hass, B.3    Sakakibara, K.4    Ito, M.5    Banks, J.A.6    Hasebe, M.7
  • 49
    • 79952750087 scopus 로고    scopus 로고
    • Bryophyte diversity and evolution: Windows into the early evolution of land plants
    • Shaw, A. J., Szovenyi, P. and Shaw, B. (2011). Bryophyte diversity and evolution: windows into the early evolution of land plants. Am. J. Bot. 98, 352-369.
    • (2011) Am. J. Bot , vol.98 , pp. 352-369
    • Shaw, A.J.1    Szovenyi, P.2    Shaw, B.3
  • 50
    • 77953324852 scopus 로고    scopus 로고
    • A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the “brown algal crown radiation”
    • Silberfeld, T., Leigh, J. W., Verbruggen, H., Cruaud, C., de Reviers, B. and Rousseau, F. (2010). A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): investigating the evolutionary nature of the “brown algal crown radiation”. Mol. Phylogenet. Evol. 56, 659-674.
    • (2010) Mol. Phylogenet. Evol , vol.56 , pp. 659-674
    • Silberfeld, T.1    Leigh, J.W.2    Verbruggen, H.3    Cruaud, C.4    de Reviers, B.5    Rousseau, F.6
  • 51
    • 85032070461 scopus 로고
    • UTEX-The culture collection of algae at the University of Texas at Austin 1993 list of cultures
    • Starr, R. C. and Zeikus, J. A. (1993). UTEX-The culture collection of algae at the University of Texas at Austin 1993 list of cultures. J. Phycol. 29 Suppl., 1-106.
    • (1993) J. Phycol. 29 Suppl. , pp. 1-106
    • Starr, R.C.1    Zeikus, J.A.2
  • 53
    • 78650506885 scopus 로고    scopus 로고
    • Generation-biased gene expression in a bryophyte model system
    • Szovenyi, P., Rensing, S. A., Lang, D., Wray, G. A. and Shaw, A. J. (2011). Generation-biased gene expression in a bryophyte model system. Mol. Biol. Evol. 28, 803-812.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 803-812
    • Szovenyi, P.1    Rensing, S.A.2    Lang, D.3    Wray, G.A.4    Shaw, A.J.5
  • 54
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z. (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.