메뉴 건너뛰기




Volumn 28, Issue 1, 2011, Pages 803-812

Generation-biased gene expression in a bryophyte model system

Author keywords

early land plant evolution; Funaria hygrometrica; gametophyte; gene expression; high throughput sequencing; sporophyte

Indexed keywords

ANGIOSPERM; ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; EVOLUTIONARY ADAPTATION; EVOLUTIONARY DEVELOPMENTAL BIOLOGY; GAMETOPHYTE; GENE EXPRESSION; GENERATION BIASED GENE EXPRESSION; GENETIC VARIABILITY; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; MORPHOLOGICAL TRAIT; MOSS; NONHUMAN; PLANT EVOLUTION; PLANT GENOME; REGULATOR GENE; SPECIES COMPARISON; TERRESTRIAL SPECIES;

EID: 78650506885     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq254     Document Type: Article
Times cited : (40)

References (45)
  • 1
    • 1642380225 scopus 로고    scopus 로고
    • The role of GRAS proteins in plant signal transduction and development
    • Bolle C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218:683-692.
    • (2004) Planta , vol.218 , pp. 683-692
    • Bolle, C.1
  • 2
    • 33846573830 scopus 로고    scopus 로고
    • Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
    • Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR. 2006. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics. 7:327.
    • (2006) BMC Genomics , vol.7 , pp. 327
    • Campbell, M.A.1    Haas, B.J.2    Hamilton, J.P.3    Mount, S.M.4    Buell, C.R.5
  • 3
    • 33644779837 scopus 로고    scopus 로고
    • GO-Diff: Mining functional differentiation between EST-based transcriptomes
    • Chen Z, Wang W, Ling XB, Liu JJ, Chen L. 2006. GO-Diff: mining functional differentiation between EST-based transcriptomes. BMC Bioinformatics. 7:72.
    • (2006) BMC Bioinformatics , vol.7 , pp. 72
    • Chen, Z.1    Wang, W.2    Ling, X.B.3    Liu, J.J.4    Chen, L.5
  • 4
    • 58149295496 scopus 로고    scopus 로고
    • Body building on land-morphological evolution of land plants
    • Dolan L. 2009. Body building on land-morphological evolution of land plants. Curr Opin Plant Biol. 12:4-8.
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 4-8
    • Dolan, L.1
  • 5
    • 58549098576 scopus 로고    scopus 로고
    • The earliest land plants
    • Gensel PG. 2008. The earliest land plants. Annu Rev Ecol Syst. 39:459-477.
    • (2008) Annu Rev Ecol Syst , vol.39 , pp. 459-477
    • Gensel, P.G.1
  • 7
    • 57749118845 scopus 로고    scopus 로고
    • Arabidopsis thaliana homeobox gene 1 establishes the basal boundaries of shoot organs and controls stem growth
    • Gomez-Mena C, Sablowski R. 2008. Arabidopsis thaliana homeobox gene 1 establishes the basal boundaries of shoot organs and controls stem growth. Plant Cell. 20:2059-2072.
    • (2008) Plant Cell , vol.20 , pp. 2059-2072
    • Gomez-Mena, C.1    Sablowski, R.2
  • 8
    • 0034712758 scopus 로고    scopus 로고
    • The origin of plants: Body plan changes contributing to a major evolutionary radiation
    • Graham LE, Cook ME, Busse JS. 2000. The origin of plants: body plan changes contributing to a major evolutionary radiation. Proc Natl Acad Sci USA. 97:4535-4540.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 4535-4540
    • Graham, L.E.1    Cook, M.E.2    Busse, J.S.3
  • 9
    • 3342949982 scopus 로고    scopus 로고
    • Resistant tissues of modern marchantioid liverworts resemble enigmatic Early Paleozoic microfossils
    • Graham LE, Wilcox LW, Cook ME, Gensel PG. 2004. Resistant tissues of modern marchantioid liverworts resemble enigmatic Early Paleozoic microfossils. Proc Natl Acad Sci USA. 101:11025-11029.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11025-11029
    • Graham, L.E.1    Wilcox, L.W.2    Cook, M.E.3    Gensel, P.G.4
  • 10
    • 78650469940 scopus 로고    scopus 로고
    • Nuclear pre-mRNA processing in plants
    • Reddy ASN, Golovkin M, editors Berlin (Germany): Springer
    • Haas BJ. 2008. Nuclear pre-mRNA processing in plants. In: Reddy ASN, Golovkin M, editors. Current topics in microbiology and immunology. Berlin (Germany): Springer. p. 17-37.
    • (2008) Current Topics in Microbiology and Immunology , pp. 17-37
    • Haas, B.J.1
  • 11
    • 16344395913 scopus 로고    scopus 로고
    • A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins
    • Hackbusch J, Rischter K, Müller J, Salamini F, Uhrig JF. 2005. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. Proc Natl Acad Sci USA. 102: 4908-4912.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 4908-4912
    • Hackbusch, J.1    Rischter, K.2    Müller, J.3    Salamini, F.4    Uhrig, J.F.5
  • 13
    • 51349148323 scopus 로고    scopus 로고
    • Homologous versus antithetic alternation of generations and the origin of sporophytes
    • Haig D. 2008. Homologous versus antithetic alternation of generations and the origin of sporophytes. Bot Rev. 74:395-418.
    • (2008) Bot Rev , vol.74 , pp. 395-418
    • Haig, D.1
  • 14
    • 62549136610 scopus 로고    scopus 로고
    • Local cues and asymmetric cell divisions underpin body plan transitions in the moss Physcomitrella patens
    • Harrison CJ, Roeder AHK, Meyerowitz EM, Langdale JA. 2009. Local cues and asymmetric cell divisions underpin body plan transitions in the moss Physcomitrella patens. Curr Biol. 19:461-471.
    • (2009) Curr Biol , vol.19 , pp. 461-471
    • Harrison, C.J.1    Ahk, R.2    Meyerowitz, E.M.3    Langdale, J.A.4
  • 15
    • 0038120839 scopus 로고    scopus 로고
    • Comparative analysis of the Arabidopsis pollen transcriptome
    • Honys D, Twell D. 2003. Comparative analysis of the Arabidopsis pollen transcriptome. Plant Physiol. 132:640-652.
    • (2003) Plant Physiol , vol.132 , pp. 640-652
    • Honys, D.1    Twell, D.2
  • 17
    • 21244481342 scopus 로고    scopus 로고
    • Interpolation hypothesis for origin of the vegetative sporophyte of land plants
    • Kato M, Akiyama H. 2005. Interpolation hypothesis for origin of the vegetative sporophyte of land plants. Taxon 54:443-450.
    • (2005) Taxon , vol.54 , pp. 443-450
    • Kato, M.1    Akiyama, H.2
  • 18
    • 67650924274 scopus 로고    scopus 로고
    • PanGEA: Identification of allele specific gene expression using the 454 technology
    • Kofler R, Torres TT, Lelley T, Schlötterer C. 2009. PanGEA: identification of allele specific gene expression using the 454 technology. BMC Bioinformatics. 10:143.
    • (2009) BMC Bioinformatics , vol.10 , pp. 143
    • Kofler, R.1    Torres, T.T.2    Lelley, T.3    Schlötterer, C.4
  • 19
    • 77958506746 scopus 로고    scopus 로고
    • Genome-wide classification and phylogenetic comparative analysis of transcriptional regulation in plants: Timeline for a story of loss, gain, expansion and evolutionary correlation with morphological complexity
    • Lang D, Weiche B, Timmerhaus G, Richardt S, Riaño-Pachón DM, Corrêa LG, Reski R, Mueller-Roeber B, Rensing SA. 2010. Genome-wide classification and phylogenetic comparative analysis of transcriptional regulation in plants: timeline for a story of loss, gain, expansion and evolutionary correlation with morphological complexity. Genome Biol Evol. 2:488-503.
    • (2010) Genome Biol Evol. , vol.2 , pp. 488-503
    • Lang, D.1    Weiche, B.2    Timmerhaus, G.3    Richardt, S.4    Riaño-Pachón, D.M.5    Corrêa, L.G.6    Reski, R.7    Mueller-Roeber, B.8    Rensing, S.A.9
  • 20
    • 53449102833 scopus 로고    scopus 로고
    • Evolution of developmental mechanisms in plants
    • Langdale JA. 2008. Evolution of developmental mechanisms in plants. Curr Opin Genet Dev. 18:368-373.
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 368-373
    • Langdale, J.A.1
  • 21
    • 59949093651 scopus 로고    scopus 로고
    • Male reproductive development: Gene expression profiling of maize anther and pollen ontogeny
    • Ma J, Skibbe DS, Fernandes J, Walbot V. 2008. Male reproductive development: gene expression profiling of maize anther and pollen ontogeny. Genome Biol. 9:R181.
    • (2008) Genome Biol. , vol.9
    • Ma, J.1    Skibbe, D.S.2    Fernandes, J.3    Walbot, V.4
  • 22
    • 73449098946 scopus 로고    scopus 로고
    • TCP genes: A family snapshot ten years later
    • Mart́n-Trillo M, Cubas P. 2009. TCP genes: a family snapshot ten years later. Trends Plant Sci. 15:31-39.
    • (2009) Trends Plant Sci , vol.15 , pp. 31-39
    • Mart́n-Trillo, M.1    Cubas, P.2
  • 24
    • 69449106863 scopus 로고    scopus 로고
    • Regulation of stem cell maintenance by the polycomb protein FIE has been conserved during land plant evolution
    • Mosquna A, Katz A, Decker EL, Rensing SA, Reski R, Ohad N. 2009. Regulation of stem cell maintenance by the polycomb protein FIE has been conserved during land plant evolution. Development 136:2433-2444.
    • (2009) Development , vol.136 , pp. 2433-2444
    • Mosquna, A.1    Katz, A.2    Decker, E.L.3    Rensing, S.A.4    Reski, R.5    Ohad, N.6
  • 25
    • 71249116114 scopus 로고    scopus 로고
    • The evolution of the plant life cycle
    • Niklas KJ, Kutschera U. 2009. The evolution of the plant life cycle. New Phytol. 185:27-41.
    • (2009) New Phytol , vol.185 , pp. 27-41
    • Niklas, K.J.1    Kutschera, U.2
  • 26
    • 0038270852 scopus 로고    scopus 로고
    • Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implications for land plant evolution
    • (12 co-authors)
    • Nishiyama T, Fujita T, Shin-I T, et al. (12 co-authors). 2003. Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implications for land plant evolution. Proc Natl Acad Sci USA. 13:8007-8012.
    • (2003) Proc Natl Acad Sci USA , vol.13 , pp. 8007-8012
    • Nishiyama, T.1    Fujita, T.2    Shin-I, T.3
  • 27
    • 70349507539 scopus 로고    scopus 로고
    • A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution
    • Okano Y, Aono A, Hiwatashi Y, Murata T, Nishiyama T, Ishikawa T, Kubo M, Hasabe M. 2009. A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution. Proc Natl Acad Sci USA. 106:16321-16326.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 16321-16326
    • Okano, Y.1    Aono, A.2    Hiwatashi, Y.3    Murata, T.4    Nishiyama, T.5    Ishikawa, T.6    Kubo, M.7    Hasabe, M.8
  • 28
    • 26944493068 scopus 로고    scopus 로고
    • Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation
    • Pina C, Pinto F, Feijo JA, Becker JD. 2005. Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol. 138:744-756.
    • (2005) Plant Physiol , vol.138 , pp. 744-756
    • Pina, C.1    Pinto, F.2    Feijo, J.A.3    Becker, J.D.4
  • 29
    • 68949161539 scopus 로고    scopus 로고
    • Small RNAs and developmental timing in plants
    • Poethig RS. 2009. Small RNAs and developmental timing in plants. Curr Opin Genet Dev. 19:374-378.
    • (2009) Curr Opin Genet Dev , vol.19 , pp. 374-378
    • Poethig, R.S.1
  • 31
    • 56849112458 scopus 로고    scopus 로고
    • Phylogeny and evolution of charophytic algae and land plants
    • Qiu YL. 2008. Phylogeny and evolution of charophytic algae and land plants. J Syst Evol. 46:287-306.
    • (2008) J Syst Evol , vol.46 , pp. 287-306
    • Qiu, Y.L.1
  • 32
    • 33750303564 scopus 로고    scopus 로고
    • The deepest divergences in land plants inferred from phylogenomic evidence
    • (21 co-authors)
    • Qiu YL, Li L, Wang B, et al. (21 co-authors). 2006. The deepest divergences in land plants inferred from phylogenomic evidence. Proc Natl Acad Sci USA. 103:15511-15516.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 15511-15516
    • Qiu, Y.L.1    Li, L.2    Wang, B.3
  • 33
    • 34548028479 scopus 로고    scopus 로고
    • The MADS-domain protein PPM2 preferentially occurs in gametangia and spor-ophytes of the moss Physcomitrella patens
    • Quodt V, Faigl W, Saedler H, Münster T. 2007. The MADS-domain protein PPM2 preferentially occurs in gametangia and spor-ophytes of the moss Physcomitrella patens. Gene 400:25-34.
    • (2007) Gene , vol.400 , pp. 25-34
    • Quodt, V.1    Faigl, W.2    Saedler, H.3    Münster, T.4
  • 34
    • 84863304598 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • ISBN 3-900051-07-0. [cited 2010 July 10]. Available from
    • R Development Core Team. 2006. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing.ISBN 3-900051-07-0. [cited 2010 July 10] Available from: http://www.R-project.org
    • (2006) Vienna (Austria): R Foundation for Statistical Computing
  • 35
    • 37849032457 scopus 로고    scopus 로고
    • The genome of the moss Physcomitrella patens reveals evolutionary insights into the conquest of land by plants
    • (70 co-authors)
    • Rensing SA, Lang D, Zimmer AD, et al. (70 co-authors). 2008. The genome of the moss Physcomitrella patens reveals evolutionary insights into the conquest of land by plants. Science 319:64-69.
    • (2008) Science , vol.319 , pp. 64-69
    • Rensing, S.A.1    Lang, D.2    Zimmer, A.D.3
  • 37
    • 13444262397 scopus 로고    scopus 로고
    • KNOX homeobox genes potentially have similar function in both diploid unicellular and multicellular meristems, but not in haploid meristems
    • Sano R, Juárez CM, Hass B, Sakakibara K, Ito M, Banks JA, Hasabe M. 2005. KNOX homeobox genes potentially have similar function in both diploid unicellular and multicellular meristems, but not in haploid meristems. Evol Dev. 7:69-78.
    • (2005) Evol Dev , vol.7 , pp. 69-78
    • Sano, R.1    Juárez, C.M.2    Hass, B.3    Sakakibara, K.4    Ito, M.5    Banks, J.A.6    Hasabe, M.7
  • 38
    • 16244362244 scopus 로고    scopus 로고
    • A gene expression map of Arabidopsis development
    • (9 co-authors)
    • Schmid M, Davison TS, Henz SR, et al. (9 co-authors). 2005. A gene expression map of Arabidopsis development. Nat Genet. 37:501-506.
    • (2005) Nat Genet , vol.37 , pp. 501-506
    • Schmid, M.1    Davison, T.S.2    Henz, S.R.3
  • 39
    • 36448991210 scopus 로고    scopus 로고
    • Revelation of ancestral roles of KNOX genes by a functional analysis of Physcomitrella homologues
    • Singer SD, Ashton NW. 2007. Revelation of ancestral roles of KNOX genes by a functional analysis of Physcomitrella homologues. Plant Cell Rep. 26:2039-2054.
    • (2007) Plant Cell Rep , vol.26 , pp. 2039-2054
    • Singer, S.D.1    Ashton, N.W.2
  • 42
    • 45449097447 scopus 로고    scopus 로고
    • Fdrtool: A versatile R package for estimating local and tail area-based false discovery rates
    • Strimmer K. 2008. fdrtool: a versatile R package for estimating local and tail area-based false discovery rates. Bioinformatics 24:1461-1462.
    • (2008) Bioinformatics , vol.24 , pp. 1461-1462
    • Strimmer, K.1
  • 43
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • (11 co-authors)
    • Subramanian A, Tamayo P, Mootha VK, et al. (11 co-authors). 2005. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA. 102:15545-15550.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.