-
1
-
-
0018848546
-
Synthesis of secreted and membrane-bound lmmunoglobulin Mu heavy chains is directed by mRNAs that differ at their 3' ends
-
Alt FW, Bothwell MK, Knapp M, Siden E, Mather E, Koshland M, Baltimore D. Synthesis of secreted and membrane-bound lmmunoglobulin Mu heavy chains is directed by mRNAs that differ at their 3' ends. Cell. 1980;20:293.
-
(1980)
Cell
, vol.20
, pp. 293
-
-
Alt, F.W.1
Bothwell, M.K.2
Knapp, M.3
Siden, E.4
Mather, E.5
Koshland, M.6
Baltimore, D.7
-
2
-
-
0018896724
-
Two mRNAs can be produced from a single lmmunoglobulin u gene by alternative RNA processing pathways
-
Early P, Rogers J, Davis M, Ccalame K, Bond M, Wall R, Hood L. Two mRNAs can be produced from a single lmmunoglobulin u gene by alternative RNA processing pathways. Cell. 1980;20:313.
-
(1980)
Cell
, vol.20
, pp. 313
-
-
Early, P.1
Rogers, J.2
Davis, M.3
Ccalame, K.4
Bond, M.5
Wall, R.6
Hood, L.7
-
3
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet. 2008;40(12):1413.
-
(2008)
Nat Genet
, vol.40
, Issue.12
, pp. 1413
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
4
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature. 2008;456(7221):470.
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 470
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
5
-
-
84897406127
-
A promoter-level mammalian expression atlas
-
Consortium F, the RP, Clst, Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, et al. A promoter-level mammalian expression atlas. Nature. 2014;507(7493):462.
-
(2014)
Nature
, vol.507
, Issue.7493
, pp. 462
-
-
Forrest, A.R.1
Kawaji, H.2
Rehli, M.3
Baillie, J.K.4
Hoon, M.J.5
Haberle, V.6
Lassmann, T.7
-
6
-
-
13744254695
-
A large-scale analysis of mRNA polyadenylation of human and mouse genes
-
Tian B, Hu J, Zhang H, Lutz CS. A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res. 2005;33(1):201.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.1
, pp. 201
-
-
Tian, B.1
Hu, J.2
Zhang, H.3
Lutz, C.S.4
-
7
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen TW, Graveley BR. Expansion of the eukaryotic proteome by alternative splicing. Nature. 2010;463(7280):457.
-
(2010)
Nature
, vol.463
, Issue.7280
, pp. 457
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
8
-
-
79960088946
-
Cell-to-cell variability of alternative RNA splicing
-
Waks Z, Klein AM, Silver PA. Cell-to-cell variability of alternative RNA splicing. Mol Syst Biol. 2011;7:506.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 506
-
-
Waks, Z.1
Klein, A.M.2
Silver, P.A.3
-
9
-
-
84934324840
-
Single-cell polyadenylation site mapping reveals 3' isoform choice variability
-
Velten L, Anders S, Pekowska A, Jarvelin AI, Huber W, Pelechano V, Steinmetz LM. Single-cell polyadenylation site mapping reveals 3' isoform choice variability. Mol Syst Biol. 2015;11(6):812.
-
(2015)
Mol Syst Biol
, vol.11
, Issue.6
, pp. 812
-
-
Velten, L.1
Anders, S.2
Pekowska, A.3
Jarvelin, A.I.4
Huber, W.5
Pelechano, V.6
Steinmetz, L.M.7
-
10
-
-
84878997106
-
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
-
Shalek AK, Satija R, Adiconis X, Gertner RS, Gaublomme JT, Raychowdhury R, Schwartz S, Yosef N, Malboeuf C, Lu D, et al. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells. Nature. 2013;498(7453):236.
-
(2013)
Nature
, vol.498
, Issue.7453
, pp. 236
-
-
Shalek, A.K.1
Satija, R.2
Adiconis, X.3
Gertner, R.S.4
Gaublomme, J.T.5
Raychowdhury, R.6
Schwartz, S.7
Yosef, N.8
Malboeuf, C.9
Lu, D.10
-
11
-
-
84929697731
-
Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events
-
Tilgner H, Jahanbani F, Blauwkamp T, Moshrefi A, Jaeger E, Chen F, Harel I, Bustamante CD, Rasmussen M, Snyder MP. Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events. Nat Biotechnol. 2015;33(7):736.
-
(2015)
Nat Biotechnol
, vol.33
, Issue.7
, pp. 736
-
-
Tilgner, H.1
Jahanbani, F.2
Blauwkamp, T.3
Moshrefi, A.4
Jaeger, E.5
Chen, F.6
Harel, I.7
Bustamante, C.D.8
Rasmussen, M.9
Snyder, M.P.10
-
12
-
-
84942602825
-
Determining exon connectivity in complex mRNAs by nanopore sequencing
-
Bolisetty MT, Rajadinakaran G, Graveley BR. Determining exon connectivity in complex mRNAs by nanopore sequencing. Genome Biol. 2015;16(1):204.
-
(2015)
Genome Biol
, vol.16
, Issue.1
, pp. 204
-
-
Bolisetty, M.T.1
Rajadinakaran, G.2
Graveley, B.R.3
-
13
-
-
84877574893
-
Extensive transcriptional heterogeneity revealed by isoform profiling
-
Pelechano V, Wei W, Steinmetz LM. Extensive transcriptional heterogeneity revealed by isoform profiling. Nature. 2013;497(7447):127.
-
(2013)
Nature
, vol.497
, Issue.7447
, pp. 127
-
-
Pelechano, V.1
Wei, W.2
Steinmetz, L.M.3
-
14
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F et al. Landscape of transcription in human cells. Nature. 2012;489(7414):101.
-
(2012)
Nature.
, vol.489
, Issue.7414
, pp. 101
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
-
15
-
-
84887412533
-
A single-molecule long-read survey of the human transcriptome
-
Sharon D, Tilgner H, Grubert F, Snyder M. A single-molecule long-read survey of the human transcriptome. Nat Biotechnol. 2013;31(11):1009.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.11
, pp. 1009
-
-
Sharon, D.1
Tilgner, H.2
Grubert, F.3
Snyder, M.4
-
16
-
-
84944342787
-
Alternative transcription initiation leads to expression of a novel ALK isoform in cancer
-
Wiesner T, Lee W, Obenauf AC, Ran L, Murali R, Zhang QF, Wong EW, Hu W, Scott SN, Shah RH, et al. Alternative transcription initiation leads to expression of a novel ALK isoform in cancer. Nature. 2015;526(7573):453.
-
(2015)
Nature
, vol.526
, Issue.7573
, pp. 453
-
-
Wiesner, T.1
Lee, W.2
Obenauf, A.C.3
Ran, L.4
Murali, R.5
Zhang, Q.F.6
Wong, E.W.7
Hu, W.8
Scott, S.N.9
Shah, R.H.10
-
17
-
-
79251644774
-
Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease
-
Twine NA, Janitz K, Wilkins MR, Janitz M. Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease. PLoS One. 2011;6(1):e16266.
-
(2011)
PLoS One
, vol.6
, Issue.1
-
-
Twine, N.A.1
Janitz, K.2
Wilkins, M.R.3
Janitz, M.4
-
18
-
-
84907301397
-
Single-cell identity generated by combinatorial homophilic interactions between alpha, beta, and gamma protocadherins
-
Thu CA, Chen WV, Rubinstein R, Chevee M, Wolcott HN, Felsovalyi KO, Tapia JC, Shapiro L, Honig B, Maniatis T. Single-cell identity generated by combinatorial homophilic interactions between alpha, beta, and gamma protocadherins. Cell. 2014;158(5):1045.
-
(2014)
Cell
, vol.158
, Issue.5
, pp. 1045
-
-
Thu, C.A.1
Chen, W.V.2
Rubinstein, R.3
Chevee, M.4
Wolcott, H.N.5
Felsovalyi, K.O.6
Tapia, J.C.7
Shapiro, L.8
Honig, B.9
Maniatis, T.10
-
19
-
-
84856484968
-
Counting absolute numbers of molecules using unique molecular identifiers
-
Kivioja T, Vaharautio A, Karlsson K, Bonke M, Enge M, Linnarsson S, Taipale J. Counting absolute numbers of molecules using unique molecular identifiers. Nat Methods. 2012;9(1):72.
-
(2012)
Nat Methods
, vol.9
, Issue.1
, pp. 72
-
-
Kivioja, T.1
Vaharautio, A.2
Karlsson, K.3
Bonke, M.4
Enge, M.5
Linnarsson, S.6
Taipale, J.7
-
20
-
-
84901857468
-
Towards error-free profiling of immune repertoires
-
Shugay M, Britanova OV, Merzlyak EM, Turchaninova MA, Mamedov IZ, Tuganbaev TR, Bolotin DA, Staroverov DB, Putintseva EV, Plevova K, et al. Towards error-free profiling of immune repertoires. Nat Methods. 2014;11(6):653.
-
(2014)
Nat Methods
, vol.11
, Issue.6
, pp. 653
-
-
Shugay, M.1
Britanova, O.V.2
Merzlyak, E.M.3
Turchaninova, M.A.4
Mamedov, I.Z.5
Tuganbaev, T.R.6
Bolotin, D.A.7
Staroverov, D.B.8
Putintseva, E.V.9
Plevova, K.10
-
21
-
-
79959353421
-
Detection and quantification of rare mutations with massively parallel sequencing
-
Kinde I, Wu J, Papadopoulos N, Kinzler KW, Vogelstein B. Detection and quantification of rare mutations with massively parallel sequencing. Proc Natl Acad Sci U S A. 2011;108(23):9530.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.23
, pp. 9530
-
-
Kinde, I.1
Wu, J.2
Papadopoulos, N.3
Kinzler, K.W.4
Vogelstein, B.5
-
22
-
-
84924565530
-
Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
-
Zeisel A, Munoz-Manchado AB, Codeluppi S, Lonnerberg P, La Manno G, Jureus A, Marques S, Munguba H, He L, Betsholtz C, et al. Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Science. 2015;347(6226):1138.
-
(2015)
Science
, vol.347
, Issue.6226
, pp. 1138
-
-
Zeisel, A.1
Munoz-Manchado, A.B.2
Codeluppi, S.3
Lonnerberg, P.4
Manno, G.5
Jureus, A.6
Marques, S.7
Munguba, H.8
He, L.9
Betsholtz, C.10
-
23
-
-
84895069488
-
Quantitative single-cell RNA-seq with unique molecular identifiers
-
Islam S, Zeisel A, Joost S, La Manno G, Zajac P, Kasper M, Lonnerberg P, Linnarsson S. Quantitative single-cell RNA-seq with unique molecular identifiers. Nat Methods. 2014;11(2):163.
-
(2014)
Nat Methods
, vol.11
, Issue.2
, pp. 163
-
-
Islam, S.1
Zeisel, A.2
Joost, S.3
Manno, G.4
Zajac, P.5
Kasper, M.6
Lonnerberg, P.7
Linnarsson, S.8
-
24
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, et al. Real-time DNA sequencing from single polymerase molecules. Science. 2009;323(5910):133.
-
(2009)
Science
, vol.323
, Issue.5910
, pp. 133
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
Peluso, P.7
Rank, D.8
Baybayan, P.9
Bettman, B.10
-
25
-
-
79959403670
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
-
Islam S, Kjallquist U, Moliner A, Zajac P, Fan JB, Lonnerberg P, Linnarsson S. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res. 2011;21(7):1160.
-
(2011)
Genome Res
, vol.21
, Issue.7
, pp. 1160
-
-
Islam, S.1
Kjallquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
Lonnerberg, P.6
Linnarsson, S.7
-
26
-
-
84873664803
-
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching
-
Tang DT, Plessy C, Salimullah M, Suzuki AM, Calligaris R, Gustincich S, Carninci P. Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching. Nucleic Acids Res. 2013;41(3):e44.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.3
-
-
Tang, D.T.1
Plessy, C.2
Salimullah, M.3
Suzuki, A.M.4
Calligaris, R.5
Gustincich, S.6
Carninci, P.7
-
27
-
-
84875700725
-
Predicting the molecular complexity of sequencing libraries
-
Daley T, Smith AD. Predicting the molecular complexity of sequencing libraries. Nat Methods. 2013;10(4):325.
-
(2013)
Nat Methods
, vol.10
, Issue.4
, pp. 325
-
-
Daley, T.1
Smith, A.D.2
-
28
-
-
84971282503
-
FastQC: a quality control tool for high throughput sequence data
-
FastQC: a quality control tool for high throughput sequence data. [http://www.bioinformatics.babraham.ac.uk/projects/fastqc].
-
-
-
-
29
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics. 2005;21(9):1859.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1859
-
-
Wu, T.D.1
Watanabe, C.K.2
-
30
-
-
85011353942
-
-
Accessed 30 Jul 2015.
-
CCDS Database. [ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/]. 2015. Accessed 30 Jul 2015.
-
(2015)
-
-
-
31
-
-
34447321852
-
Enhancements and modifications of primer design program Primer3
-
Koressaar T, Remm M. Enhancements and modifications of primer design program Primer3. Bioinformatics. 2007;23(10):1289.
-
(2007)
Bioinformatics
, vol.23
, Issue.10
, pp. 1289
-
-
Koressaar, T.1
Remm, M.2
-
32
-
-
85011353922
-
-
Accessed 17 July 2016.
-
Primer Blast. [http://www.ncbi.nlm.nih.gov/tools/primer-blast/] (2016). Accessed 17 July 2016.
-
(2016)
-
-
|