-
1
-
-
80052019696
-
Estimating the timing of early eukaryotic diversification with multigene molecular clocks
-
Parfrey LW, Lahr DJG, Knoll AH, Katz LA (2011) Estimating the timing of early eukaryotic diversification with multigene molecular clocks. Proc Natl Acad Sci USA 108(33):13624-13629.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.33
, pp. 13624-13629
-
-
Parfrey, L.W.1
Lahr, D.J.G.2
Knoll, A.H.3
Katz, L.A.4
-
2
-
-
0037154871
-
Plants compared to animals: The broadest comparative study of development
-
Meyerowitz EM (2002) Plants compared to animals: The broadest comparative study of development. Science 295(5559):1482-1485.
-
(2002)
Science
, vol.295
, Issue.5559
, pp. 1482-1485
-
-
Meyerowitz, E.M.1
-
3
-
-
27144540463
-
Are innate immune signaling pathways in plants and animals conserved?
-
Ausubel FM (2005) Are innate immune signaling pathways in plants and animals conserved? Nat Immunol 6(10):973-979.
-
(2005)
Nat Immunol
, vol.6
, Issue.10
, pp. 973-979
-
-
Ausubel, F.M.1
-
4
-
-
80053923336
-
Protein kinase signaling networks in plant innate immunity
-
Tena G, Boudsocq M, Sheen J (2011) Protein kinase signaling networks in plant innate immunity. Curr Opin Plant Biol 14(5):519-529.
-
(2011)
Curr Opin Plant Biol
, vol.14
, Issue.5
, pp. 519-529
-
-
Tena, G.1
Boudsocq, M.2
Sheen, J.3
-
5
-
-
22144455002
-
Common defences
-
Hunter P (2005) Common defences. EMBO Rep 6(6):504-507.
-
(2005)
EMBO Rep
, vol.6
, Issue.6
, pp. 504-507
-
-
Hunter, P.1
-
6
-
-
0035951792
-
Human Nod1 confers responsiveness to bacterial lipopolysaccharides
-
Inohara N, Ogura Y, Chen FF, Muto A, Nuñez G (2001) Human Nod1 confers responsiveness to bacterial lipopolysaccharides. J Biol Chem 276(4):2551-2554.
-
(2001)
J Biol Chem
, vol.276
, Issue.4
, pp. 2551-2554
-
-
Inohara, N.1
Ogura, Y.2
Chen, F.F.3
Muto, A.4
Nuñez, G.5
-
7
-
-
17644396670
-
CATERPILLER: A novel gene family important in immunity, cell death, and diseases
-
Ting JPY, Davis BK (2005) CATERPILLER: A novel gene family important in immunity, cell death, and diseases. Annu Rev Immunol 23(1):387-414.
-
(2005)
Annu Rev Immunol
, vol.23
, Issue.1
, pp. 387-414
-
-
Ting, J.P.Y.1
Davis, B.K.2
-
8
-
-
84874234544
-
NLR activation takes a direct route
-
Monie TP (2013) NLR activation takes a direct route. Trends Biochem Sci 38(3):131-139.
-
(2013)
Trends Biochem Sci
, vol.38
, Issue.3
, pp. 131-139
-
-
Monie, T.P.1
-
9
-
-
84886020336
-
Evolution and conservation of plant NLR functions
-
Jacob F, Vernaldi S, Maekawa T (2013) Evolution and conservation of plant NLR functions. Front Immunol 4:1-16.
-
(2013)
Front Immunol
, vol.4
, pp. 1-16
-
-
Jacob, F.1
Vernaldi, S.2
Maekawa, T.3
-
10
-
-
40449140937
-
The NLR gene family: A standard nomenclature
-
Ting JPY, et al. (2008) The NLR gene family: A standard nomenclature. Immunity 28(3):285-287.
-
(2008)
Immunity
, vol.28
, Issue.3
, pp. 285-287
-
-
Ting, J.P.Y.1
-
11
-
-
4644247731
-
STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: Multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer
-
Leipe DD, Koonin EV, Aravind L (2004) STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: Multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer. J Mol Biol 343(1):1-28.
-
(2004)
J Mol Biol
, vol.343
, Issue.1
, pp. 1-28
-
-
Leipe, D.D.1
Koonin, E.V.2
Aravind, L.3
-
12
-
-
0034194079
-
The NACHT family - A new group of predicted NTPases implicated in apoptosis and MHC transcription activation
-
Koonin EV, Aravind L (2000) The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 25(5):223-224.
-
(2000)
Trends Biochem Sci
, vol.25
, Issue.5
, pp. 223-224
-
-
Koonin, E.V.1
Aravind, L.2
-
13
-
-
0032568168
-
The NB-ARC domain: A novel signalling motif shared by plant resistance gene products and regulators of cell death in animals
-
van der Biezen EA, Jones JDG (1998) The NB-ARC domain: A novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 8(7):R226-R227.
-
(1998)
Curr Biol
, vol.8
, Issue.7
, pp. R226-R227
-
-
Van Der Biezen, E.A.1
Jones, J.D.G.2
-
14
-
-
65649140098
-
To nibble at plant resistance proteins
-
Takken FLW, Tameling WIL (2009) To nibble at plant resistance proteins. Science 324(5928):744-746.
-
(2009)
Science
, vol.324
, Issue.5928
, pp. 744-746
-
-
Takken, F.L.W.1
Tameling, W.I.L.2
-
15
-
-
84856540295
-
Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes
-
Yue J-X, Meyers BC, Chen J-Q, Tian D, Yang S (2012) Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes. New Phytol 193(4):1049-1063.
-
(2012)
New Phytol
, vol.193
, Issue.4
, pp. 1049-1063
-
-
Yue, J.-X.1
Meyers, B.C.2
Chen, J.-Q.3
Tian, D.4
Yang, S.5
-
16
-
-
84891816495
-
The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals
-
Yuen B, Bayes JM, Degnan SM (2014) The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals. Mol Biol Evol 31(1):106-120.
-
(2014)
Mol Biol Evol
, vol.31
, Issue.1
, pp. 106-120
-
-
Yuen, B.1
Bayes, J.M.2
Degnan, S.M.3
-
17
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H (2002) An approximately unbiased test of phylogenetic tree selection. Syst Biol 51(3):492-508.
-
(2002)
Syst Biol
, vol.51
, Issue.3
, pp. 492-508
-
-
Shimodaira, H.1
-
18
-
-
0001336205
-
-
Sinauer, Sunderland, MA
-
Swofford D, Olsen G, Waddell P, Hillis D (1996) Phylogenetic inference. Molecular systematics (Sinauer, Sunderland, MA), pp 407-514.
-
(1996)
Phylogenetic Inference. Molecular Systematics
, pp. 407-514
-
-
Swofford, D.1
Olsen, G.2
Waddell, P.3
Hillis, D.4
-
19
-
-
84946127183
-
Automation and evaluation of the SOWH test with SOWHAT
-
Church SH, Ryan JF, Dunn CW (2015) Automation and evaluation of the SOWH test with SOWHAT. Syst Biol 64(6):1048-1058.
-
(2015)
Syst Biol
, vol.64
, Issue.6
, pp. 1048-1058
-
-
Church, S.H.1
Ryan, J.F.2
Dunn, C.W.3
-
20
-
-
84911398612
-
Innate immunity in plants and animals
-
Haney CH, Urbach J, Ausubel FM (2014) Innate immunity in plants and animals. Biochemist 36(5):40-44.
-
(2014)
Biochemist
, vol.36
, Issue.5
, pp. 40-44
-
-
Haney, C.H.1
Urbach, J.2
Ausubel, F.M.3
-
21
-
-
0035783061
-
Protein repeats: Structures, functions, and evolution
-
Andrade MA, Perez-Iratxeta C, Ponting CP (2001) Protein repeats: Structures, functions, and evolution. J Struct Biol 134(2-3):117-131.
-
(2001)
J Struct Biol
, vol.134
, Issue.2-3
, pp. 117-131
-
-
Andrade, M.A.1
Perez-Iratxeta, C.2
Ponting, C.P.3
-
22
-
-
0031469143
-
Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato
-
Parniske M, et al. (1997) Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91(6):821-832.
-
(1997)
Cell
, vol.91
, Issue.6
, pp. 821-832
-
-
Parniske, M.1
-
23
-
-
84859407338
-
VLR-based adaptive immunity
-
Boehm T, et al. (2012) VLR-based adaptive immunity. Annu Rev Immunol 30:203-220.
-
(2012)
Annu Rev Immunol
, vol.30
, pp. 203-220
-
-
Boehm, T.1
-
24
-
-
74549125386
-
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27(2):221-224.
-
(2010)
Mol Biol Evol
, vol.27
, Issue.2
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
25
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5):1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
26
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9(4):286-298.
-
(2008)
Brief Bioinform
, vol.9
, Issue.4
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
27
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A (2014) RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30(9):1312-1313.
-
(2014)
Bioinformatics
, vol.30
, Issue.9
, pp. 1312-1313
-
-
Stamatakis, A.1
-
28
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59(3):307-321.
-
(2010)
Syst Biol
, vol.59
, Issue.3
, pp. 307-321
-
-
Guindon, S.1
-
29
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F, et al. (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61(3):539-42.
-
(2012)
Syst Biol
, vol.61
, Issue.3
, pp. 539-542
-
-
Ronquist, F.1
-
30
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira H, Hasegawa M (2001) CONSEL: For assessing the confidence of phylogenetic tree selection. Bioinformatics 17(12):1246-1247.
-
(2001)
Bioinformatics
, vol.17
, Issue.12
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
31
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K (2004) APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20(2):289-290.
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
|