Exploring genetic variation in haplotypes of the filariasis vector Culex quinquefasciatus (Diptera: Culicidae) through DNA barcoding

Acta Tropica

Volumn 169, Issue , 2017, Pages 43-50

  Vadivalagan, Chithravel ^a   Karthika, Pushparaj ^b   Murugan, Kadarkarai ^a,c   Panneerselvam, Chellasamy ^d   Del Serrone, Paola ^e   Benelli, Giovanni ^f  

^a BHARATHIAR UNIVERSITY   (India)

^b AVINASHILINGAM INSTITUTE FOR HOME SCIENCE AND HIGHER EDUCATION FOR WOMEN   (India)

^c THIRUVALLUVAR UNIVERSITY   (India)

^d UNIVERSITY OF TABUK   (Saudi Arabia)

^e Animal Production Research 16 Centre (CREA PCM)   (Italy)

^f UNIVERSITY OF PISA   (Italy)

Author keywords

CO1; DNA divergence; Genetic drift; Polymorphism; Rift Valley fever virus; West Nile virus

Indexed keywords

RNA 16S;

DNA; FILARIASIS; GENETIC DIFFERENTIATION; GENETIC VARIATION; PARASITE; PATHOGEN; POLYMORPHISM; RIFT ZONE; WEST NILE VIRUS;

16S RRNA GENE; ADULT; ARTICLE; BIOGEOGRAPHY; BOTTLENECK POPULATION; CO1 GENE; CONTROLLED STUDY; CULEX QUINQUEFASCIATUS; DNA BARCODING; FILARIASIS; GENE CLUSTER; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETIC VARIATION; HAPLOTYPE; IMAGO; MARKER GENE; MITOCHONDRIAL GENE; MOLECULAR ECOLOGY; MOLECULAR PHYLOGENY; NONHUMAN; SPECIES IDENTIFICATION; ANIMAL; CULEX; GENETICS; HUMAN; INDIA; INSECT VECTOR; PATHOGENICITY; PROCEDURES; RIFT VALLEY FEVER; RIFT VALLEY FEVER VIRUS;

AFRICA; ASIA;

ANIMALIA; CULEX PIPIENS QUINQUEFASCIATUS; CULICIDAE; DIPTERA; NEMATODA; RIFT VALLEY FEVER VIRUS; WEST NILE VIRUS; WESTERN EQUINE ENCEPHALOMYELITIS VIRUS;

ANIMALS; CULEX; DNA BARCODING, TAXONOMIC; FILARIASIS; GENETIC VARIATION; HAPLOTYPES; HUMANS; INDIA; INSECT VECTORS; RIFT VALLEY FEVER; RIFT VALLEY FEVER VIRUS; RNA, RIBOSOMAL, 16S;

EID: 85010878009     PISSN: 0001706X     EISSN: 18736254     Source Type: Journal    
DOI: 10.1016/j.actatropica.2017.01.020     Document Type: Article

References (48)

1. Adeleke, M.A., Mafiana, C.F., Idowu, A.B., Adekunle, M.F., Sam-Wobo, S.O., Mosquito laval habitats and public health implications in Abeokuta, Ogun State, Nigeria. Tanzanian J. Health Res. 10:2 (2008), 103–107.
2. Angel, B., Joshi, V., Distribution and seasonality of vertically transmitted dengue viruses in Aedes mosquitoes in arid and semi-arid areas of Rajasthan, India. J. Vector Borne Dis., 45, 2008, 56259.
3. Benelli, G., Mehlhorn, H., Declining malaria, rising dengue and Zika virus: insights for mosquito vector control. Parasitol. Res. 115 (2016), 1747–1754.
4. Benelli, G., Research in mosquito control: current challenges for a brighter future. Parasitol. Res. 114 (2015), 2801–2805.
5. Benelli, G., Green synthesized nanoparticles in the fight against mosquito-borne diseases and cancer – a brief review. Enzyme Microbial. Technol. 95 (2016), 58–68.
6. Bhattacharya, S., Basu, P., The southern house mosquito, Culex quinquefasciatus: profile of a smart vector. J. Entomol. Zool. Stud. 4 (2016), 73–81.
7. Bourke, B.P., Oliveira, T.P., Suesdek, L., Bergo, E.S., Sallum, M., A multi-locus approach to barcoding in the Anopheles strodei subgroup (Diptera: culicidae). Parasit. Vectors, 6, 2013, 111.
8. Calvez, E., Guillaumot, L., Millet, L., Marie, J., Bossin, H.H., Rama, V., et al. Genetic diversity and phylogeny of Aedes aegypti, the main arbovirus vector in the pacific. PLoS Negl. Trop. Dis., 10, 2016, e0004374, 10.1371/journal.pntd.0004374.
9. Chen, B., Harbach, R.E., Butlin, R.K., Molecular and morphological studies on the Anopheles minimus group of mosquitoes in southern China: taxonomic review, distribution and malaria vector status. Med. Vet. Entomol. 16 (2002), 253–265.
10. Chu, K.H., Li, C., Qi, J., Ribosomal RNA as molecular barcodes: a simple correlation analysis without sequence alignment. Bioinformatics 22 (2006), 1690–1701.
11. Cywinska, A., Hunter, F.F., Hebert, P.D., Identifying Canadian mosquito species through DNA barcodes. Med. Vet. Entomol. 20:4 (2006), 413–424.
12. Engler, O., Savini, G., Papa, A., Figuerola, J., Groschup, M.H., et al. European surveillance for West Nile virus in mosquito populations. Int. J. Environ. Res. Public Health 10 (2013), 4869–4895.
13. Fansiri, T., Fontaine, A., Diancourt, L., Caro, V., Thaisomboonsuk, B., et al. Genetic mapping of specific interactions between Aedes aegypti mosquitoes and dengue viruses. PLoS Genet., 9, 2013, e1003621.
14. Foster, W.A., Walker, E.D., Mosquitoes (Culicidae). Mullen, G., Durden, L., (eds.) Medical and Veterinary Entomology, 2002, Academic Press, New York, 245–249.
15. Foster, P.G., Bergo, E.S., Bourke, B.P., Oliveira, T.P., Nagaki, S.S., Sant'Ana, D.C., Sallum, M.A.M., Phylogenetic analysis and DNA-based species confirmation in Anopheles (Nyssorhynchus). PLoS One, 8, 2013, 54063.
16. Gaffigan, T.V., Wilkerson, R.C., Pecor, J.E., Stoffer, J.A., Anderson, T., Systematic Catalog of Culicidae. 2015 http://www.mosquitocatalog.org/.
17. Garvey, K., Are Culex Mosquitoes Potential Vectors of the Zika Virus? Bug Squad, Happenings in the Insect World. 2016 (accessed 2.03.2016) http://ucanr.edu/blogs/blogcore/postdetail.cfm?postnum=20369.
18. Guedes, D.R., Paiva, M.H., Donato, M.M., Barbosa, P.P., Krokovsky, L., SWDS, Rocha, Saraiva, K.L., Crespo, M.M., Barbosa, R.M., Oliveira, C.M., Melo-Santos, M.A., Zika virus replication in the mosquito Culex quinquefasciatus in Brazil. bioRxiv, 2016, 073197.
19. Gunay, F., Alten, B., Simsek, F., Aldemir, A., Linton, Y.M., Barcoding Turkish Culex mosquitoes to facilitate arbovirus vector incrimination studies reveals hidden diversity and new potential vectors. Acta Trop. 143 (2015), 112–120.
20. Guo, X.X., Li, C.X., Deng, Y.Q., Xing, D., Liu, Q.M., Wu, Q., Sun, A.J., Cao, W.C., Qin, C.F., Zhao, T.Y., Culex pipiens quinquefasciatus: a potential vector to transmit Zika virus. Emerg. Microb. Infect., 5(9), 2016, e102.
21. Hall, T.A., BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999), 95–98.
22. Hammer, M.F., Garrigan, D., Wood, E., Wilder, J.A., Mobasher, Z., et al. Heterogeneous patterns of variation among multiple human X-linked loci: the possible role of diversity-reducing selection in non-Africans. Genetics 167 (2004), 1841–1853.
23. Hebert, P.D.N., Cywinska, A., Ball, S.L., de Waard, J.R., Biological identifications through DNA barcodes. Proc. R. Soc. Lond. B 270 (2003), 313–322.
24. Jukes, T.H., Cantor, C.R., Evolution of protein molecules. Munro, H.N., (eds.) Mammalian Protein Metabolism, 1969, Academic, New York, 21–132.
25. Karthika, P., Krishnaveni, N., Vadivalagan, C., Murugan, K., Nicoletti, M., Benelli, G., DNA barcoding and evolutionary lineage of 15 insect pests of horticultural crops in South India. Karbala Int. J. Mod. Sci. 2:3 (2016), 156–168.
26. Karthika, P., Vadivalagan, C., Krishnaveni, N., Murugan, K., Nicoletti, M., Canale, A., Benelli, G., Contrasting genetic diversity and intra-population polymorphism of the invasive pest Henosepilachna vigintioctopunctata (Coleoptera, Coccinellidae): a DNA barcoding approach. J. Asia-Pac. Entomol. 20 (2017), 23–29.
27. Kent, R.J., Norris, D.E., Identification of mammalian blood meals in mosquitoes by a multiplexed polymerase chain reaction targeting cytochrome B. Am. J. Trop. Med. Hyg. 73:2 (2005), 336–342.
28. Kumar, N.P., Rajavel, A.R., Natarajan, R., Jambulingam, P., DNA barcodes can distinguish species of Indian mosquitoes (Diptera: culicidae). J. Med. Entomol. 44 (2007), 1–7.
29. La Deau, S.L., Leisnham, P.T., Biehler, D., Bodner, D., Higher mosquito production in low-income neighborhoods of Baltimore and Washington, DC: understanding ecological drivers and mosquito-borne disease risk in temperate cities. Int. J. Environ. Res. Public Health 10 (2013), 1505–1526.
30. Laurito, M., de Oliveira, T.M., Almiron, W.R., Sallum, M.A.M., COI barcode versus morphological identification of Culex (Culex) (Diptera: culicidae) species: a case study using samples from Argentina and Brazil. Memór Inst. Oswaldo Cruz 108 (2013), 110–122.
31. Librado, P., Rozas, J., DnaSP v5: software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25 (2009), 1451–1452.
32. Lindh, J.M., Terenius, O., Faye, I., 16S rRNA gene-based identification of midgut bacteria from field-caught Anopheles gambiae sensu lato and A. funestus mosquitoes reveals new species related to known insect symbionts. Appl. Environ. Microbiol. 71:11 (2005), 7217–7223.
33. Marrelli, M.T., Malafronte, R.S., Flores-Mendoza, C., Lourenço-De-Oliveira, R., Kloetzel, J.K., Marinotti, O., Sequence analysis of the second internal transcribed spacer of ribosomal DNA in Anopheles oswaldoi (Diptera: culicidae). J. Med. Entomol. 36:6 (1999), 679–684.
34. Merget, B., Koetschan, C., Hackl, T., Forster, F., Dandekar, T., Muller, T., Schultz, J., Wolf, M., The ITS2 database. J. Vis. Exp., 61(3806), 2012 (10–3791/3806).
35. Mousson, L., Dauga, C., Garrigues, T., Schaffner, F., Vazeille, M., et al. Phylogeography of aedes (Stegomyia) aegypti (L.) and Aedes (Stegomyia) albopictus (Skuse) (Diptera: culicidae) based on mitochondrial DNA variations. Genet. Res. Camb., 86, 2005, 1211.
36. Murugan, K., Vadivalagan, C., Karthika, P., Panneerselvam, C., Paulpandi, M., Subramaniam, J., Wei, H., Al Thabiani, A., Saleh Alsalhi, M., Devanesan, S., Nicoletti, M., Paramasivan, R., Parajulee, M.N., Benelli, G., DNA barcoding and molecular evolution of mosquito vectors of medical and veterinary importance. Parasitol. Res. 115 (2016), 107–121.
37. Oshaghi, M.A., Shemshad, K., Yaghobi-Ershadi, M.R., Pedram, M., Vatandoost, H., Abaie, M.R., Akbarzadeh, K., Mohtarami, F., Genetic structure of the malaria vector Anopheles superpictus in Iran using mitochondrial cytochrome oxidase (COI and COII) and morphologic markers: a new species complex?. Acta Trop. 101:3 (2007), 241–248.
38. Pakalapati, D., Garg, S., Middha, S., Acharya, J., Subudhi, A.K., Boopathi, A.P., Saxena, V., Kochar, S.K., Kochar, D.K., Das, A., Development and evaluation of a 28S rRNA gene-based nested PCR assay for P. falciparum and P. vivax. Pathog. Glob. Health 107:4 (2013), 180–188.
39. Rubinoff, D., DNA barcoding evolves into the familiar. Conser. Biol. 20 (2006), 1548–1549.
40. Ruiz-Lopez, F., Wilkerson, R.C., Conn, J.E., McKeon, S.N., Levin, D.M., Quiñones, M.L., Póvoa, M.M., Linton, Y.-M., DNA barcoding reveals both known and novel taxa in the Albitarsis group (Anopheles: nyssorhynchus) of Neotropical malaria vectors. Parasit. Vectors, 5, 2012, 44.
41. Saitou, N., Nei, M., The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987), 406–425.
42. Shen, Y.-Y., Chen, X., Murphy, R.W., Assessing DNA barcoding as a tool for species identification and data quality control. PLoS One, 8, 2013, e57125.
43. Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30 (2013), 2725–2729.
44. Thongsripong, P., Green, A., Kittayapong, P., Kapan, D., Wilcox, B., et al. Mosquito vector diversity across habitats in central Thailand endemic for dengue and other arthropod-borne diseases. PLoS Negl. Trop. Dis., 7, 2013, e2507.
45. Vadivalagan, C., Karthika, P., Murugan, K., Panneerselvam, C., Paulpandi, M., Madhiyazhagan, P., Wei, H., Aziz, A.T., Saleh Alsalhi, M., Devanesan, S., Nicoletti, M., Paramasivan, R., Dinesh, D., Benelli, G., Genetic deviation in geographically close populations of the dengue vector Aedes aegypti (Diptera: culicidae): influence of environmental barriers in South India. Parasitol. Res. 115 (2016), 1149–1160.
46. Webster, B.L., Emery, A.M., Webster, J.P., Gouvras, A., Garba, A., Diaw, O., Seye, M.M., Tchuente, L.A.T., Simoonga, C., Mwanga, J., Genetic diversity within Schistosoma haematobium: DNA barcoding reveals two distinct groups. PLoS Negl. Trop. Dis., 6, 2012, e1882.
47. Wilke, et al. Population genetics of neotropical culex quinquefasciatus (Diptera: culicidae). Parasit. Vectors, 7, 2014, 468.
48. Zhong, D., Lo, E., Hu, R., Metzger, M.E., Cummings, R., Bonizzoni, M., et al. Genetic analysis of invasive Aedes albopictus populations in los angeles county, california and its potential public health impact. PLoS One 8 (2013), 1–9, 10.1371/journal.pone.0068586.