-
1
-
-
84857039557
-
The intestinal microbiota in health and disease
-
Young VB. 2012. The intestinal microbiota in health and disease. Curr Opin Gastroenterol 28:63-69. https://doi.org/10.1097/MOG.0b013e32834d61e9
-
(2012)
Curr Opin Gastroenterol
, vol.28
, pp. 63-69
-
-
Young, V.B.1
-
2
-
-
84861011960
-
Diversity of bifidobacteria within the infant gut microbiota
-
Turroni F, Peano C, Pass DA, Foroni E, Severgnini M, Claesson MJ, Kerr C, Hourihane J, Murray D, Fuligni F, Gueimonde M, Margolles A, De Bellis G, O'Toole PW, van Sinderen D, Marchesi JR, Ventura M. 2012. Diversity of bifidobacteria within the infant gut microbiota. PLoS One 7:e36957. https://doi.org/10.1371/journal.pone.0036957
-
(2012)
PLoS One
, vol.7
-
-
Turroni, F.1
Peano, C.2
Pass, D.A.3
Foroni, E.4
Severgnini, M.5
Claesson, M.J.6
Kerr, C.7
Hourihane, J.8
Murray, D.9
Fuligni, F.10
Gueimonde, M.11
Margolles, A.12
De Bellis, G.13
O'Toole, P.W.14
van Sinderen, D.15
Marchesi, J.R.16
Ventura, M.17
-
3
-
-
80053596783
-
Food animals and antimicrobials: impacts on human health
-
Marshall BM, Levy SB. 2011. Food animals and antimicrobials: impacts on human health. Clin Microbiol Rev 24:718-733. https://doi.org/10.1128/CMR.00002-11
-
(2011)
Clin Microbiol Rev
, vol.24
, pp. 718-733
-
-
Marshall, B.M.1
Levy, S.B.2
-
4
-
-
84957990262
-
Antibiotics and the human gut microbiome: dysbioses and accumulation of resistances
-
Francino MP. 2015. Antibiotics and the human gut microbiome: dysbioses and accumulation of resistances. Front Microbiol 6:1543. https://doi.org/10.3389/fmicb.2015.01543
-
(2015)
Front Microbiol
, vol.6
, pp. 1543
-
-
Francino, M.P.1
-
5
-
-
84961941183
-
Probiotic approach to prevent antibiotic resistance
-
Ouwehand AC, Forssten S, Hibberd AA, Lyra A, Stahl B. 2016. Probiotic approach to prevent antibiotic resistance. Ann Med 48:246-255. https://doi.org/10.3109/07853890.2016.1161232
-
(2016)
Ann Med
, vol.48
, pp. 246-255
-
-
Ouwehand, A.C.1
Forssten, S.2
Hibberd, A.A.3
Lyra, A.4
Stahl, B.5
-
6
-
-
13844254907
-
Outpatient antibiotic use in Europe and association with resistance: a cross-national database study
-
Goossens H, Ferech M, Stichele RV, Elseviers M, Grp EP. 2005. Outpatient antibiotic use in Europe and association with resistance: a cross-national database study. Lancet 365:579-587. https://doi.org/10.1016/S0140-6736(05)70799-6
-
(2005)
Lancet
, vol.365
, pp. 579-587
-
-
Goossens, H.1
Ferech, M.2
Stichele, R.V.3
Elseviers, M.4
Grp, E.P.5
-
7
-
-
84903167988
-
Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes
-
Huddleston JR. 2014. Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes. Infect Drug Resist 7:167-176. https://doi.org/10.2147/IDR.S48820
-
(2014)
Infect Drug Resist
, vol.7
, pp. 167-176
-
-
Huddleston, J.R.1
-
8
-
-
84924711454
-
Intestinal microbiota development in preterm neonates and effect of perinatal antibiotics
-
Arboleya S, Sanchez B, Milani C, Duranti S, Solis G, Fernandez N, de los Reyes-Gavilan CG, Ventura M, Margolles A, Gueimonde M. 2015. Intestinal microbiota development in preterm neonates and effect of perinatal antibiotics. J Pediatr 166:538-544. https://doi.org/10.1016/j.jpeds.2014.09.041
-
(2015)
J Pediatr
, vol.166
, pp. 538-544
-
-
Arboleya, S.1
Sanchez, B.2
Milani, C.3
Duranti, S.4
Solis, G.5
Fernandez, N.6
de los Reyes-Gavilan, C.G.7
Ventura, M.8
Margolles, A.9
Gueimonde, M.10
-
9
-
-
84868036621
-
High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin
-
Fouhy F, Guinane CM, Hussey S, Wall R, Ryan CA, Dempsey EM, Murphy B, Ross RP, Fitzgerald GF, Stanton C, Cotter PD. 2012. High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin. Antimicrob Agents Chemother 56:5811-5820. https://doi.org/10.1128/AAC.00789-12
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 5811-5820
-
-
Fouhy, F.1
Guinane, C.M.2
Hussey, S.3
Wall, R.4
Ryan, C.A.5
Dempsey, E.M.6
Murphy, B.7
Ross, R.P.8
Fitzgerald, G.F.9
Stanton, C.10
Cotter, P.D.11
-
10
-
-
84893042772
-
Antibiotic resistance profile of lactic acid bacteria and their implications in food chain
-
Patel AR, Shah NP, Prajapati JB. 2012. Antibiotic resistance profile of lactic acid bacteria and their implications in food chain. World J Dairy Food Sci 7:202-211
-
(2012)
World J Dairy Food Sci
, vol.7
, pp. 202-211
-
-
Patel, A.R.1
Shah, N.P.2
Prajapati, J.B.3
-
11
-
-
84907266451
-
Genomic encyclopedia of type strains of the genus Bifidobacterium
-
Milani C, Lugli GA, Duranti S, Turroni F, Bottacini F, Mangifesta M, Sanchez B, Viappiani A, Mancabelli L, Taminiau B, Delcenserie V, Barrangou R, Margolles A, van Sinderen D, Ventura M. 2014. Genomic encyclopedia of type strains of the genus Bifidobacterium. Appl Environ Microbiol 80:6290-6302. https://doi.org/10.1128/AEM.02308-14
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 6290-6302
-
-
Milani, C.1
Lugli, G.A.2
Duranti, S.3
Turroni, F.4
Bottacini, F.5
Mangifesta, M.6
Sanchez, B.7
Viappiani, A.8
Mancabelli, L.9
Taminiau, B.10
Delcenserie, V.11
Barrangou, R.12
Margolles, A.13
van Sinderen, D.14
Ventura, M.15
-
12
-
-
84907267761
-
Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics
-
Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M. 2014. Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics. Appl Environ Microbiol 80: 6383-6394. https://doi.org/10.1128/AEM.02004-14
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 6383-6394
-
-
Lugli, G.A.1
Milani, C.2
Turroni, F.3
Duranti, S.4
Ferrario, C.5
Viappiani, A.6
Mancabelli, L.7
Mangifesta, M.8
Taminiau, B.9
Delcenserie, V.10
van Sinderen, D.11
Ventura, M.12
-
13
-
-
85061109816
-
Scientific opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2013 update)
-
European Food Safety Authority. 2015. Scientific opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2013 update). EFSA J 11:3449
-
(2015)
EFSA J
, vol.11
, pp. 3449
-
-
-
14
-
-
84924279798
-
Safety of Bifidobacterium animalis subsp. lactis (B. lactis) strain BB-12-supplemented yogurt in healthy adults on antibiotics: a phase I safety study
-
Merenstein DJ, Tan TP, Molokin A, Smith KH, Roberts RF, Shara NM, Mete M, Sanders ME, Solano-Aguilar G. 2015. Safety of Bifidobacterium animalis subsp. lactis (B. lactis) strain BB-12-supplemented yogurt in healthy adults on antibiotics: a phase I safety study. Gut Microbes 6:66-77. https://doi.org/10.1080/19490976.2015.1005484
-
(2015)
Gut Microbes
, vol.6
, pp. 66-77
-
-
Merenstein, D.J.1
Tan, T.P.2
Molokin, A.3
Smith, K.H.4
Roberts, R.F.5
Shara, N.M.6
Mete, M.7
Sanders, M.E.8
Solano-Aguilar, G.9
-
15
-
-
85078066318
-
Guidance on the assessment of bacterial susceptibility to antimicrobials of human and veterinary importance
-
European Food Safety Authority. 2012. Guidance on the assessment of bacterial susceptibility to antimicrobials of human and veterinary importance. EFSA J 10:2740
-
(2012)
EFSA J
, vol.10
, pp. 2740
-
-
-
16
-
-
84879017399
-
The comprehensive antibiotic resistance database
-
McArthur AG, Waglechner N, Nizam F, Yan A, Azad MA, Baylay AJ, Bhullar K, Canova MJ, De Pascale G, Ejim L, Kalan L, King AM, Koteva K, Morar M, Mulvey MR, O'Brien JS, Pawlowski AC, Piddock LJ, Spanogiannopoulos P, Sutherland AD, Tang I, Taylor PL, Thaker M, Wang W, Yan M, Yu T, Wright GD. 2013. The comprehensive antibiotic resistance database. Antimicrob Agents Chemother 57:3348-3357. https://doi.org/10.1128/AAC.00419-13
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 3348-3357
-
-
McArthur, A.G.1
Waglechner, N.2
Nizam, F.3
Yan, A.4
Azad, M.A.5
Baylay, A.J.6
Bhullar, K.7
Canova, M.J.8
De Pascale, G.9
Ejim, L.10
Kalan, L.11
King, A.M.12
Koteva, K.13
Morar, M.14
Mulvey, M.R.15
O'Brien, J.S.16
Pawlowski, A.C.17
Piddock, L.J.18
Spanogiannopoulos, P.19
Sutherland, A.D.20
Tang, I.21
Taylor, P.L.22
Thaker, M.23
Wang, W.24
Yan, M.25
Yu, T.26
Wright, G.D.27
more..
-
17
-
-
84891921975
-
In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to beta-lactams
-
Fouhy F, O'Connell Motherway M, Fitzgerald GF, Ross RP, Stanton C, van Sinderen D, Cotter PD. 2013. In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to beta-lactams. PLoS One 8:e82653. https://doi.org/10.1371/journal.pone.0082653
-
(2013)
PLoS One
, vol.8
-
-
Fouhy, F.1
O'Connell Motherway, M.2
Fitzgerald, G.F.3
Ross, R.P.4
Stanton, C.5
van Sinderen, D.6
Cotter, P.D.7
-
18
-
-
84945942210
-
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
-
Milani C, Lugli GA, Duranti S, Turroni F, Mancabelli L, Ferrario C, Mangifesta M, Hevia A, Viappiani A, Scholz M, Arioli S, Sanchez B, Lane J, Ward DV, Hickey R, Mora D, Segata N, Margolles A, van Sinderen D, Ventura M. 2015. Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut. Sci Rep 5:15782. https://doi.org/10.1038/srep15782
-
(2015)
Sci Rep
, vol.5
, pp. 15782
-
-
Milani, C.1
Lugli, G.A.2
Duranti, S.3
Turroni, F.4
Mancabelli, L.5
Ferrario, C.6
Mangifesta, M.7
Hevia, A.8
Viappiani, A.9
Scholz, M.10
Arioli, S.11
Sanchez, B.12
Lane, J.13
Ward, D.V.14
Hickey, R.15
Mora, D.16
Segata, N.17
Margolles, A.18
van Sinderen, D.19
Ventura, M.20
more..
-
19
-
-
84879824186
-
Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon
-
Milani C, Duranti S, Lugli GA, Bottacini F, Strati F, Arioli S, Foroni E, Turroni F, van Sinderen D, Ventura M. 2013. Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon. Appl Environ Microbiol 79:4304-4315. https://doi.org/10.1128/AEM.00984-13
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 4304-4315
-
-
Milani, C.1
Duranti, S.2
Lugli, G.A.3
Bottacini, F.4
Strati, F.5
Arioli, S.6
Foroni, E.7
Turroni, F.8
van Sinderen, D.9
Ventura, M.10
-
20
-
-
77952265531
-
Genetic basis of tetracycline resistance in Bifidobacterium animalis subsp. lactis
-
Gueimonde M, Florez AB, van Hoek AH, Stuer-Lauridsen B, Stroman P, de los Reyes-Gavilan CG, Margolles A. 2010. Genetic basis of tetracycline resistance in Bifidobacterium animalis subsp. lactis. Appl Environ Microbiol 76:3364-3369. https://doi.org/10.1128/AEM.03096-09
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3364-3369
-
-
Gueimonde, M.1
Florez, A.B.2
van Hoek, A.H.3
Stuer-Lauridsen, B.4
Stroman, P.5
de los Reyes-Gavilan, C.G.6
Margolles, A.7
-
21
-
-
33745828696
-
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
-
Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, Surovcik K, Meinicke P, Merkl R. 2006. Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinformatics 7:142. https://doi.org/10.1186/1471-2105-7-142
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 142
-
-
Waack, S.1
Keller, O.2
Asper, R.3
Brodag, T.4
Damm, C.5
Fricke, W.F.6
Surovcik, K.7
Meinicke, P.8
Merkl, R.9
-
23
-
-
84866895877
-
Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria
-
Ventura M, Turroni F, Motherway MO, MacSharry J, van Sinderen D. 2012. Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol 20:467-476. https://doi.org/10.1016/j.tim.2012.07.002
-
(2012)
Trends Microbiol
, vol.20
, pp. 467-476
-
-
Ventura, M.1
Turroni, F.2
Motherway, M.O.3
MacSharry, J.4
van Sinderen, D.5
-
24
-
-
84892801172
-
Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective
-
Turroni F, Ventura M, Butto LF, Duranti S, O'Toole PW, Motherway MO, van Sinderen D. 2014. Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective. Cell Mol Life Sci 71:183-203. https://doi.org/10.1007/s00018-013-1318-0
-
(2014)
Cell Mol Life Sci
, vol.71
, pp. 183-203
-
-
Turroni, F.1
Ventura, M.2
Butto, L.F.3
Duranti, S.4
O'Toole, P.W.5
Motherway, M.O.6
van Sinderen, D.7
-
25
-
-
84906826485
-
Diversity, ecology and intestinal function of bifidobacteria
-
Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M. 2014. Diversity, ecology and intestinal function of bifidobacteria. Microb Cell Fact 13(Suppl 1):S4. https://doi.org/10.1186/1475-2859-13-S1-S4
-
(2014)
Microb Cell Fact
, vol.13
-
-
Bottacini, F.1
Ventura, M.2
van Sinderen, D.3
O'Connell Motherway, M.4
-
26
-
-
84863871551
-
Microbial degradation of complex carbohydrates in the gut
-
Flint HJ, Scott KP, Duncan SH, Louis P, Forano E. 2012. Microbial degradation of complex carbohydrates in the gut. Gut Microbes 3:289-306. https://doi.org/10.4161/gmic.19897
-
(2012)
Gut Microbes
, vol.3
, pp. 289-306
-
-
Flint, H.J.1
Scott, K.P.2
Duncan, S.H.3
Louis, P.4
Forano, E.5
-
27
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Human Microbiome Project Consortium. 2012. Structure, function and diversity of the healthy human microbiome. Nature 486:207-214. https://doi.org/10.1038/nature11234
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
28
-
-
84955480509
-
Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children
-
Korpela K, Salonen A, Virta LJ, Kekkonen RA, Forslund K, Bork P, de Vos WM. 2016. Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children. Nat Commun 7:10410. https://doi.org/10.1038/ncomms10410
-
(2016)
Nat Commun
, vol.7
, pp. 10410
-
-
Korpela, K.1
Salonen, A.2
Virta, L.J.3
Kekkonen, R.A.4
Forslund, K.5
Bork, P.6
de Vos, W.M.7
-
29
-
-
85027951890
-
Transition from infant-to adult-like gut microbiota
-
Avershina E, Lundgard K, Sekelja M, Dotterud C, Storro O, Oien T, Johnsen R, Rudi K. 2016. Transition from infant-to adult-like gut microbiota. Environ Microbiol 18:2226-2236. https://doi.org/10.1111/1462-2920.13248
-
(2016)
Environ Microbiol
, vol.18
, pp. 2226-2236
-
-
Avershina, E.1
Lundgard, K.2
Sekelja, M.3
Dotterud, C.4
Storro, O.5
Oien, T.6
Johnsen, R.7
Rudi, K.8
-
30
-
-
84977142248
-
Early-life events, including mode of delivery and type of feeding, siblings and gender, shape the developing gut microbiota
-
Martin R, Makino H, Cetinyurek Yavuz A, Ben-Amor K, Roelofs M, Ishikawa E, Kubota H, Swinkels S, Sakai T, Oishi K, Kushiro A, Knol J. 2016. Early-life events, including mode of delivery and type of feeding, siblings and gender, shape the developing gut microbiota. PLoS One 11: e0158498. https://doi.org/10.1371/journal.pone.0158498
-
(2016)
PLoS One
, vol.11
-
-
Martin, R.1
Makino, H.2
Cetinyurek Yavuz, A.3
Ben-Amor, K.4
Roelofs, M.5
Ishikawa, E.6
Kubota, H.7
Swinkels, S.8
Sakai, T.9
Oishi, K.10
Kushiro, A.11
Knol, J.12
-
31
-
-
84880286399
-
Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol
-
Milani C, Hevia A, Foroni E, Duranti S, Turroni F, Lugli GA, Sanchez B, Martin R, Gueimonde M, van Sinderen D, Margolles A, Ventura M. 2013. Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol. PLoS One 8:e68739. https://doi.org/10.1371/journal.pone.0068739
-
(2013)
PLoS One
, vol.8
-
-
Milani, C.1
Hevia, A.2
Foroni, E.3
Duranti, S.4
Turroni, F.5
Lugli, G.A.6
Sanchez, B.7
Martin, R.8
Gueimonde, M.9
van Sinderen, D.10
Margolles, A.11
Ventura, M.12
-
32
-
-
84943327494
-
Exploring vertical transmission of bifidobacteria from mother to child
-
Milani C, Mancabelli L, Lugli GA, Duranti S, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Ferretti P, Gorfer V, Tett A, Segata N, van Sinderen D, Ventura M. 2015. Exploring vertical transmission of bifidobacteria from mother to child. Appl Environ Microbiol 81:7078-7087. https://doi.org/10.1128/AEM.02037-15
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 7078-7087
-
-
Milani, C.1
Mancabelli, L.2
Lugli, G.A.3
Duranti, S.4
Turroni, F.5
Ferrario, C.6
Mangifesta, M.7
Viappiani, A.8
Ferretti, P.9
Gorfer, V.10
Tett, A.11
Segata, N.12
van Sinderen, D.13
Ventura, M.14
-
33
-
-
84983056926
-
Microbial changes during pregnancy, birth, and infancy
-
Nuriel-Ohayon M, Neuman H, Koren O. 2016. Microbial changes during pregnancy, birth, and infancy. Front Microbiol 7:1031
-
(2016)
Front Microbiol
, vol.7
, pp. 1031
-
-
Nuriel-Ohayon, M.1
Neuman, H.2
Koren, O.3
-
34
-
-
78049504118
-
Examination of faecal Bifidobacterium populations in breast-and formula-fed infants during the first 18 months of life
-
Roger LC, Costabile A, Holland DT, Hoyles L, McCartney AL. 2010. Examination of faecal Bifidobacterium populations in breast-and formula-fed infants during the first 18 months of life. Microbiology 156:3329-3341. https://doi.org/10.1099/mic.0.043224-0
-
(2010)
Microbiology
, vol.156
, pp. 3329-3341
-
-
Roger, L.C.1
Costabile, A.2
Holland, D.T.3
Hoyles, L.4
McCartney, A.L.5
-
35
-
-
84922297921
-
Bifidobacterium bifidum as an example of a specialized human gut commensal
-
Turroni F, Duranti S, Bottacini F, Guglielmetti S, Van Sinderen D, Ventura M. 2014. Bifidobacterium bifidum as an example of a specialized human gut commensal. Front Microbiol 5:437
-
(2014)
Front Microbiol
, vol.5
, pp. 437
-
-
Turroni, F.1
Duranti, S.2
Bottacini, F.3
Guglielmetti, S.4
Van Sinderen, D.5
Ventura, M.6
-
36
-
-
84975064151
-
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
-
Yassour M, Vatanen T, Siljander H, Hamalainen AM, Harkonen T, Ryhanen SJ, Franzosa EA, Vlamakis H, Huttenhower C, Gevers D, Lander ES, Knip M, DIABIMMUNE Study Group, Xavier RJ. 2016. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Sci Transl Med 8:343ra381. https://doi.org/10.1126/scitranslmed.aad0917
-
(2016)
Sci Transl Med
, vol.8
-
-
Yassour, M.1
Vatanen, T.2
Siljander, H.3
Hamalainen, A.M.4
Harkonen, T.5
Ryhanen, S.J.6
Franzosa, E.A.7
Vlamakis, H.8
Huttenhower, C.9
Gevers, D.10
Lander, E.S.11
Knip, M.12
Xavier, R.J.13
-
37
-
-
80052494524
-
Parenteral antibiotics reduce bifidobacteria colonization and diversity in neonates
-
Hussey S, Wall R, Gruffman E, O'Sullivan L, Ryan CA, Murphy B, Fitzgerald G, Stanton C, Ross RP. 2011. Parenteral antibiotics reduce bifidobacteria colonization and diversity in neonates. Int J Microbiol 2011:130574. https://doi.org/10.1155/2011/130574
-
(2011)
Int J Microbiol
, vol.2011
-
-
Hussey, S.1
Wall, R.2
Gruffman, E.3
O'Sullivan, L.4
Ryan, C.A.5
Murphy, B.6
Fitzgerald, G.7
Stanton, C.8
Ross, R.P.9
-
38
-
-
84938399395
-
Antibiotics and the developing infant gut microbiota and resistome
-
Gibson MK, Crofts TS, Dantas G. 2015. Antibiotics and the developing infant gut microbiota and resistome. Curr Opin Microbiol 27:51-56. https://doi.org/10.1016/j.mib.2015.07.007
-
(2015)
Curr Opin Microbiol
, vol.27
, pp. 51-56
-
-
Gibson, M.K.1
Crofts, T.S.2
Dantas, G.3
-
40
-
-
84963652891
-
Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis
-
Duranti S, Milani C, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Sanchez B, Margolles A, van Sinderen D, Ventura M. 2016. Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis. Sci Rep 6:23971. https://doi.org/10.1038/srep23971
-
(2016)
Sci Rep
, vol.6
, pp. 23971
-
-
Duranti, S.1
Milani, C.2
Lugli, G.A.3
Mancabelli, L.4
Turroni, F.5
Ferrario, C.6
Mangifesta, M.7
Viappiani, A.8
Sanchez, B.9
Margolles, A.10
van Sinderen, D.11
Ventura, M.12
-
41
-
-
84937073639
-
Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum
-
Duranti S, Milani C, Lugli GA, Turroni F, Mancabelli L, Sanchez B, Ferrario C, Viappiani A, Mangifesta M, Mancino W, Gueimonde M, Margolles A, van Sinderen D, Ventura M. 2015. Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum. Environ Microbiol 17:2515-2531. https://doi.org/10.1111/1462-2920.12743
-
(2015)
Environ Microbiol
, vol.17
, pp. 2515-2531
-
-
Duranti, S.1
Milani, C.2
Lugli, G.A.3
Turroni, F.4
Mancabelli, L.5
Sanchez, B.6
Ferrario, C.7
Viappiani, A.8
Mangifesta, M.9
Mancino, W.10
Gueimonde, M.11
Margolles, A.12
van Sinderen, D.13
Ventura, M.14
-
42
-
-
84899476585
-
Comparative genomics of the Bifidobacterium breve taxon
-
Bottacini F, O'Connell Motherway M, Kuczynski J, O'Connell KJ, Serafini F, Duranti S, Milani C, Turroni F, Lugli GA, Zomer A, Zhurina D, Riedel C, Ventura M, van Sinderen D. 2014. Comparative genomics of the Bifidobacterium breve taxon. BMC Genomics 15:170. https://doi.org/10.1186/1471-2164-15-170
-
(2014)
BMC Genomics
, vol.15
, pp. 170
-
-
Bottacini, F.1
O'Connell Motherway, M.2
Kuczynski, J.3
O'Connell, K.J.4
Serafini, F.5
Duranti, S.6
Milani, C.7
Turroni, F.8
Lugli, G.A.9
Zomer, A.10
Zhurina, D.11
Riedel, C.12
Ventura, M.13
van Sinderen, D.14
-
43
-
-
84945187639
-
Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems
-
O'Callaghan A, Bottacini F, O'Connell Motherway M, van Sinderen D. 2015. Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems. BMC Genomics 16:832. https://doi.org/10.1186/s12864-015-1968-4
-
(2015)
BMC Genomics
, vol.16
, pp. 832
-
-
O'Callaghan, A.1
Bottacini, F.2
O'Connell Motherway, M.3
van Sinderen, D.4
-
44
-
-
84957921950
-
Genomics of the genus Bifidobacterium reveals species-specific adaptation to the glycan-rich gut environment
-
Milani C, Turroni F, Duranti S, Lugli GA, Mancabelli L, Ferrario C, van Sinderen D, Ventura M. 2015. Genomics of the genus Bifidobacterium reveals species-specific adaptation to the glycan-rich gut environment. Appl Environ Microbiol 82:980-991. https://doi.org/10.1128/AEM.03500-15
-
(2015)
Appl Environ Microbiol
, vol.82
, pp. 980-991
-
-
Milani, C.1
Turroni, F.2
Duranti, S.3
Lugli, G.A.4
Mancabelli, L.5
Ferrario, C.6
van Sinderen, D.7
Ventura, M.8
-
45
-
-
84855167751
-
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
-
Zhao Y, Tang H, Ye Y. 2012. RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinformatics 28:125-126. https://doi.org/10.1093/bioinformatics/btr595
-
(2012)
Bioinformatics
, vol.28
, pp. 125-126
-
-
Zhao, Y.1
Tang, H.2
Ye, Y.3
-
46
-
-
84961231203
-
MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation
-
Lugli GA, Milani C, Mancabelli L, van Sinderen D, Ventura M. 2016. MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation. FEMS Microbiol Lett 363:fnw049. https://doi.org/10.1093/femsle/fnw049
-
(2016)
FEMS Microbiol Lett
, vol.363
-
-
Lugli, G.A.1
Milani, C.2
Mancabelli, L.3
van Sinderen, D.4
Ventura, M.5
-
47
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. https://doi.org/10.1093/bioinformatics/btp324
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
48
-
-
68549104404
-
1000 Genome Project Data Processing Subgroup. 2009 The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009 The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079
-
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
49
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357-359. https://doi.org/10.1038/nmeth.1923
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
50
-
-
84928987900
-
HTSeq-a Python framework to work with high-throughput sequencing data
-
Anders S, Pyl PT, Huber W. 2015. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31:166-169. https://doi.org/10.1093/bioinformatics/btu638
-
(2015)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
51
-
-
84861652455
-
Milk and milk products-determination of the minimal inhibitory concentration (MIC) of antibiotics applicable to bifidobacteria and non-enterococcal lactic acid bacteria (LAB)
-
ISO 10932:2010 (IDF 223:2010). ISO, Geneva, Switzerland
-
International Organization for Standardization (ISO). 2010. Milk and milk products-determination of the minimal inhibitory concentration (MIC) of antibiotics applicable to bifidobacteria and non-enterococcal lactic acid bacteria (LAB). ISO 10932:2010 (IDF 223:2010). ISO, Geneva, Switzerland
-
(2010)
-
-
|