Complete genome sequence of KPC-producing Klebsiella pneumoniae strain CAV1193

Genome Announcements

Volumn 4, Issue 1, 2016, Pages

  Sheppard, Anna E ^a   Stoesser, Nicole ^a   Sebra, Robert ^b   Kasarskis, Andrew ^b   Deikus, Gintaras ^b   Anson, Luke ^a   Sarah Walker, A ^a   Peto, Tim E ^a   Crook, Derrick W ^a   Mathers, Amy J ^c  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF VIRGINIA HEALTH SYSTEM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85009959364     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01649-15     Document Type: Article

References (8)

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2. Kitchel B, Rasheed JK, Patel JB, Srinivasan A, Navon-Venezia S, Carmeli Y, Brolund A, Giske CG. 2009. Molecular epidemiology of KPCproducing Klebsiella pneumoniae isolates in the United States: clonal expansion of multilocus sequence type 258. Antimicrob Agents Chemother 53: 3365-3370. http://dx.doi.org/10.1128/AAC.00126-09.
3. Deleo FR, Chen L, Porcella SF, Martens CA, Kobayashi SD, Porter AR, Chavda KD, Jacobs MR, Mathema B, Olsen RJ, Bonomo RA, Musser JM, Kreiswirth BN. 2014. Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae. Proc Natl Acad Sci USA 111:4988-4993. http://dx.doi.org/10.1073/pnas.1321364111.
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5. Mathers AJ, Stoesser N, Sheppard AE, Pankhurst L, Giess A, Yeh AJ, Didelot X, Turner SD, Sebra R, Kasarskis A, Peto T, Crook D, Sifri CD. 2015 Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing. Antimicrob Agents Chemother 59:1656-1663. http://dx.doi.org/10.1128/AAC.04292-14.
6. Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv:1303.3997v1301 [q-bio.GN]. http://arxiv.org/abs/1303.3997.
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8. Coil D, Jospin G, Darling AE. 2015. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics 31:587-589. http://dx.doi.org/10.1093/bioinformatics/btu661.