-
1
-
-
33947304181
-
Overview of BioCreAtIvE: Critical assessment of information extraction for biology
-
Hirschman, L., Yeh, A., Blaschke, C. and Valencia, A. (2005) Overview of BioCreAtIvE: critical assessment of information extraction for biology. BMC Bioinformatics, 6, S1.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S1
-
-
Hirschman, L.1
Yeh, A.2
Blaschke, C.3
Valencia, A.4
-
2
-
-
51049084462
-
Evaluation of text-mining systems for biology: Overview of the Second BioCreative community challenge
-
Krallinger, M., Morgan, A., Smith, L. et al. (2008) Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge. Genome Biol., 9, S1.
-
(2008)
Genome Biol.
, vol.9
, pp. S1
-
-
Krallinger, M.1
Morgan, A.2
Smith, L.3
-
3
-
-
77955441742
-
An Overview of BioCreative II.5
-
Leitner, F., Mardis, S., Krallinger, M. et al. (2010) An Overview of BioCreative II.5. IEEE/ACM Trans. Comput. Biol. Bioinformatics, 7, 385-399.
-
(2010)
IEEE/ACM Trans. Comput. Biol. Bioinformatics
, vol.7
, pp. 385-399
-
-
Leitner, F.1
Mardis, S.2
Krallinger, M.3
-
4
-
-
80053414432
-
Overview of the BioCreative III Workshop
-
Arighi, C., Lu, Z., Krallinger, M. et al. (2011) Overview of the BioCreative III Workshop. BMC Bioinformatics, 12, S1.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S1
-
-
Arighi, C.1
Lu, Z.2
Krallinger, M.3
-
5
-
-
84876501269
-
Editorial: BioCreative-2012 Virtual Issue
-
Wu, C. H., Arighi, C. N., Cohen, K. B. et al. (2012) Editorial: BioCreative-2012 Virtual Issue. Database (Oxford), 2014, bas049.
-
(2012)
Database (Oxford)
, vol.2014
, pp. bas049
-
-
Wu, C.H.1
Arighi, C.N.2
Cohen, K.B.3
-
6
-
-
84862261069
-
Text mining for the biocuration workflow
-
Hirschman, L., Burns, G. A., Krallinger, M. et al. (2012) Text mining for the biocuration workflow. Database (Oxford), 2012, bas020.
-
(2012)
Database (Oxford)
, vol.2012
, pp. bas020
-
-
Hirschman, L.1
Burns, G.A.2
Krallinger, M.3
-
7
-
-
84876462011
-
Biocuration workflows and text mining: Overview of the BioCreative 2012 Workshop Track II
-
Lu, Z. and Hirschman, L. (2012) Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II. Database, 2012, bas043.
-
(2012)
Database
, vol.2012
, pp. bas043
-
-
Lu, Z.1
Hirschman, L.2
-
8
-
-
80053393894
-
BioCreative III interactive task: An overview
-
Arighi, C, Roberts, P., Agarwal, S. et al. (2011) BioCreative III interactive task: an overview. BMC Bioinformatics, 12, S4.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S4
-
-
Arighi, C.1
Roberts, P.2
Agarwal, S.3
-
9
-
-
84879330505
-
An overview of the BioCreative 2012 Workshop Track III: Interactive text mining task
-
Arighi, C, Carterette, K. B., Cohen, K. B. et al. (2012) An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford), 2012, bas056.
-
(2012)
Database (Oxford)
, vol.2012
, pp. bas056
-
-
Arighi, C.1
Carterette, K.B.2
Cohen, K.B.3
-
10
-
-
84938262566
-
Ease of adoption of clinical natural language processing software: An evaluation of five systems. J
-
Zheng, K., Vydiswaran, V. G., Liu, Y. et al. (2015) Ease of adoption of clinical natural language processing software: an evaluation of five systems. J. Biomed. Inform., 58, S189-S196.
-
(2015)
Biomed. Inform.
, vol.58
, pp. S189-S196
-
-
Zheng, K.1
Vydiswaran, V.G.2
Liu, Y.3
-
11
-
-
85009904143
-
BioCreative V BioC Track Overview: Collaborative Biocurator Assistant Task for BioGRID
-
2016-0059. R2
-
Kim, S., Dogan, R. I., Chatr-aryamontri, A. et al. (2016) BioCreative V BioC Track Overview: Collaborative Biocurator Assistant Task for BioGRID. Database, 2016-0059. R2.
-
(2016)
Database
-
-
Kim, S.1
Dogan, R.I.2
Chatr-Aryamontri, A.3
-
12
-
-
84892753494
-
BioC: A minimalist approach to interoperability for biomedical text processing
-
Comeau, D. C, Dogan, I. R., Ciccarese, P. et al. (2013) BioC: a minimalist approach to interoperability for biomedical text processing. Database, 18, bat064.
-
(2013)
Database
, vol.18
, pp. bat064
-
-
Comeau, D.C.1
Dogan, I.R.2
Ciccarese, P.3
-
13
-
-
84953291757
-
BioGRID: A resource for studying biological interactions in yeast
-
Oughtred, R., Chatr-Aryamontri, A., Breitkreutz, B. J. et al. (2016) BioGRID: a resource for studying biological interactions in yeast. Cold Spring Harbor Protocols, 2016, pdb.top080754.
-
(2016)
Cold Spring Harbor Protocols
, vol.2016
-
-
Oughtred, R.1
Chatr-Aryamontri, A.2
Breitkreutz, B.J.3
-
14
-
-
0001859044
-
A technique for the measurement of attitudes
-
Likert, R. (1932) A technique for the measurement of attitudes. Arch Psychol, 22, 55.
-
(1932)
Arch Psychol
, vol.22
, pp. 55
-
-
Likert, R.1
-
15
-
-
84923264029
-
BioCreative IV interactive task
-
Bethesda, MD
-
Matis-Mitchell, S., Roberts, P., Tudor, CO. and Arighi, C. N. (2013) BioCreative IV interactive task. In: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, MD, Vol. 1, pp. 190-203.
-
(2013)
Proceedings of the Fourth BioCreative Challenge Evaluation Workshop
, vol.1
, pp. 190-203
-
-
Matis-Mitchell, S.1
Roberts, P.2
Tudor, C.O.3
Arighi, C.N.4
-
16
-
-
48849113355
-
The system usability scale (SUS): An empirical evaluation
-
Bangor, A., Kortum, P. and Miller J. (2008) The system usability scale (SUS): an empirical evaluation. Int. J. Hum.-Comp. Interact., 24, 574-594.
-
(2008)
Int. J. Hum.-Comp. Interact.
, vol.24
, pp. 574-594
-
-
Bangor, A.1
Kortum, P.2
Miller, J.3
-
17
-
-
85052188662
-
EXTRACT: Interactive extraction of environment metadata and term suggestion for metagenomic sample annotation
-
Pafilis, E., Buttigieg, P. L., Ferrell, B. et al. (2016) EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. Database (Oxford), baw005.
-
(2016)
Database (Oxford)
, pp. baw005
-
-
Pafilis, E.1
Buttigieg, P.L.2
Ferrell, B.3
-
18
-
-
85009878829
-
Biocuration of microRNAs in idiopathic pulmonary fibrosis
-
Balderas-Martinez, Y. I., Rinaldi, F., Contreras, G. et al. (2015) Biocuration of microRNAs in idiopathic pulmonary fibrosis. In: Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, 435-441.
-
(2015)
Proceedings of the Fifth BioCreative Challenge Evaluation Workshop
, pp. 435-441
-
-
Balderas-Martinez, Y.I.1
Rinaldi, F.2
Contreras, G.3
-
19
-
-
85016163032
-
Argo: Enabling the development of bespoke workflows and services for disease annotation
-
Batista-Navarro, R., Carter J. and Ananiadou, S. (2016) Argo: enabling the development of bespoke workflows and services for disease annotation. Database (Oxford), 2016, baw066.
-
(2016)
Database (Oxford)
, vol.2016
, pp. baw066
-
-
Batista-Navarro, R.1
Carter, J.2
Ananiadou, S.3
-
20
-
-
85003055274
-
Textmining-assisted biocuration workflows in Argo
-
Rak, R., Batista-Navarro, R. T., Rowley, A. et al. (2014) Textmining-assisted biocuration workflows in Argo. Database, 2014, bau070.
-
(2014)
Database
, vol.2014
, pp. bau070
-
-
Rak, R.1
Batista-Navarro, R.T.2
Rowley, A.3
-
21
-
-
85009854787
-
MET network in PubMed: A text-mined network visualization and curation system
-
Dai, H. J., Su, C. H., Lai, P. T. et al. (2016) MET network in PubMed: a text-mined network visualization and curation system. Database (Oxford), 2016, baw090.
-
(2016)
Database (Oxford)
, vol.2016
, pp. baw090
-
-
Dai, H.J.1
Su, C.H.2
Lai, P.T.3
-
22
-
-
85009124421
-
Mining clinical attributes of genomic variants through assisted literature curation in Egas
-
Matos, S., Campos, D., Pinho, R. et al. (2016) Mining clinical attributes of genomic variants through assisted literature curation in Egas. Database (Oxford), 2016, baw096.
-
(2016)
Database (Oxford)
, vol.2016
, pp. baw096
-
-
Matos, S.1
Campos, D.2
Pinho, R.3
-
23
-
-
84987673679
-
Egas: A collaborative and interactive document curation platform
-
Campos, D., Lourenco J., Matos, S. and Oliveira J. L. (2014) Egas: a collaborative and interactive document curation platform. Database (Oxford), 2014, bau048.
-
(2014)
Database (Oxford)
, vol.2014
, pp. bau048
-
-
Campos, D.1
Lourenco, J.2
Matos, S.3
Oliveira, J.L.4
-
24
-
-
85047781481
-
An integrated text mining system based on network analysis for knowledge discovery of human gene-disease associations (GenDisFinder)
-
Subramani, S. and Natarajan J. (2015) An integrated text mining system based on network analysis for knowledge discovery of human gene-disease associations (GenDisFinder). Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, 427-434.
-
(2015)
Proceedings of the Fifth BioCreative Challenge Evaluation Workshop
, pp. 427-434
-
-
Subramani, S.1
Natarajan, J.2
-
26
-
-
84976470576
-
Beyond accuracy: Creating interoperable and scalable text mining web services
-
Wei, C. H., Leaman, R. and Lu, Z. (2016) Beyond accuracy: creating interoperable and scalable text mining web services. Bioinformatics, 32, 1907-1910.
-
(2016)
Bioinformatics
, vol.32
, pp. 1907-1910
-
-
Wei, C.H.1
Leaman, R.2
Lu, Z.3
-
27
-
-
84938816359
-
Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows
-
Fu, X., Batista-Navarro, R., Rak, R. and Ananiadou, S. (2015) Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows. J. Biomed. Semant., 6, 8.
-
(2015)
J. Biomed. Semant.
, vol.6
, pp. 8
-
-
Fu, X.1
Batista-Navarro, R.2
Rak, R.3
Ananiadou, S.4
-
28
-
-
84891837451
-
The Human Gene Mutation Database: Building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine
-
Stenson, P. D., Mort, M., Ball, E. V. et al. (2014) The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine. Hum. Genet., 133, 1-9.
-
(2014)
Hum. Genet.
, vol.133
, pp. 1-9
-
-
Stenson, P.D.1
Mort, M.2
Ball, E.V.3
-
29
-
-
84879162734
-
The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text
-
Pafilis, E., Frankild, S. P., Fanini, L. et al. (2013) The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text. PLoS One, 8, e65390.
-
(2013)
PLoS One
, vol.8
, pp. e65390
-
-
Pafilis, E.1
Frankild, S.P.2
Fanini, L.3
-
30
-
-
84941662911
-
ENVIRONMENTS and EOL: Identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life
-
Pafilis, E., Frankild, S. P., Schnetzer J. et al. (2015) ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life. Bioinformatics, 31, 1872-1874.
-
(2015)
Bioinformatics
, vol.31
, pp. 1872-1874
-
-
Pafilis, E.1
Frankild, S.P.2
Schnetzer, J.3
-
31
-
-
84923884337
-
DISEASES: Text mining and data integration of disease-gene associations
-
Pletscher-Frankild, S., Palleja, A., Tsafou, K.,. et al. (2015) DISEASES: text mining and data integration of disease-gene associations. Methods, 74, 83-89.
-
(2015)
Methods
, vol.74
, pp. 83-89
-
-
Pletscher-Frankild, S.1
Palleja, A.2
Tsafou, K.3
-
32
-
-
84941717906
-
Comprehensive comparison of large-scale tissue expression datasets
-
Santos, A., Tsafou, K., Stolte, C. et al. (2015) Comprehensive comparison of large-scale tissue expression datasets. Peer J., 3, e1054.
-
(2015)
Peer J.
, vol.3
, pp. e1054
-
-
Santos, A.1
Tsafou, K.2
Stolte, C.3
-
33
-
-
84895506825
-
ProNormz-an integrated approach for human proteins and protein kinases normalization
-
Subramani, S., Raja, K. and Natarajan, J. (2014) ProNormz-an integrated approach for human proteins and protein kinases normalization. J. Biomed. Inform., 47, 131-138.
-
(2014)
J. Biomed. Inform.
, vol.47
, pp. 131-138
-
-
Subramani, S.1
Raja, K.2
Natarajan, J.3
-
34
-
-
84976874666
-
RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond
-
Gama-Castro, S., Salgado, H., Santos-Zavaleta, A. et al. (2016) RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. Nucleic Acids Res., 44, D133-D143.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D133-D143
-
-
Gama-Castro, S.1
Salgado, H.2
Santos-Zavaleta, A.3
-
35
-
-
84987677359
-
Web services-based text-mining demonstrates broad impacts for interoperability and process simplification
-
Wiegers, T. C., Davis, A. P. and Mattingly, C. J. (2014) Web services-based text-mining demonstrates broad impacts for interoperability and process simplification. Database (Oxford), 2014, bau050.
-
(2014)
Database (Oxford)
, vol.2014
, pp. bau050
-
-
Wiegers, T.C.1
Davis, A.P.2
Mattingly, C.J.3
-
36
-
-
84943818431
-
The Disease Ontology: Fostering interoperability between biological and clinical human disease-related data
-
Schriml, L. M. and Mitraka, E. (2015) The Disease Ontology: fostering interoperability between biological and clinical human disease-related data. Mamm Genome, 26, 584-589.
-
(2015)
Mamm Genome
, vol.26
, pp. 584-589
-
-
Schriml, L.M.1
Mitraka, E.2
-
37
-
-
84943187305
-
Scaling drug indication curation through crowdsourcing
-
Khare, R., Burger, J. D., Aberdeen, J. S. et al. (2015) Scaling drug indication curation through crowdsourcing. Database (Oxford), 2015, bav016.
-
(2015)
Database (Oxford)
, vol.2015
, pp. bav016
-
-
Khare, R.1
Burger, J.D.2
Aberdeen, J.S.3
|