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Volumn 15, Issue , 2017, Pages 112-126

Unbiased Identification of Blood-based Biomarkers for Pulmonary Tuberculosis by Modeling and Mining Molecular Interaction Networks

Author keywords

Biomarkers; Computational medicine; Diagnostics; Network biology; Tuberculosis

Indexed keywords

ADM PROTEIN; BIOLOGICAL MARKER; CAT EYE SYNDROME CHROMOSOME REGION CANDIDATE 6 PROTEIN; FC FRAGMENT OF IGE RECEPTOR IA; FLUOROURACIL; HEXOKINASE; HUMAN LEUKOTRIENE B4 OMEGA HYDROXYLASE; IFFI44L PROTEIN; ONCOSTATIN M; PEPTIDES AND PROTEINS; PROTEIN BCL 6; RAB13 PROTEIN; RB BINDING PROTEIN 8; SECRETORY LEUKOCYTE PROTEINASE INHIBITOR; SMARCD3 PROTEIN; TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 10; TROPONIN I; UNCLASSIFIED DRUG;

EID: 85008645140     PISSN: None     EISSN: 23523964     Source Type: Journal    
DOI: 10.1016/j.ebiom.2016.12.009     Document Type: Article
Times cited : (74)

References (51)
  • 1
    • 84867619205 scopus 로고    scopus 로고
    • Innate immune gene polymorphisms in tuberculosis
    • Azad, A.K., Sadee, W., Schlesinger, L.S., Innate immune gene polymorphisms in tuberculosis. Infect. Immun. 80:10 (2012), 3343–3359.
    • (2012) Infect. Immun. , vol.80 , Issue.10 , pp. 3343-3359
    • Azad, A.K.1    Sadee, W.2    Schlesinger, L.S.3
  • 3
    • 84961146311 scopus 로고    scopus 로고
    • The application of transcriptional blood signatures to enhance our understanding of the host response to infection: the example of tuberculosis
    • Blankley, S., Berry, M.P.R., Graham, C.M., Bloom, C.I., Lipman, M., O'Garra, A., The application of transcriptional blood signatures to enhance our understanding of the host response to infection: the example of tuberculosis. Philos. Trans. R. Soc. Lond. B Biol. Sci., 369(1645), 2014, 20130427.
    • (2014) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.369 , Issue.1645 , pp. 20130427
    • Blankley, S.1    Berry, M.P.R.2    Graham, C.M.3    Bloom, C.I.4    Lipman, M.5    O'Garra, A.6
  • 7
    • 84923164028 scopus 로고    scopus 로고
    • The human immune response to tuberculosis and its treatment: a view from the blood
    • Cliff, J.M., Kaufmann, S.H., McShane, H., van Helden, P., O'Garra, A., The human immune response to tuberculosis and its treatment: a view from the blood. Immunol. Rev. 264:1 (2015), 88–102.
    • (2015) Immunol. Rev. , vol.264 , Issue.1 , pp. 88-102
    • Cliff, J.M.1    Kaufmann, S.H.2    McShane, H.3    van Helden, P.4    O'Garra, A.5
  • 8
    • 67650932256 scopus 로고    scopus 로고
    • Cell mediated immune responses in tuberculosis
    • Cooper, A.M., Cell mediated immune responses in tuberculosis. Annu. Rev. Immunol. 27 (2009), 393–422.
    • (2009) Annu. Rev. Immunol. , vol.27 , pp. 393-422
    • Cooper, A.M.1
  • 9
    • 84924598127 scopus 로고    scopus 로고
    • Duality of lipid mediators in host response against Mycobacterium tuberculosis: good cop, bad cop
    • Dietzold, J., Gopalakrishnan, A., Salgame, P., Duality of lipid mediators in host response against Mycobacterium tuberculosis: good cop, bad cop. F1000prime Reports, 2015, 7.
    • (2015) F1000prime Reports , pp. 7
    • Dietzold, J.1    Gopalakrishnan, A.2    Salgame, P.3
  • 11
    • 84910056128 scopus 로고    scopus 로고
    • Diagnosis of tuberculosis pleurisy with adenosine deaminase (ADA): a systematic review and meta-analysis
    • Gui, X., Xiao, H., Diagnosis of tuberculosis pleurisy with adenosine deaminase (ADA): a systematic review and meta-analysis. Int. J. Clin. Exp. Med. 7:10 (2014), 3126–3135.
    • (2014) Int. J. Clin. Exp. Med. , vol.7 , Issue.10 , pp. 3126-3135
    • Gui, X.1    Xiao, H.2
  • 13
    • 79953875948 scopus 로고    scopus 로고
    • Clinical application and limitations of interferon-gamma release assays for the diagnosis of latent tuberculosis infection
    • Herrera, V., Perry, S., Parsonnet, J., Banaei, N., Clinical application and limitations of interferon-gamma release assays for the diagnosis of latent tuberculosis infection. Clin. Infect. Dis. 52:8 (2011), 1031–1037.
    • (2011) Clin. Infect. Dis. , vol.52 , Issue.8 , pp. 1031-1037
    • Herrera, V.1    Perry, S.2    Parsonnet, J.3    Banaei, N.4
  • 14
    • 84884179172 scopus 로고    scopus 로고
    • A helicopter perspective on TB biomarkers: pathway and process based analysis of gene expression data provides new insight into TB pathogenesis
    • Joosten, S.A., Fletcher, H.A., Ottenhoff, T.H.M., A helicopter perspective on TB biomarkers: pathway and process based analysis of gene expression data provides new insight into TB pathogenesis. PLoS One, 8(9), 2013, e73230.
    • (2013) PLoS One , vol.8 , Issue.9
    • Joosten, S.A.1    Fletcher, H.A.2    Ottenhoff, T.H.M.3
  • 15
    • 84886613855 scopus 로고    scopus 로고
    • Detection of tuberculosis in HIV-infected and-uninfected African adults using whole blood RNA expression signatures: a case–control study
    • Kaforou, M., Wright, V.J., Oni, T., French, N., Anderson, S.T., Bangani, N., Banwell, C.M., Brent, A.J., Crampin, A.C., Dockrell, H.M., Detection of tuberculosis in HIV-infected and-uninfected African adults using whole blood RNA expression signatures: a case–control study. PLoS Med., 10(10), 2013, e1001538.
    • (2013) PLoS Med. , vol.10 , Issue.10
    • Kaforou, M.1    Wright, V.J.2    Oni, T.3    French, N.4    Anderson, S.T.5    Bangani, N.6    Banwell, C.M.7    Brent, A.J.8    Crampin, A.C.9    Dockrell, H.M.10
  • 16
    • 84876009220 scopus 로고    scopus 로고
    • Interpretation of genomic variants using a unified biological network approach
    • Khurana, E., Fu, Y., Chen, J., Gerstein, M., Interpretation of genomic variants using a unified biological network approach. PLoS Comput. Biol., 9(3), 2013, e1002886.
    • (2013) PLoS Comput. Biol. , vol.9 , Issue.3
    • Khurana, E.1    Fu, Y.2    Chen, J.3    Gerstein, M.4
  • 17
    • 84929692173 scopus 로고    scopus 로고
    • The cancer cell map initiative: defining the hallmark networks of cancer
    • Krogan, N.J., Lippman, S., Agard, D.A., Ashworth, A., Ideker, T., The cancer cell map initiative: defining the hallmark networks of cancer. Mol. Cell 58:4 (2015), 690–698.
    • (2015) Mol. Cell , vol.58 , Issue.4 , pp. 690-698
    • Krogan, N.J.1    Lippman, S.2    Agard, D.A.3    Ashworth, A.4    Ideker, T.5
  • 24
    • 85007538658 scopus 로고    scopus 로고
    • Clash of the Cytokine Titans: counter-regulation of interleukin-1 and type I interferon-mediated inflammatory responses
    • Mayer-Barber, K.D., Yan, B., Clash of the Cytokine Titans: counter-regulation of interleukin-1 and type I interferon-mediated inflammatory responses. Cell. Mol. Immunol., 2016.
    • (2016) Cell. Mol. Immunol.
    • Mayer-Barber, K.D.1    Yan, B.2
  • 25
    • 0037474192 scopus 로고    scopus 로고
    • Guidelines for using the QuantiFERON®-TB test for diagnosing latent Mycobacterium tuberculosis infection
    • Mazurek, G.H., Villarino, M.E., Guidelines for using the QuantiFERON®-TB test for diagnosing latent Mycobacterium tuberculosis infection. Morb. Mortal. Wkly Rep., 52, 2003, RR02.
    • (2003) Morb. Mortal. Wkly Rep. , vol.52 , pp. RR02
    • Mazurek, G.H.1    Villarino, M.E.2
  • 27
    • 84881092844 scopus 로고    scopus 로고
    • An introduction to high-throughput sequencing experiments: design and bioinformatics analysis
    • Normand, R., Yanai, I., An introduction to high-throughput sequencing experiments: design and bioinformatics analysis. Deep Sequencing Data Analysis, 2013, 1–26.
    • (2013) Deep Sequencing Data Analysis , pp. 1-26
    • Normand, R.1    Yanai, I.2
  • 33
    • 63749116310 scopus 로고    scopus 로고
    • The phospholipid scramblases 1 and 4 are cellular receptors for the secretory leukocyte protease inhibitor and interact with CD4 at the plasma membrane
    • Py, B., Basmaciogullari, S., Bouchet, J., Zarka, M., Moura, I.C., Benhamou, M., Monteiro, R.C., Hocini, H., Madrid, R., Benichou, S., The phospholipid scramblases 1 and 4 are cellular receptors for the secretory leukocyte protease inhibitor and interact with CD4 at the plasma membrane. PLoS One, 4(3), 2009, e5006.
    • (2009) PLoS One , vol.4 , Issue.3
    • Py, B.1    Basmaciogullari, S.2    Bouchet, J.3    Zarka, M.4    Moura, I.C.5    Benhamou, M.6    Monteiro, R.C.7    Hocini, H.8    Madrid, R.9    Benichou, S.10
  • 34
    • 22344440033 scopus 로고    scopus 로고
    • Prospective evaluation of a whole-blood test using Mycobacterium tuberculosis-specific antigens ESAT-6 and CFP-10 for diagnosis of active tuberculosis
    • Ravn, P., Munk, M.E., Andersen, A.B., Lundgren, B., Lundgren, J.D., Nielsen, L.N., Kok-Jensen, A., Andersen, P., Weldingh, K., Prospective evaluation of a whole-blood test using Mycobacterium tuberculosis-specific antigens ESAT-6 and CFP-10 for diagnosis of active tuberculosis. Clin. Diagn. Lab. Immunol. 12:4 (2005), 491–496.
    • (2005) Clin. Diagn. Lab. Immunol. , vol.12 , Issue.4 , pp. 491-496
    • Ravn, P.1    Munk, M.E.2    Andersen, A.B.3    Lundgren, B.4    Lundgren, J.D.5    Nielsen, L.N.6    Kok-Jensen, A.7    Andersen, P.8    Weldingh, K.9
  • 35
    • 33749447565 scopus 로고    scopus 로고
    • An update on the diagnosis of tuberculosis infection
    • Richeldi, L., An update on the diagnosis of tuberculosis infection. Am. J. Respir. Crit. Care Med. 174:7 (2006), 736–742.
    • (2006) Am. J. Respir. Crit. Care Med. , vol.174 , Issue.7 , pp. 736-742
    • Richeldi, L.1
  • 38
    • 84881169742 scopus 로고    scopus 로고
    • Mining large-scale response networks reveals ‘topmost activities’ in Mycobacterium tuberculosis infection
    • Sambarey, A., Prashanthi, K., Chandra, N., Mining large-scale response networks reveals ‘topmost activities’ in Mycobacterium tuberculosis infection. Sci. Rep., 3, 2013.
    • (2013) Sci. Rep. , vol.3
    • Sambarey, A.1    Prashanthi, K.2    Chandra, N.3
  • 39
    • 84988354927 scopus 로고    scopus 로고
    • EpiTracer — an algorithm for identifying epicenters in condition-specific biological networks
    • Sambaturu, N., Mishra, M., Chandra, N., EpiTracer — an algorithm for identifying epicenters in condition-specific biological networks. BMC Genomics, 17(Suppl. 4), 2015, 543.
    • (2015) BMC Genomics , vol.17 , pp. 543
    • Sambaturu, N.1    Mishra, M.2    Chandra, N.3
  • 40
    • 84949575420 scopus 로고    scopus 로고
    • Infection with Mycobacterium tuberculosis induces the Warburg effect in mouse lungs
    • Shi, L., Salamon, H., Eugenin, E.A., Pine, R., Cooper, A., Gennaro, M.L., Infection with Mycobacterium tuberculosis induces the Warburg effect in mouse lungs. Sci. Rep., 5, 2016, 18176.
    • (2016) Sci. Rep. , vol.5 , pp. 18176
    • Shi, L.1    Salamon, H.2    Eugenin, E.A.3    Pine, R.4    Cooper, A.5    Gennaro, M.L.6
  • 41
  • 42
    • 84887365949 scopus 로고    scopus 로고
    • Comparison of two interferon-gamma release assays (QuantiFERON-TB Gold In-Tube and T-SPOT. TB) in testing for latent tuberculosis infection among HIV-infected adults
    • Sultan, B., Benn, P., Mahungu, T., Young, M., Mercey, D., Morris-Jones, S., Miller, R.F., Comparison of two interferon-gamma release assays (QuantiFERON-TB Gold In-Tube and T-SPOT. TB) in testing for latent tuberculosis infection among HIV-infected adults. Int. J. STD AIDS 24:10 (2010), 775–779.
    • (2010) Int. J. STD AIDS , vol.24 , Issue.10 , pp. 775-779
    • Sultan, B.1    Benn, P.2    Mahungu, T.3    Young, M.4    Mercey, D.5    Morris-Jones, S.6    Miller, R.F.7
  • 43
    • 84959505947 scopus 로고    scopus 로고
    • Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis
    • Sweeney, T.E., Braviak, L., Tato, C.M., Khatri, P., Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. Lancet Respir. Med. 4:3 (2016), 213–224.
    • (2016) Lancet Respir. Med. , vol.4 , Issue.3 , pp. 213-224
    • Sweeney, T.E.1    Braviak, L.2    Tato, C.M.3    Khatri, P.4
  • 46
    • 84880055561 scopus 로고    scopus 로고
    • An enzyme that inactivates the inflammatory mediator leukotriene B4 restricts mycobacterial infection
    • Tobin, D.M., Roca, F.J., Ray, J.P., Ko, D.C., Ramakrishnan, L., An enzyme that inactivates the inflammatory mediator leukotriene B4 restricts mycobacterial infection. PLoS One, 8(7), 2013, e67828.
    • (2013) PLoS One , vol.8 , Issue.7
    • Tobin, D.M.1    Roca, F.J.2    Ray, J.P.3    Ko, D.C.4    Ramakrishnan, L.5
  • 48
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang, Z., Gerstein, M., Snyder, M., RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10:1 (2009), 57–63.
    • (2009) Nat. Rev. Genet. , vol.10 , Issue.1 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 49
    • 84876796413 scopus 로고    scopus 로고
    • The dual role of biomarkers for understanding basic principles and devising novel intervention strategies in tuberculosis
    • Weiner, J., Maertzdorf, J., Kaufmann, S.H.E., The dual role of biomarkers for understanding basic principles and devising novel intervention strategies in tuberculosis. Ann. N. Y. Acad. Sci. 1283:1 (2013), 22–29.
    • (2013) Ann. N. Y. Acad. Sci. , vol.1283 , Issue.1 , pp. 22-29
    • Weiner, J.1    Maertzdorf, J.2    Kaufmann, S.H.E.3
  • 50
    • 84872381586 scopus 로고    scopus 로고
    • Global tuberculosis report
    • (Accessed 14 November 2016)
    • World Health Organization, Global tuberculosis report. http://www.who.int/tb/publications/globalreport/en/, 2016 (Accessed 14 November 2016).
    • (2016)
    • World Health Organization1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.