-
1
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu W-T, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T. 2013. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499: 431-437. http://dx.doi.org/10.1038/nature12352.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.-F.6
Darling, A.7
Malfatti, S.8
Swan, B.K.9
Gies, E.A.10
Dodsworth, J.A.11
Hedlund, B.P.12
Tsiamis, G.13
Sievert, S.M.14
Liu, W.-T.15
Eisen, J.A.16
Hallam, S.J.17
Kyrpides, N.C.18
Stepanauskas, R.19
Rubin, E.M.20
Hugenholtz, P.21
Woyke, T.22
more..
-
2
-
-
34547540925
-
Dissecting biological "dark matter" with single-cell genetic analysis of rare and un cultivated TM7 microbes from the human mouth
-
Marcy Y, Ouverney C, Bik EM, Lösekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR. 2007. Dissecting biological "dark matter" with single-cell genetic analysis of rare and un cultivated TM7 microbes from the human mouth. Proc Natl Acad Sci U S A 104:11889-11894. http://dx.doi.org/10.1073/pnas.0704662104.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 11889-11894
-
-
Marcy, Y.1
Ouverney, C.2
Bik, E.M.3
Lösekann, T.4
Ivanova, N.5
Martin, H.G.6
Szeto, E.7
Platt, D.8
Hugenholtz, P.9
Relman, D.A.10
Quake, S.R.11
-
3
-
-
67149144216
-
Assessment of the diversity, abundance, and ecological distribution of members of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity
-
Davis JP, Youssef NH, Elshahed MS. 2009. Assessment of the diversity, abundance, and ecological distribution of members of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity. Appl Environ Microbiol 75:4139-4148. http://dx.doi.org/10.1128/AEM.00137-09.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4139-4148
-
-
Davis, J.P.1
Youssef, N.H.2
Elshahed, M.S.3
-
4
-
-
84887151854
-
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla
-
Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ, Thomas BC, Banfield JF. 2013. Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. mBio 4(5): e00708-13. http://dx.doi.org/10.1128/mBio.00708-13.
-
(2013)
MBio
, vol.4
, Issue.5
-
-
Kantor, R.S.1
Wrighton, K.C.2
Handley, K.M.3
Sharon, I.4
Hug, L.A.5
Castelle, C.J.6
Thomas, B.C.7
Banfield, J.F.8
-
5
-
-
84866772472
-
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla
-
Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF. 2012. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science 337:1661-1665. http://dx.doi.org/10.1126/science.1224041.
-
(2012)
Science
, vol.337
, pp. 1661-1665
-
-
Wrighton, K.C.1
Thomas, B.C.2
Sharon, I.3
Miller, C.S.4
Castelle, C.J.5
VerBerkmoes, N.C.6
Wilkins, M.J.7
Hettich, R.L.8
Lipton, M.S.9
Williams, K.H.10
Long, P.E.11
Banfield, J.F.12
-
6
-
-
84875828875
-
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
-
Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M. 2013. UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. Proc Natl Acad Sci USA 110:5540-5545. http://dx.doi.org/10.1073/pnas.1303090110.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 5540-5545
-
-
Campbell, J.H.1
O'Donoghue, P.2
Campbell, A.G.3
Schwientek, P.4
Sczyrba, A.5
Woyke, T.6
Söll, D.7
Podar, M.8
-
7
-
-
84892405230
-
NextClip: an analysis and read preparation tool for Nextera long mate pair libraries
-
Leggett RM, Clavijo BJ, Clissold L, Clark MD, Caccamo M. 2013. NextClip: an analysis and read preparation tool for Nextera long mate pair libraries. Bioinformatics 30:566-568. http://dx.doi.org/10.1093/bioinformatics/btt702.
-
(2013)
Bioinformatics
, vol.30
, pp. 566-568
-
-
Leggett, R.M.1
Clavijo, B.J.2
Clissold, L.3
Clark, M.D.4
Caccamo, M.5
-
8
-
-
85004148174
-
Complete genome sequence of Pseudomonas sp. UK4, a model organism for studies of functional amyloids in Pseudomonas
-
Dueholm MS, Danielsen HN, Nielsen PH. 2014. Complete genome sequence of Pseudomonas sp. UK4, a model organism for studies of functional amyloids in Pseudomonas. Genome Announc 2(5):e00898-14. http://dx.doi.org/10.1128/genomeA.00898-14.
-
(2014)
Genome Announc
, vol.2
, Issue.5
-
-
Dueholm, M.S.1
Danielsen, H.N.2
Nielsen, P.H.3
-
9
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. 2013. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotechnol 31:533-538. http://dx.doi.org/10.1038/nbt.2579.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
Hugenholtz, P.2
Skarshewski, A.3
Nielsen, K.L.4
Tyson, G.W.5
Nielsen, P.H.6
-
10
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068-2069. http://dx.doi.org/10.1093/bioinformatics/btu153.
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
11
-
-
84906272014
-
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
-
Yarza P, Yilmaz P, Pruesse E, Glöckner FO, Ludwig W, Schleifer K-H, Whitman WB, Euzéby J, Amann R, Rosselló-Móra R. 2014. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol 12:635-645. http://dx.doi.org/10.1038/nrmicro3330.
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 635-645
-
-
Yarza, P.1
Yilmaz, P.2
Pruesse, E.3
Glöckner, F.O.4
Ludwig, W.5
Schleifer, K.-H.6
Whitman, W.B.7
Euzéby, J.8
Amann, R.9
Rosselló-Móra, R.10
-
12
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106: 19126-19131. http://dx.doi.org/10.1073/pnas.0906412106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
|